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Tolga Tasdizen

Publications and source records attributed to Tolga Tasdizen.

At least 19 recordsLinked to original sources

Predicting Metastatic Risk from Primary Cancer Tissue Architecture via Distance-Aware Spatial Modeling

Predicting distant metastasis from the digital H & E slides of the primary tumor is a critical yet challenging task in computational pathology. Multiple Instance Learning (MIL) approaches can attend to subdomains in whole slide images (WSIs) that harbor features of pre-metastatic cancer regions. However, conventional MIL models largely treat tissue patches as unordered bags, discarding the spatial layout that defines how these regions are arranged and interact across the tissue. We propose that metastatic risk is shaped not only by local patch appearance, but also by the geometric organization of patches in the WSI and the interaction between the tissue compartments. To this end, we introduce Distance-aware Tissue Modeling for Multiple Instance Learning (DTMF-MIL), a spatial MIL framework that reinforces feature embeddings with explicit distance priors. By computing signed distance functions (SDFs) to capture regions with similar features, and representing each patch with radial-basis distance responses and local SDF statistics, DTMF-MIL learns positions of patches with respect to regional interiors and boundaries. The interactions between similar patches are contextualized across local tissue neighborhoods and used to guide slide-level attention while pooling patch feature evidence for metastasis prediction. We evaluate DTMF-MIL for prediction of distant prostate cancer metastasis in an internal prostate needle-biopsy cohort (IPC) from a large hospital system and on public TCGA-COAD and TCGA-KIRC datasets across multiple pathology foundation-model backbones. Across most dataset, backbone, and metric combinations, DTMF-MIL achieves the strongest results consistently.

cs.CV

Towards Accurate and Robust Surveillance Roadside IVD via Trackletized Audio-Visual Reasoning

Idling Vehicle Detection (IVD) seeks to determine, at the final frame of a video clip, whether any vehicle is idling, meaning the vehicle is stationary with its engine running, using synchronized video from a remote surveillance camera and multichannel audio captured by spatially distributed wireless microphones along the roadside. Prior full-image, clip-level fusion approaches tend to overfit scene background and full-frame context, produce unstable temporal decisions, and lack an explicit spatial prior to align vehicles with microphones, which makes them brittle under domain shift and data inefficient. Instead, we introduce TAVR-IVD, an audio-visual framework guided by multi-object tracking. Our method detects vehicles, links detections into tracklets, and classifies each vehicle by operating on its tracklet. This design raises the effective signal-to-noise ratio, stabilizes temporal decisions through tracklets, enforces an explicit spatial prior to align vehicles with microphones, and adapts across domains with limited calibration annotations while remaining detector agnostic and efficient. To evaluate deployment robustness, we further curate two evaluation extensions, AVIVD-LT and AVIVD-M, covering inter-day and cross-site shifts.

cs.CV

Weakly Supervised Contrastive Learning for Histopathology Patch Embeddings

Digital histopathology whole slide images (WSIs) provide gigapixel-scale high-resolution images that are highly useful for disease diagnosis. However, digital histopathology image analysis faces significant challenges due to the limited training labels, since manually annotating specific regions or small patches cropped from large WSIs requires substantial time and effort. Weakly supervised multiple instance learning (MIL) offers a practical and efficient solution by requiring only bag-level (slide-level) labels, while each bag typically contains multiple instances (patches). Most MIL methods directly use frozen image patch features generated by various image encoders as inputs and primarily focus on feature aggregation. However, feature representation learning for encoder pretraining in MIL settings has largely been neglected. In our work, we propose a novel feature representation learning framework called weakly supervised contrastive learning (WeakSupCon) that incorporates bag-level label information during training. Our method does not rely on instance-level pseudo-labeling, yet it effectively separates patches with different labels in the feature space. Experimental results demonstrate that the image features generated by our WeakSupCon method lead to improved downstream MIL performance compared to self-supervised contrastive learning approaches in three datasets. Our related code is available at github.com/BzhangURU/Paper_WeakSupCon_for_MIL

cs.CV

How to Build Robust, Scalable Models for GSV-Based Indicators in Neighborhood Research

A substantial body of health research demonstrates a strong link between neighborhood environments and health outcomes. Recently, there has been increasing interest in leveraging advances in computer vision to enable large-scale, systematic characterization of neighborhood built environments. However, the generalizability of vision models across fundamentally different domains remains uncertain, for example, transferring knowledge from ImageNet to the distinct visual characteristics of Google Street View (GSV) imagery. In applied fields such as social health research, several critical questions arise: which models are most appropriate, whether to adopt unsupervised training strategies, what training scale is feasible under computational constraints, and how much such strategies benefit downstream performance. These decisions are often costly and require specialized expertise. In this paper, we answer these questions through empirical analysis and provide practical insights into how to select and adapt foundation models for datasets with limited size and labels, while leveraging larger, unlabeled datasets through unsupervised training. Our study includes comprehensive quantitative and visual analyses comparing model performance before and after unsupervised adaptation.

cs.CV

HAVT-IVD: Heterogeneity-Aware Cross-Modal Network for Audio-Visual Surveillance: Idling Vehicles Detection With Multichannel Audio and Multiscale Visual Cues

Idling vehicle detection (IVD) uses surveillance video and multichannel audio to localize and classify vehicles in the last frame as moving, idling, or engine-off in pick-up zones. IVD faces three challenges: (i) modality heterogeneity between visual cues and audio patterns; (ii) large box scale variation requiring multi-resolution detection; and (iii) training instability due to coupled detection heads. The previous end-to-end (E2E) model with simple CBAM-based bi-modal attention fails to handle these issues and often misses vehicles. We propose HAVT-IVD, a heterogeneity-aware network with a visual feature pyramid and decoupled heads. Experiments show HAVT-IVD improves mAP by 7.66 over the disjoint baseline and 9.42 over the E2E baseline.

cs.CV

WeakSupCon: Weakly Supervised Contrastive Learning for Encoder Pre-training

Weakly supervised multiple instance learning (MIL) is a challenging task given that only bag-level labels are provided, while each bag typically contains multiple instances. This topic has been extensively studied in histopathological image analysis, where labels are usually available only at the whole slide image (WSI) level, while each WSI could be divided into thousands of small image patches for training. The dominant MIL approaches focus on feature aggregation and take fixed patch features as inputs. However, weakly supervised feature representation learning in MIL settings is always neglected. Those features used to be generated by self-supervised learning methods that do not utilize weak labels, or by foundation encoders pre-trained on other large datasets. In this paper, we propose a novel weakly supervised feature representation learning method called Weakly Supervised Contrastive Learning (WeakSupCon) that utilizes bag-level labels. In our method, we employ multi-task learning and define distinct contrastive losses for samples with different bag labels. Our experiments demonstrate that the features generated using WeakSupCon with limited computing resources significantly enhance MIL classification performance compared to self-supervised approaches across three datasets. Our WeakSupCon code is available at github.com/BzhangURU/Paper_WeakSupCon

cs.CV

Hierarchical Transformer for Electrocardiogram Diagnosis

We propose a hierarchical Transformer for ECG analysis that combines depth-wise convolutions, multi-scale feature aggregation via a CLS token, and an attention-gated module to learn inter-lead relationships and enhance interpretability. The model is lightweight, flexible, and eliminates the need for complex attention or downsampling strategies.

cs.LG

DuoFormer: Leveraging Hierarchical Representations by Local and Global Attention Vision Transformer

Despite the widespread adoption of transformers in medical applications, the exploration of multi-scale learning through transformers remains limited, while hierarchical representations are considered advantageous for computer-aided medical diagnosis. We propose a novel hierarchical transformer model that adeptly integrates the feature extraction capabilities of Convolutional Neural Networks (CNNs) with the advanced representational potential of Vision Transformers (ViTs). Addressing the lack of inductive biases and dependence on extensive training datasets in ViTs, our model employs a CNN backbone to generate hierarchical visual representations. These representations are adapted for transformer input through an innovative patch tokenization process, preserving the inherited multi-scale inductive biases. We also introduce a scale-wise attention mechanism that directly captures intra-scale and inter-scale associations. This mechanism complements patch-wise attention by enhancing spatial understanding and preserving global perception, which we refer to as local and global attention, respectively. Our model significantly outperforms baseline models in terms of classification accuracy, demonstrating its efficiency in bridging the gap between Convolutional Neural Networks (CNNs) and Vision Transformers (ViTs). The components are designed as plug-and-play for different CNN architectures and can be adapted for multiple applications. The code is available at https://github.com/xiaoyatang/DuoFormer.git.

cs.CV

A Comparison of Object Detection and Phrase Grounding Models in Chest X-ray Abnormality Localization using Eye-tracking Data

Chest diseases rank among the most prevalent and dangerous global health issues. Object detection and phrase grounding deep learning models interpret complex radiology data to assist healthcare professionals in diagnosis. Object detection locates abnormalities for classes, while phrase grounding locates abnormalities for textual descriptions. This paper investigates how text enhances abnormality localization in chest X-rays by comparing the performance and explainability of these two tasks. To establish an explainability baseline, we proposed an automatic pipeline to generate image regions for report sentences using radiologists' eye-tracking data. The better performance - mIoU = 0.36 vs. 0.20 - and explainability - Containment ratio 0.48 vs. 0.26 - of the phrase grounding model infers the effectiveness of text in enhancing chest X-ray abnormality localization.

cs.CV

CLASS-M: Adaptive stain separation-based contrastive learning with pseudo-labeling for histopathological image classification

Histopathological image classification is an important task in medical image analysis. Recent approaches generally rely on weakly supervised learning due to the ease of acquiring case-level labels from pathology reports. However, patch-level classification is preferable in applications where only a limited number of cases are available or when local prediction accuracy is critical. On the other hand, acquiring extensive datasets with localized labels for training is not feasible. In this paper, we propose a semi-supervised patch-level histopathological image classification model, named CLASS-M, that does not require extensively labeled datasets. CLASS-M is formed by two main parts: a contrastive learning module that uses separated Hematoxylin and Eosin images generated through an adaptive stain separation process, and a module with pseudo-labels using MixUp. We compare our model with other state-of-the-art models on two clear cell renal cell carcinoma datasets. We demonstrate that our CLASS-M model has the best performance on both datasets. Our code is available at github.com/BzhangURU/Paper_CLASS-M/tree/main

cs.CV

SRA: A Novel Method to Improve Feature Embedding in Self-supervised Learning for Histopathological Images

Self-supervised learning has become a cornerstone in various areas, particularly histopathological image analysis. Image augmentation plays a crucial role in self-supervised learning, as it generates variations in image samples. However, traditional image augmentation techniques often overlook the unique characteristics of histopathological images. In this paper, we propose a new histopathology-specific image augmentation method called stain reconstruction augmentation (SRA). We integrate our SRA with MoCo v3, a leading model in self-supervised contrastive learning, along with our additional contrastive loss terms, and call the new model SRA-MoCo v3. We demonstrate that our SRA-MoCo v3 always outperforms the standard MoCo v3 across various downstream tasks and achieves comparable or superior performance to other foundation models pre-trained on significantly larger histopathology datasets.

cs.CV

Joint Audio-Visual Idling Vehicle Detection with Streamlined Input Dependencies

Idling vehicle detection (IVD) can be helpful in monitoring and reducing unnecessary idling and can be integrated into real-time systems to address the resulting pollution and harmful products. The previous approach [13], a non-end-to-end model, requires extra user clicks to specify a part of the input, making system deployment more error-prone or even not feasible. In contrast, we introduce an end-to-end joint audio-visual IVD task designed to detect vehicles visually under three states: moving, idling and engine off. Unlike feature co-occurrence task such as audio-visual vehicle tracking, our IVD task addresses complementary features, where labels cannot be determined by a single modality alone. To this end, we propose AVIVD-Net, a novel network that integrates audio and visual features through a bidirectional attention mechanism. AVIVD-Net streamlines the input process by learning a joint feature space, reducing the deployment complexity of previous methods. Additionally, we introduce the AVIVD dataset, which is seven times larger than previous datasets, offering significantly more annotated samples to study the IVD problem. Our model achieves performance comparable to prior approaches, making it suitable for automated deployment. Furthermore, by evaluating AVIVDNet on the feature co-occurrence public dataset MAVD [23], we demonstrate its potential for extension to self-driving vehicle video-camera setups.

cs.CV

VISTA: A Visual and Textual Attention Dataset for Interpreting Multimodal Models

The recent developments in deep learning led to the integration of natural language processing (NLP) with computer vision, resulting in powerful integrated Vision and Language Models (VLMs). Despite their remarkable capabilities, these models are frequently regarded as black boxes within the machine learning research community. This raises a critical question: which parts of an image correspond to specific segments of text, and how can we decipher these associations? Understanding these connections is essential for enhancing model transparency, interpretability, and trustworthiness. To answer this question, we present an image-text aligned human visual attention dataset that maps specific associations between image regions and corresponding text segments. We then compare the internal heatmaps generated by VL models with this dataset, allowing us to analyze and better understand the model's decision-making process. This approach aims to enhance model transparency, interpretability, and trustworthiness by providing insights into how these models align visual and linguistic information. We conducted a comprehensive study on text-guided visual saliency detection in these VL models. This study aims to understand how different models prioritize and focus on specific visual elements in response to corresponding text segments, providing deeper insights into their internal mechanisms and improving our ability to interpret their outputs.

cs.CV

DuoFormer: Leveraging Hierarchical Visual Representations by Local and Global Attention

We here propose a novel hierarchical transformer model that adeptly integrates the feature extraction capabilities of Convolutional Neural Networks (CNNs) with the advanced representational potential of Vision Transformers (ViTs). Addressing the lack of inductive biases and dependence on extensive training datasets in ViTs, our model employs a CNN backbone to generate hierarchical visual representations. These representations are then adapted for transformer input through an innovative patch tokenization. We also introduce a 'scale attention' mechanism that captures cross-scale dependencies, complementing patch attention to enhance spatial understanding and preserve global perception. Our approach significantly outperforms baseline models on small and medium-sized medical datasets, demonstrating its efficiency and generalizability. The components are designed as plug-and-play for different CNN architectures and can be adapted for multiple applications. The code is available at https://github.com/xiaoyatang/DuoFormer.git.

cs.CV

F2FLDM: Latent Diffusion Models with Histopathology Pre-Trained Embeddings for Unpaired Frozen Section to FFPE Translation

The Frozen Section (FS) technique is a rapid and efficient method, taking only 15-30 minutes to prepare slides for pathologists' evaluation during surgery, enabling immediate decisions on further surgical interventions. However, FS process often introduces artifacts and distortions like folds and ice-crystal effects. In contrast, these artifacts and distortions are absent in the higher-quality formalin-fixed paraffin-embedded (FFPE) slides, which require 2-3 days to prepare. While Generative Adversarial Network (GAN)-based methods have been used to translate FS to FFPE images (F2F), they may leave morphological inaccuracies with remaining FS artifacts or introduce new artifacts, reducing the quality of these translations for clinical assessments. In this study, we benchmark recent generative models, focusing on GANs and Latent Diffusion Models (LDMs), to overcome these limitations. We introduce a novel approach that combines LDMs with Histopathology Pre-Trained Embeddings to enhance restoration of FS images. Our framework leverages LDMs conditioned by both text and pre-trained embeddings to learn meaningful features of FS and FFPE histopathology images. Through diffusion and denoising techniques, our approach not only preserves essential diagnostic attributes like color staining and tissue morphology but also proposes an embedding translation mechanism to better predict the targeted FFPE representation of input FS images. As a result, this work achieves a significant improvement in classification performance, with the Area Under the Curve rising from 81.99% to 94.64%, accompanied by an advantageous CaseFD. This work establishes a new benchmark for FS to FFPE image translation quality, promising enhanced reliability and accuracy in histopathology FS image analysis. Our work is available at https://minhmanho.github.io/f2f_ldm/.

eess.IV

DISC: Latent Diffusion Models with Self-Distillation from Separated Conditions for Prostate Cancer Grading

Latent Diffusion Models (LDMs) can generate high-fidelity images from noise, offering a promising approach for augmenting histopathology images for training cancer grading models. While previous works successfully generated high-fidelity histopathology images using LDMs, the generation of image tiles to improve prostate cancer grading has not yet been explored. Additionally, LDMs face challenges in accurately generating admixtures of multiple cancer grades in a tile when conditioned by a tile mask. In this study, we train specific LDMs to generate synthetic tiles that contain multiple Gleason Grades (GGs) by leveraging pixel-wise annotations in input tiles. We introduce a novel framework named Self-Distillation from Separated Conditions (DISC) that generates GG patterns guided by GG masks. Finally, we deploy a training framework for pixel-level and slide-level prostate cancer grading, where synthetic tiles are effectively utilized to improve the cancer grading performance of existing models. As a result, this work surpasses previous works in two domains: 1) our LDMs enhanced with DISC produce more accurate tiles in terms of GG patterns, and 2) our training scheme, incorporating synthetic data, significantly improves the generalization of the baseline model for prostate cancer grading, particularly in challenging cases of rare GG5, demonstrating the potential of generative models to enhance cancer grading when data is limited.

eess.IV

Analyzing the Domain Shift Immunity of Deep Homography Estimation

Homography estimation serves as a fundamental technique for image alignment in a wide array of applications. The advent of convolutional neural networks has introduced learning-based methodologies that have exhibited remarkable efficacy in this realm. Yet, the generalizability of these approaches across distinct domains remains underexplored. Unlike other conventional tasks, CNN-driven homography estimation models show a distinctive immunity to domain shifts, enabling seamless deployment from one dataset to another without the necessity of transfer learning. This study explores the resilience of a variety of deep homography estimation models to domain shifts, revealing that the network architecture itself is not a contributing factor to this remarkable adaptability. By closely examining the models' focal regions and subjecting input images to a variety of modifications, we confirm that the models heavily rely on local textures such as edges and corner points for homography estimation. Moreover, our analysis underscores that the domain shift immunity itself is intricately tied to the utilization of these local textures.

cs.CV

Comparing radiologists' gaze and saliency maps generated by interpretability methods for chest x-rays

The interpretability of medical image analysis models is considered a key research field. We use a dataset of eye-tracking data from five radiologists to compare the outputs of interpretability methods and the heatmaps representing where radiologists looked. We conduct a class-independent analysis of the saliency maps generated by two methods selected from the literature: Grad-CAM and attention maps from an attention-gated model. For the comparison, we use shuffled metrics, which avoid biases from fixation locations. We achieve scores comparable to an interobserver baseline in one shuffled metric, highlighting the potential of saliency maps from Grad-CAM to mimic a radiologist's attention over an image. We also divide the dataset into subsets to evaluate in which cases similarities are higher.

cs.CV