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Tomotaka Oroguchi

Publications and source records attributed to Tomotaka Oroguchi.

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Manifold-based transformation of probability distributions: application to the inverse problem of reconstructing distributions from experimental data

Information geometry is a mathematical framework that elucidates the manifold structure of the probability distribution space (p-space), providing a systematic approach to transforming probability distributions (PDs). In this study, we utilized information geometry to address the inverse problems associated with reconstructing PDs from experimental data. Our initial finding is that the Kullback-Leibler divergence, often considered non-metric owing to its asymmetry, can serve as a valid metric under specific geometric conditions on the manifold. Based on this finding, we formulated the manifold-based gradient descent (MBGD) method, which was employed to visualize the internal structures -- represented as PDs -- of two types of systems: those with static constituent elements and those with dynamic state transitions. Through the application of MBGD, we successfully reconstructed the underlying PDs for both types of systems, outperforming the standard gradient descent methods that neglect the manifold structure of p-space. Therefore, the present results demonstrate the essentiality of accounting for the manifold structure of p-space in the inverse problems of reconstructing PDs. The ability of MBGD to accurately reconstruct PDs for systems with dynamic state transitions underscores its potential to provide valuable physical insights by visualizing internal structures.

physics.data-an

Single-shot 3D structure determination of nanocrystals with femtosecond X-ray free electron laser pulses

Coherent diffraction imaging (CDI) using synchrotron radiation, X-ray free electron lasers (X-FELs), high harmonic generation, soft X-ray lasers, and optical lasers has found broad applications across several disciplines. An active research direction in CDI is to determine the structure of single particles with intense, femtosecond X-FEL pulses based on diffraction-before-destruction scheme. However, single-shot 3D structure determination has not been experimentally realized yet. Here we report the first experimental demonstration of single-shot 3D structure determination of individual nanocrystals using ~10 femtosecond X-FEL pulses. Coherent diffraction patterns are collected from high-index-faceted nanocrystals, each struck by a single X-FEL pulse. Taking advantage of the symmetry of the nanocrystal, we reconstruct the 3D structure of each nanocrystal from a single-shot diffraction pattern at ~5.5 nm resolution. As symmetry exists in many nanocrystals and virus particles, this method can be applied to 3D structure studies of such particles at nanometer resolution on femtosecond time scales.

physics.optics