arXiv subjects

Tomáš Mančal

Publications and source records attributed to Tomáš Mančal.

22 records · Page 2Linked to original sources

arXiv2015

Vibronic coupling explains the ultrafast carotenoid-to-bacteriochlorophyll energy transfer in natural and artificial light harvesters

The initial energy transfer in photosynthesis occurs between the light-harvesting pigments and on ultrafast timescales. We analyze the carotenoid to bacteriochlorophyll energy transfer in LH2 Marichromatium purpuratum as well as in an artificial light-harvesting dyad system by using transient grating and two-dimensional electronic spectroscopy with 10 fs time resolution. We find that Förster-type models reproduce the experimentally observed 60 fs transfer times, but overestimate coupling constants, which leads to a disagreement with both linear absorption and electronic 2D-spectra. We show that a vibronic model, which treats carotenoid vibrations on both electronic ground and excited state as part of the system's Hamiltonian, reproduces all measured quantities. Importantly, the vibronic model presented here can explain the fast energy transfer rates with only moderate coupling constants, which are in agreement with structure based calculations. Counterintuitively, the vibrational levels on the carotenoid electronic ground state play a central role in the excited state population transfer to bacteriochlorophyll as the resonance between the donor-acceptor energy gap and vibrational ground state energies is the physical basis of the ultrafast energy transfer rates in these systems.

physics.chem-ph↗

arXiv2013

Transfer of Vibrational Coherence Through Incoherent Energy Transfer Process in Förster Limi

We study transfer of coherent nuclear oscillations between an excitation energy donor and an acceptor in a simple dimeric electronic system coupled to an unstructured thermodynamic bath and some pronounced vibrational intramolecular mode. Our focus is on the non-linear optical response of such a system, i.e. we study both excited state energy transfer and the compensation of the so-called ground state bleach signal. The response function formalism enables us to investigate a heterodimer with monomers coupled strongly to the bath and by a weak resonance coupling to each other (Förster rate limit). Our work is motivated by recent observation of various vibrational signatures in 2D coherent spectra of energy transferring systems including large structures with a fast energy diffusion. We find that the vibrational coherence can be transferred from donor to acceptor molecules provided the transfer rate is sufficiently fast. The ground state bleach signal of the acceptor molecules does not show any oscillatory signatures, and oscillations in ground state bleaching signal of the donor prevail with the amplitude which is not decreasing with the relaxation rate.

physics.chem-ph↗

arXiv2013

Dynamic Coherence in Excitonic Molecular Complexes under Various Excitation Conditions

We investigate the relevance of dynamic quantum coherence in the energy transfer efficiency of molecular aggregates. We contrast the dynamics after excitation of a quantum mechanical system with that of a classical system. We demonstrate how a classical description of an ensemble average can be satisfactorily interpreted either as a single system driven by a continuous force or as an ensemble of systems each driven by an impulsive force. We derive the time evolution of the density matrix for an open quantum system excited by light or by a neighboring antenna. We argue that unlike in the classical case, the quantum description does not allow for a formal decomposition of the dynamics into sudden jumps in the quantum mechanical state. Rather, there is a natural finite time-scale associated with the excitation process. We propose a simple experiment how to test the influence of this time scale on the yield of photosynthesis. Because photosynthesis is intrinsically an average process, the efficiency of photosynthesis can be assessed from the quantum mechanical expectation value calculated from the second-order response theory, which has the same validity as the perturbative description of ultrafast experiments. We demonstrate using typical parameters of the currently most studied photosynthetic antenna, the Fenna-Matthews-Olson (FMO) complex, and a typical energy transfer rate from the chlorosome baseplate, that dynamic coherences are averaged out in the complex despite excitation proceeding through a coherent superposition of its eigenstates. The dynamic coherence averages out even when the FMO model is completely free of all dissipation and dephasing. We conclude that under natural excitation conditions coherent dynamics cannot be responsible for the remarkable efficiency of the photosynthesis even when considering the dynamics at a single molecular level.

physics.bio-ph↗

arXiv2012

Enhancement of Vibronic and Ground-State Vibrational Coherences in 2D Spectra of Photosynthetic Complexes

A vibronic-exciton model is applied to investigate the mechanism of enhancement of coherent oscillations due to mixing of electronic and nuclear degrees of freedom recently proposed as the origin of the long-lived oscillations in 2D spectra of the FMO complex [Christensson et al. J. Phys. Chem. B 116 (2012) 7449]. We reduce the problem to a model BChl dimer to elucidate the role of resonance coupling, site energies, nuclear mode and energy disorder in the enhancement of vibronic-exciton and ground-state vibrational coherences, and to identify regimes where this enhancement is significant. For a heterodimer representing the two coupled BChls 3 and 4 of the FMO complex, the initial amplitude of the vibronic-exciton and vibrational coherences are enhanced by up to 15 and 5 times, respectively, compared to the vibrational coherences in the isolated monomer. This maximum initial amplitude enhancement occurs when there is a resonance between the electronic energy gap and the frequency of the vibrational mode. The bandwidth of this enhancement is about 100 cm-1 for both mechanisms. The excitonic mixing of electronic and vibrational DOF leads to additional dephasing relative to the vibrational coherences. We evaluate the dephasing dynamics by solving the quantum master equation in Markovian approximation and observe a strong dependence of the life-time enhancement on the mode frequency. Long-lived vibronic-exciton coherences are found to be generated only when the frequency of the mode is in the vicinity of the electronic resonance. Although the vibronic-exciton coherences exhibit a larger initial amplitude compared to the ground-state vibrational coherences, we conclude that both type have a similar magnitude at long time for the present model. The ability to distinguish between vibronic-exciton and ground-state vibrational coherences in the general case of molecular aggregate is discussed.

physics.chem-ph↗