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Tomoya Kojima

Publications and source records attributed to Tomoya Kojima.

3 recordsLinked to original sources

Composition-agnostic prediction of self-assembly in multicomponent amphiphile mixtures from molecular structure

Predicting self-assembly in multi-component amphiphilic systems is challenging due to the complexity of intercomponent interactions and the combinatorial growth of possible formulations. In this study, we develop a unified machine-learning framework that directly predicts self-assembly behavior from the molecular structures of constituent components, independent of the number or identity of those components. We extend the critical packing parameter (CPP) to multi-component systems and generate a large dataset of self-assembled morphologies using dissipative particle dynamics (DPD) simulations. By systematically evaluating twelve combinations of feature extraction methods and model architectures, we find that models incorporating a fully connected graph convolutional network (GCN) layer achieve superior performance, with the GCN-GCN architecture accurately capturing both intramolecular relationships and intercomponent interactions. Notably, this model exhibits strong extrapolative capability: it accurately predicts CPP values for five-component mixtures even when trained only on systems with fewer components, and it maintains high accuracy for mixtures composed of molecular species that are entirely absent from the training data. These results demonstrate that a composition-agnostic predictive framework can enable efficient virtual screening and provide a foundation for the rational design of complex amphiphilic materials.

cond-mat.soft

The Cosmic Infrared Background Experiment-2: An Intensity Mapping Optimized Sounding-rocket Payload to Understand the Near-IR Extragalactic Background Light

The background light produced by emission from all sources over cosmic history is a powerful diagnostic of structure formation and evolution. At near-infrared wavelengths, this extragalactic background light (EBL) is comprised of emission from galaxies stretching all the way back to the first-light objects present during the Epoch of Reionization. The Cosmic Infrared Background Experiment 2 (CIBER-2) is a sounding-rocket experiment designed to measure both the absolute photometric brightness of the EBL over 0.5 - 2.0 microns and perform an intensity mapping measurement of EBL spatial fluctuations in six broad bands over the same wavelength range. CIBER-2 comprises a 28.5 cm, 80K telescope that images several square degrees to three separate cameras. Each camera is equipped with an HAWAII-2RG detector covered by an assembly that combines two broadband filters and a linear-variable filter, which perform the intensity mapping and absolute photometric measurements, respectively. CIBER-2 has flown three times: an engineering flight in 2021; a terminated launch in 2023; and a successful science flight in 2024. In this paper, we review the science case for the experiment; describe the factors motivating the instrument design; review the optical, mechanical, and electronic implementation of the instrument; present preflight laboratory characterization measurements; and finally assess the instrument's performance in flight.

astro-ph.IM

Machine learning prediction of self-assembly and analysis of molecular structure dependence on the critical packing parameter

Amphiphilic molecules spontaneously form self-assembly structures based on physical conditions such as molecular structure, concentration, and temperature. These structures exhibit various useful functions according to their morphology. The concept of the critical packing parameter serves to correlate self-organized structures with chemical composition. However, unless both molecular arrangement and self-assembly patterns are understood, direct computational utilization for molecular design remains challenging. In this study, we attempt to predict the self-assembled structure of a molecule directly from its chemical structure and analyze factors influencing it using machine learning. Dissipative particle dynamics simulations were used to reproduce many self-assembly structures composed of various chemical structures, and their critical packing parameters were calculated. A machine learning model was built using the chemical structures as input data and the critical packing parameters as output data.As a result, both Random Forest and a type of Recurrent Neural Network known as GRU demonstrated high predictive accuracy. It has been revealed through feature importance analysis and dependence on sample size that the amphiphilic nature of molecules significantly influences the self-assembly structures. Additionally, the importance of selecting an appropriate molecular structure representation for each algorithm has been emphasized. The results of this research will help to further streamline product development in the fields of materials science, materials chemistry, and medical materials.

cond-mat.mtrl-sci