arXiv subjects

Tini Garske

Publications and source records attributed to Tini Garske.

4 recordsLinked to original sources

arXiv2009

The emptiness formation probability correlation in homogeneous and dimerized XX chains

We review some known properties of the "emptiness formation probability" correlation which we have calculated numerically for spin-1/2 XX chains with constant (homogeneous) or alternating (dimerized) nearest-neighbor coupling and an external field (in $z$ direction) for arbitrary temperature. The long-distance asymptotic behavior of this correlation is known to be Gaussian at zero temperature and exponential at finite temperature for the homogeneous chain. By simple analytical arguments the exponential behavior at finite temperature extends to the dimerized system. Numerical results for the dimerized chain confirm the exponential decay at finite temperature and show Gaussian decay at zero temperature.

cond-mat.str-el↗

arXiv2005

Error thresholds in a mutation-selection model with Hopfield-type fitness

A deterministic mutation-selection model in the sequence space approach is investigated. Genotypes are identified with two-letter sequences. Mutation is modelled as a Markov process, fitness functions are of Hopfield type, where the fitness of a sequence is determined by the Hamming distances to a number of predefined patterns. Using a maximum principle for the population mean fitness in equilibrium, the error threshold phenomenon is studied for quadratic Hopfield-type fitness functions with small numbers of patterns. Different from previous investigations of the Hopfield model, the system shows error threshold behaviour not for all fitness functions, but only for certain parameter values.

q-bio.PE↗

arXiv2004

Maximum principle and mutation thresholds for four-letter sequence evolution

A four-state mutation-selection model for the evolution of populations of DNA-sequences is investigated with particular interest in the phenomenon of error thresholds. The mutation model considered is the Kimura 3ST mutation scheme, fitness functions, which determine the selection process, come from the permutation-invariant class. Error thresholds can be found for various fitness functions, the phase diagrams are more interesting than for equivalent two-state models. Results for (small) finite sequence lengths are compared with those for infinite sequence length, obtained via a maximum principle that is equivalent to the principle of minimal free energy in physics.

q-bio.PE↗

arXiv2003

A maximum principle for the mutation-selection equilibrium of nucleotide sequences

We study the equilibrium behaviour of a deterministic four-state mutation-selection model as a model for the evolution of a population of nucleotide sequences in sequence space. The mutation model is the Kimura 3ST mutation scheme, and the selection scheme is assumed to be invariant under permutation of sites. Considering the evolution process both forward and backward in time, we use the ancestral distribution as the stationary state of the backward process to derive an expression for the mutational loss (as the difference between ancestral and population mean fitness), and we prove a maximum principle that determines the population mean fitness in mutation-selection balance.

physics.bio-ph↗