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Tom Abel

Publications and source records attributed to Tom Abel.

At least 73 records · Page 4Linked to original sources

Simplex-in-Cell Technique for Collisionless Plasma Simulations

We extend the simplex-in-cell (SIC) technique recently introduced in the context of collisionless dark matter fluids (Abel et al. 2012; Hahn et al. 2012) to the case of collisionless plasmas. The six-dimensional phase space distribution function $f(\mathbf x,\mathbf v)$ is represented by an ensemble of three-dimensional manifolds, which we refer to as sheets. The electric potential field is obtained by solving the Poisson equation on a uniform mesh, where the charge density is evaluated by a spatial projection of the phase space sheets. The SIC representation of phase space density facilitates robust, high accuracy numerical evolution of the Vlasov-Poisson system using significantly fewer tracer particles than comparable particle-in-cell (PIC) approaches by reducing the numerical shot-noise associated with the latter. We introduce the SIC formulation and describe its implementation in a new code, which we validate using standard test problems including plasma oscillations, Landau damping, and two stream instabilities in one dimension. Merits of the new scheme are shown to include higher accuracy and faster convergence rates in the number of particles. We finally motivate and outline the efficient application of SIC to higher dimensional problems.

physics.comp-ph↗

An exact general remeshing scheme applied to physically conservative voxelization

We present an exact general remeshing scheme to compute analytic integrals of polynomial functions over the intersections between convex polyhedral cells of old and new meshes. In physics applications this allows one to ensure global mass, momentum, and energy conservation while applying higher-order polynomial interpolation. We elaborate on applications of our algorithm arising in the analysis of cosmological N-body data, computer graphics, and continuum mechanics problems. We focus on the particular case of remeshing tetrahedral cells onto a Cartesian grid such that the volume integral of the polynomial density function given on the input mesh is guaranteed to equal the corresponding integral over the output mesh. We refer to this as "physically conservative voxelization". At the core of our method is an algorithm for intersecting two convex polyhedra by successively clipping one against the faces of the other. This algorithm is an implementation of the ideas presented abstractly by Sugihara (1994), who suggests using the planar graph representations of convex polyhedra to ensure topological consistency of the output. This makes our implementation robust to geometric degeneracy in the input. We employ a simplicial decomposition to calculate moment integrals up to quadratic order over the resulting intersection domain. We also address practical issues arising in a software implementation, including numerical stability in geometric calculations, management of cancellation errors, and extension to two dimensions. In a comparison to recent work, we show substantial performance gains. We provide a C implementation intended to be a fast, accurate, and robust tool for geometric calculations on polyhedral mesh elements.

physics.comp-ph↗

Cold accretion in early galaxy formation and its Lyman-alpha signatures

The Lyman-alpha (Lya) emission has played an important role in detecting high-redshift galaxies, including recently distant ones at redshift z > 7. It may also contain important information on the origin of these galaxies. Here, we investigate the formation of a typical L* galaxy and its observational signatures at the earliest stage, by combining a cosmological hydrodynamic simulation with three-dimensional radiative transfer calculations using the newly improved ART^2 code. Our cosmological simulation uses the Aquila initial condition which zooms in onto a Milky Way-like halo with high resolutions, and our radiative transfer couples multi-wavelength continuum, Lya line, and ionization of hydrogen. We find that the modeled galaxy starts to form at redshift z ~ 24 through efficient accretion of cold gas, which produces a strong Lya line with a luminosity of L(Lya) ~ 10^42 erg/s as early as z ~ 14. The Lya emission appears to trace the cold, dense gas. The lines exhibit asymmetric, single-peak profiles, and are shifted to the blue wing, a characteristic feature of gas inflow. Moreover, the contribution to the total Lya luminosity by excitation cooling increases with redshift, and it becomes dominant at z >~ 6. We predict that L* galaxies such as the modeled one may be detected at z <~ 8 by JWST and ALMA with a reasonable integration time. Beyond redshift 12, however, only Lya line may be observable by spectroscopic surveys. Our results suggest that Lya line is one of the most powerful tools to detect the first generation of galaxies, and to decipher their formation mechanism.

astro-ph.CO↗

The Birth of a Galaxy - III. Propelling reionisation with the faintest galaxies

Starlight from galaxies plays a pivotal role throughout the process of cosmic reionisation. We present the statistics of dwarf galaxy properties at z > 7 in haloes with masses up to 10^9 solar masses, using a cosmological radiation hydrodynamics simulation that follows their buildup starting with their Population III progenitors. We find that metal-enriched star formation is not restricted to atomic cooling ($T_{\rm vir} \ge 10^4$ K) haloes, but can occur in haloes down to masses ~10^6 solar masses, especially in neutral regions. Even though these smallest galaxies only host up to 10^4 solar masses of stars, they provide nearly 30 per cent of the ionising photon budget. We find that the galaxy luminosity function flattens above M_UV ~ -12 with a number density that is unchanged at z < 10. The fraction of ionising radiation escaping into the intergalactic medium is inversely dependent on halo mass, decreasing from 50 to 5 per cent in the mass range $\log M/M_\odot = 7.0-8.5$. Using our galaxy statistics in a semi-analytic reionisation model, we find a Thomson scattering optical depth consistent with the latest Planck results, while still being consistent with the UV emissivity constraints provided by Ly$α$ forest observations at z = 4-6.

astro-ph.CO↗

Escape of Lyman-alpha and continuum photons from star-forming galaxies

A large number of high-redshift galaxies have been discovered via their narrow-band Lya line or broad-band continuum colors in recent years. The nature of the escaping process of photons from these early galaxies is crucial to understanding galaxy evolution and the cosmic reionization. Here, we investigate the escape of Lya, non-ionizing UV-continuum (l = 1300 - 1600 angstrom in rest frame), and ionizing photons (l < 912 angstrom) from galaxies by combining a cosmological hydrodynamic simulation with three-dimensional multi-wavelength radiative transfer calculations. The galaxies are simulated in a box of 5^3 h^-3 Mpc^3 with high resolutions using the Aquila initial condition which reproduces a Milky Way-like galaxy at redshift z=0. We find that the escape fraction (fesc) of these different photons shows a complex dependence on redshift and galaxy properties: fesc(Lya) and fesc(UV) appear to evolve with redshift, and they show similar, weak correlations with galaxy properties such as mass, star formation, metallicity, and dust content, while fesc(Ion) remains roughly constant at ~ 0.2 from z ~ 0 - 10, and it does not show clear dependence on galaxy properties. fesc(Lya) correlates more strongly with fesc(UV) than with fesc(Ion). In addition, we find a relation between the emergent Lya luminosity and the ionizing photon emissivity of Lyman Alpha Emitters (LAEs). By combining this relation with the observed luminosity functions of LAEs at different redshift, we estimate the contribution from LAEs to the reionization of intergalactic medium (IGM). Our result suggests that ionizing photons from LAEs alone are not sufficient to ionize IGM at z > 6, but they can maintain the ionization of IGM at z ~ 0 - 5.

astro-ph.CO↗

The AGORA High-Resolution Galaxy Simulations Comparison Project

We introduce the AGORA project, a comprehensive numerical study of well-resolved galaxies within the LCDM cosmology. Cosmological hydrodynamic simulations with force resolutions of ~100 proper pc or better will be run with a variety of code platforms to follow the hierarchical growth, star formation history, morphological transformation, and the cycle of baryons in and out of 8 galaxies with halo masses M_vir ~= 1e10, 1e11, 1e12, and 1e13 Msun at z=0 and two different ("violent" and "quiescent") assembly histories. The numerical techniques and implementations used in this project include the smoothed particle hydrodynamics codes GADGET and GASOLINE, and the adaptive mesh refinement codes ART, ENZO, and RAMSES. The codes will share common initial conditions and common astrophysics packages including UV background, metal-dependent radiative cooling, metal and energy yields of supernovae, and stellar initial mass function. These are described in detail in the present paper. Subgrid star formation and feedback prescriptions will be tuned to provide a realistic interstellar and circumgalactic medium using a non-cosmological disk galaxy simulation. Cosmological runs will be systematically compared with each other using a common analysis toolkit, and validated against observations to verify that the solutions are robust - i.e., that the astrophysical assumptions are responsible for any success, rather than artifacts of particular implementations. The goals of the AGORA project are, broadly speaking, to raise the realism and predictive power of galaxy simulations and the understanding of the feedback processes that regulate galaxy "metabolism." The proof-of-concept dark matter-only test of the formation of a galactic halo with a z=0 mass of M_vir ~= 1.7e11 Msun by 9 different versions of the participating codes is also presented to validate the infrastructure of the project.

astro-ph.GA↗

How closely do baryons follow dark matter on large scales?

We investigate the large-scale clustering and gravitational interaction of baryons and dark matter (DM) over cosmic time using a set of collisionless N-body simulations. Both components, baryons and DM, are evolved from distinct primordial density and velocity power spectra as predicted by early-universe physics. We first demonstrate that such two-component simulations require an unconventional match between force and mass resolution (i.e. force softening on at least the mean particle separation scale). Otherwise, the growth on any scale is not correctly recovered because of a spurious coupling between the two species at the smallest scales. With these simulations, we then demonstrate how the primordial differences in the clustering of baryons and DM are progressively diminished over time. In particular, we explicitly show how the BAO signature is damped in the spatial distribution of baryons and imprinted in that of DM. This is a rapid process, yet it is still not fully completed at low redshifts. On large scales, the overall shape of the correlation function of baryons and DM differs by 2% at z = 9 and by 0.2% at z = 0. The differences in the amplitude of the BAO peak are approximately a factor of 5 larger: 10% at z = 9 and 1% at z = 0. These discrepancies are, however, smaller than effects expected to be introduced by galaxy formation physics in both the shape of the power spectrum and in the BAO peak, and are thus unlikely to be detected given the precision of the next generation of galaxy surveys. Hence, our results validate the standard practice of modelling the observed galaxy distribution using predictions for the total mass clustering in the Universe.

astro-ph.CO↗

The Warm DM halo mass function below the cut-off scale

Warm Dark Matter (WDM) cosmologies are a viable alternative to the Cold Dark Matter (CDM) scenario. Unfortunately, an accurate scrutiny of the WDM predictions with N-body simulations has proven difficult due to numerical artefacts. Here, we report on cosmological simulations that, for the first time, are devoid of those problems, and thus, are able to accurately resolve the WDM halo mass function well below the cut-off. We discover a complex picture, with perturbations at different evolutionary stages populating different ranges in the halo mass function. On the smallest mass scales we can resolve, identified objects are typically centres of filaments that are starting to collapse. On intermediate mass scales, objects typically correspond to fluctuations that have collapsed and are in the process of relaxation, whereas the high mass end is dominated by objects similar to haloes identified in CDM simulations. We then explicitly show how the formation of low-mass haloes is suppressed, which translates into a strong cut-off in the halo mass function. This disfavours some analytic formulations that predict a halo mass function that would extend well below the free streaming mass. We argue for a more detailed exploration of the formation of the smallest structures expected to form in a given cosmology, which, we foresee, will advance our overall understanding of structure formation.

astro-ph.CO↗

Noiseless Gravitational Lensing Simulations

The microphysical properties of the DM particle can, in principle, be constrained by the properties and abundance of substructures in DM halos, as measured through strong gravitational lensing. Unfortunately, there is a lack of accurate theoretical predictions for the lensing signal of substructures, mainly because of the discreteness noise inherent to N-body simulations. Here we present Recursive-TCM, a method that is able to provide lensing predictions with an arbitrarily low discreteness noise, without any free parameters or smoothing scale. This solution is based on a novel way of interpreting the results of N-body simulations, where particles simply trace the evolution and distortion of Lagrangian phase-space volume elements. We discuss the advantages of this method over the widely used cloud-in-cells and adaptive-kernel smoothing density estimators. Applying the new method to a cluster-sized DM halo simulated in warm and cold DM scenarios, we show how the expected differences in their substructure population translate into differences in the convergence and magnification maps. We anticipate that our method will provide the high-precision theoretical predictions required to interpret and fully exploit strong gravitational lensing observations.

astro-ph.CO↗

Enzo: An Adaptive Mesh Refinement Code for Astrophysics

This paper describes the open-source code Enzo, which uses block-structured adaptive mesh refinement to provide high spatial and temporal resolution for modeling astrophysical fluid flows. The code is Cartesian, can be run in 1, 2, and 3 dimensions, and supports a wide variety of physics including hydrodynamics, ideal and non-ideal magnetohydrodynamics, N-body dynamics (and, more broadly, self-gravity of fluids and particles), primordial gas chemistry, optically-thin radiative cooling of primordial and metal-enriched plasmas (as well as some optically-thick cooling models), radiation transport, cosmological expansion, and models for star formation and feedback in a cosmological context. In addition to explaining the algorithms implemented, we present solutions for a wide range of test problems, demonstrate the code's parallel performance, and discuss the Enzo collaboration's code development methodology.

astro-ph.IM↗

A new approach to simulating collisionless dark matter fluids

Recently, we have shown how current cosmological N-body codes already follow the fine grained phase-space information of the dark matter fluid. Using a tetrahedral tesselation of the three-dimensional manifold that describes perfectly cold fluids in six-dimensional phase space, the phase-space distribution function can be followed throughout the simulation. This allows one to project the distribution function into configuration space to obtain highly accurate densities, velocities, and velocity dispersions. Here, we exploit this technique to show first steps on how to devise an improved particle-mesh technique. At its heart, the new method thus relies on a piecewise linear approximation of the phase space distribution function rather than the usual particle discretisation. We use pseudo-particles that approximate the masses of the tetrahedral cells up to quadrupolar order as the locations for cloud-in-cell (CIC) deposit instead of the particle locations themselves as in standard CIC deposit. We demonstrate that this modification already gives much improved stability and more accurate dynamics of the collisionless dark matter fluid at high force and low mass resolution. We demonstrate the validity and advantages of this method with various test problems as well as hot/warm-dark matter simulations which have been known to exhibit artificial fragmentation. This completely unphysical behaviour is much reduced in the new approach. The current limitations of our approach are discussed in detail and future improvements are outlined.

astro-ph.CO↗

Reionization Histories of Milky Way Mass Halos

We investigate the connection between the epoch of reionization and the present day universe, by examining the extended mass reionization histories of dark matter halos identified at z=0. We combine an N-body dark matter simulation of a 600 Mpc volume with a three-dimensional, seminumerical reionization model. This provides reionization redshifts for each particle, which can then be connected with the properties of their halos at the present time. We find that the vast majority of present-day halos with masses larger than ~ few x 10^11 Msun reionize earlier than the rest of the universe. We also find significant halo-to-halo diversity in mass reionization histories, and find that in realistic inhomogenous models, the material within a given halo is not expected to reionize at the same time. In particular, the scatter in reionization times within individual halos is typically larger than the scatter among halos. From our fiducial reionization model, we find that the typical 68% scatter in reionization times within halos is ~ 115 Myr for 10^(12 \pm 0.25) Msun halos, decreasing slightly to ~ 95 Myr for 10^(15 \pm 0.25) Msun halos. We find a mild correlation between reionization history and environment: halos with shorter reionization histories are typically in more clustered environments, with the strongest trend on a scale of ~ 20 Mpc. Material in Milky Way mass halos with short reionization histories is preferentially reionized in relatively large HII regions, implying reionization mostly by sources external to the progenitors of the present-day halo. We investigate the impact on our results of varying the reionization model parameters, which span a range of reionization scenarios with varying timing and morphology.

astro-ph.CO↗

Single-Pass GPU-Raycasting for Structured Adaptive Mesh Refinement Data

Structured Adaptive Mesh Refinement (SAMR) is a popular numerical technique to study processes with high spatial and temporal dynamic range. It reduces computational requirements by adapting the lattice on which the underlying differential equations are solved to most efficiently represent the solution. Particularly in astrophysics and cosmology such simulations now can capture spatial scales ten orders of magnitude apart and more. The irregular locations and extensions of the refined regions in the SAMR scheme and the fact that different resolution levels partially overlap, poses a challenge for GPU-based direct volume rendering methods. kD-trees have proven to be advantageous to subdivide the data domain into non-overlapping blocks of equally sized cells, optimal for the texture units of current graphics hardware, but previous GPU-supported raycasting approaches for SAMR data using this data structure required a separate rendering pass for each node, preventing the application of many advanced lighting schemes that require simultaneous access to more than one block of cells. In this paper we present a single-pass GPU-raycasting algorithm for SAMR data that is based on a kD-tree. The tree is efficiently encoded by a set of 3D-textures, which allows to adaptively sample complete rays entirely on the GPU without any CPU interaction. We discuss two different data storage strategies to access the grid data on the GPU and apply them to several datasets to prove the benefits of the proposed method.

astro-ph.IM↗

A Novel Approach to Visualizing Dark Matter Simulations

In the last decades cosmological N-body dark matter simulations have enabled ab initio studies of the formation of structure in the Universe. Gravity amplified small density fluctuations generated shortly after the Big Bang, leading to the formation of galaxies in the cosmic web. These calculations have led to a growing demand for methods to analyze time-dependent particle based simulations. Rendering methods for such N-body simulation data usually employ some kind of splatting approach via point based rendering primitives and approximate the spatial distributions of physical quantities using kernel interpolation techniques, common in SPH (Smoothed Particle Hydrodynamics)-codes. This paper proposes three GPU-assisted rendering approaches, based on a new, more accurate method to compute the physical densities of dark matter simulation data. It uses full phase-space information to generate a tetrahedral tessellation of the computational domain, with mesh vertices defined by the simulation's dark matter particle positions. Over time the mesh is deformed by gravitational forces, causing the tetrahedral cells to warp and overlap. The new methods are well suited to visualize the cosmic web. In particular they preserve caustics, regions of high density that emerge, when several streams of dark matter particles share the same location in space, indicating the formation of structures like sheets, filaments and halos. We demonstrate the superior image quality of the new approaches in a comparison with three standard rendering techniques for N-body simulation data.

astro-ph.IM↗

The Birth of a Galaxy. II. The Role of Radiation Pressure

Massive stars provide feedback that shapes the interstellar medium of galaxies at all redshifts and their resulting stellar populations. Here we present three adaptive mesh refinement radiation hydrodynamics simulations that illustrate the impact of momentum transfer from ionising radiation to the absorbing gas on star formation in high-redshift dwarf galaxies. Momentum transfer is calculated by solving the radiative transfer equation with a ray tracing algorithm that is adaptive in spatial and angular coordinates. We find that momentum input partially affects star formation by increasing the turbulent support to a three-dimensional rms velocity equal to the circular velocity of early haloes. Compared to a calculation that neglects radiation pressure, the star formation rate is decreased by a factor of five to 1.8 x 10^{-2} Msun/yr in a dwarf galaxy with a dark matter and stellar mass of 2.0 x 10^8 and 4.5 x 10^5 solar masses, respectively, when radiation pressure is included. Its mean metallicity of 10^{-2.1} Z_sun is consistent with the observed dwarf galaxy luminosity-metallicity relation. However, what one may naively expect from the calculation without radiation pressure, the central region of the galaxy overcools and produces a compact, metal-rich stellar population with an average metallicity of 0.3 Z_sun, indicative of an incorrect physical recipe. In addition to photo-heating in HII regions, radiation pressure further drives dense gas from star forming regions, so supernovae feedback occurs in a warmer and more diffuse medium, launching metal-rich outflows. Capturing this aspect and a temporal separation between the start of radiative and supernova feedback are numerically important in the modeling of galaxies to avoid the "overcooling problem". We estimate that dust in early low-mass galaxies is unlikely to aid in momentum transfer from radiation to the gas.

astro-ph.CO↗

Tracing the Dark Matter Sheet in Phase Space

The primordial velocity dispersion of dark matter is small compared to the velocities attained during structure formation. The initial density distribution is close to uniform and it occupies an initial sheet in phase space that is single valued in velocity space. Because of gravitational forces this three dimensional manifold evolves in phase space without ever tearing, conserving phase-space volume and preserving the connectivity of nearby points. N-body simulations already follow the motion of this sheet in phase space. This fact can be used to extract full fine-grained phase-space-structure information from existing cosmological N-body simulations. Particles are considered as the vertices of an unstructured three dimensional mesh, moving in six dimensional phase-space. On this mesh, mass density and momentum are uniquely defined. We show how to obtain the space density of the fluid, detect caustics, and count the number of streams as well as their individual contributions to any point in configuration-space. We calculate the bulk velocity, local velocity dispersions, and densities from the sheet - all without averaging over control volumes. This gives a wealth of new information about dark matter fluid flow which had previously been thought of as inaccessible to N-body simulations. We outline how this mapping may be used to create new accurate collisionless fluid simulation codes that may be able to overcome the sparse sampling and unphysical two-body effects that plague current N-body techniques.

astro-ph.CO↗

ART^2 : Coupling Lyman-alpha Line and Multi-wavelength Continuum Radiative Transfer

Narrow-band Lya line and broad-band continuum have played important roles in the discovery of high-redshift galaxies in recent years. Hence, it is crucial to study the radiative transfer of both Lya and continuum photons in the context of galaxy formation and evolution in order to understand the nature of distant galaxies. Here, we present a three-dimensional Monte Carlo radiative transfer code, All-wavelength Radiative Transfer with Adaptive Refinement Tree (ART^2), which couples Lya line and multi-wavelength continuum, for the study of panchromatic properties of galaxies and interstellar medium. This code is based on the original version of Li et al., and features three essential modules: continuum emission from X-ray to radio, Lya emission from both recombination and collisional excitation, and ionization of neutral hydrogen. The coupling of these three modules, together with an adaptive refinement grid, enables a self-consistent and accurate calculation of the Lya properties. As an example, we apply ART^2 to a cosmological simulation that includes both star formation and black hole growth, and study in detail a sample of massive galaxies at redshifts z=3.1 - 10.2. We find that these galaxies are Lya emitters (LAEs), whose Lya emission traces the dense gas region, and that their Lya lines show a shape characteristic of gas inflow. Furthermore, the Lya properties, including photon escape fraction, emergent luminosity, and equivalent width, change with time and environment. Our results suggest that LAEs evolve with redshift, and that early LAEs such as the most distant one detected at z ~ 8.6 may be dwarf galaxies with a high star formation rate fueled by infall of cold gas, and a low Lya escape fraction.

astro-ph.CO↗

Were progenitors of local L* galaxies Lyman-alpha emitters at high redshift?

The Lya emission has been observed from galaxies over a redshift span z ~ 0 - 8.6. However, the evolution of high-redshift Lya emitters (LAEs), and the link between these populations and local galaxies, remain poorly understood. Here, we investigate the Lya properties of progenitors of a local L* galaxy by combining cosmological hydrodynamic simulations with three-dimensional radiative transfer calculations using the new ART^2 code. We find that the main progenitor (the most massive one) of a Milky Way-like galaxy has a number of Lya properties close to those of observed LAEs at z ~ 2 - 6, but most of the fainter ones appear to fall below the detection limits of current surveys. The Lya photon escape fraction depends sensitively on a number of physical properties of the galaxy, such as mass, star formation rate, and metallicity, as well as galaxy morphology and orientation. Moreover, we find that high-redshift LAEs show blue-shifted Lya line profiles characteristic of gas inflow, and that the Lya emission by excitation cooling increases with redshift, and becomes dominant at z > 6. Our results suggest that some observed LAEs at z ~ 2-6 with luminosity of L_Lya ~ 10^{42-43} ergs/s may be similar to the main progenitor of the Milky Way at high redshift, and that they may evolve into present-day L* galaxies.

astro-ph.CO↗