arXiv subjects

Tomohiro Nabika

Publications and source records attributed to Tomohiro Nabika.

4 recordsLinked to original sources

arXiv2026

GPU-Accelerated Sequential Monte Carlo for Bayesian Spectral Analysis

Bayesian spectral deconvolution provides a data-driven framework for mathematical model selection and parameter estimation from spectral data. Although highly versatile, it becomes computationally expensive as the number of model parameters, data points, and candidate models increases, often rendering practical applications infeasible. We propose a GPU-accelerated approach in which a sequential Monte Carlo sampler (SMCS) is run in parallel on a GPU to perform Bayesian model selection of the number of spectral peaks and Bayesian estimation of peak-function parameters. Numerical experiments demonstrate that the GPU-parallelized SMCS achieves speedups exceeding 500x over CPU-parallelized replica exchange Monte Carlo (REMC). The method is validated on artificial data designed to emulate X-ray photoelectron spectroscopy (XPS) and X-ray diffraction (XRD) measurements, as well as on real experimental spectra. As measurement techniques such as microscopic spectroscopy and in-situ methods continue to drive rapid growth in the volume of spectral data, the proposed approach offers a practical computational foundation for advanced analysis of individual datasets.

stat.CO↗

arXiv2026

Sequential Exchange Monte Carlo: A Sampling Method for Bayesian Data Analysis without Parameter Tuning

Bayesian data analysis is widely used across many disciplines, and representative examples in materials science include spectral analysis and sparse modeling. In such applications, the underlying models often become complex and yield multimodal posterior distributions, making efficient sampling from multimodal distributions essential. Replica exchange Monte Carlo has been commonly employed for this purpose; however, its performance strongly depends on difficult parameter tuning, such as the design of the inverse temperature. In this study, we comparatively investigate sampling algorithms that require fewer tuning parameters for Bayesian data analysis in materials science. Specifically, we compare three approaches: non-reversible parallel tempering (NRPT), sequential Monte Carlo samplers (SMCS), and a newly proposed method, sequential exchange Monte Carlo (SEMC). Our results indicate that NRPT can require computational time for parameter tuning, while SMCS requires careful adjustment of the number of MCMC steps at each temperature level. In contrast, SEMC achieves robust convergence across a range of problem settings without additional tuning, demonstrating its practicality for Bayesian inference.

cs.IT↗

arXiv2023

Sequential Experimental Design for Spectral Measurement: Active Learning Using a Parametric Model

In this study, we demonstrate a sequential experimental design for spectral measurements by active learning using parametric models as predictors. In spectral measurements, it is necessary to reduce the measurement time because of sample fragility and high energy costs. To improve the efficiency of experiments, sequential experimental designs are proposed, in which the subsequent measurement is designed by active learning using the data obtained before the measurement. Conventionally, parametric models are employed in data analysis; when employed for active learning, they are expected to afford a sequential experimental design that improves the accuracy of data analysis. However, due to the complexity of the formulas, a sequential experimental design using general parametric models has not been realized. Therefore, we applied Bayesian inference-based data analysis using the exchange Monte Carlo method to realize a sequential experimental design with general parametric models. In this study, we evaluated the effectiveness of the proposed method by applying it to Bayesian spectral deconvolution and Bayesian Hamiltonian selection in X-ray photoelectron spectroscopy. Using numerical experiments with artificial data, we demonstrated that the proposed method improves the accuracy of model selection and parameter estimation while reducing the measurement time compared with the results achieved without active learning or with active learning using the Gaussian process regression.

cs.LG↗

arXiv2023

Bayesian Inference of Absorption Spectra Based on Binomial Distribution

In this paper, we propose a Bayesian spectral deconvolution method for absorption spectra. In conventional analysis, the noise mechanism of absorption spectral data is never considered appropriately. In that analysis, the least-squares method, which assumes Gaussian noise from the perspective of Bayesian statistics, is frequently used. Since Bayesian inference is possible by introducing an appropriate noise model for the data, we consider the absorption process of a single photon to be a Bernoulli trial and develop a Bayesian spectral deconvolution method based on binomial distribution. We have evaluated our method on artificial data under several conditions by numerical experiments. The results show that our method not only allows us to estimate parameters with high accuracy from absorption spectral data, but also to infer them even from absorption spectral data with large absorption rates where the spectral structure is flattened, which was previously impossible to analyze.

stat.ME↗