arXiv subjects

Tong Qiu

Publications and source records attributed to Tong Qiu.

7 recordsLinked to original sources

arXiv2026

AcadGIS: A Single-Import Python Package for Reproducible, Publication-Ready Academic Maps

Academic and project maps are often produced through a fragmented workflow: researchers locate boundaries, manage shapefiles, join tabular data, assemble locator insets, add cartographic decorations, and export figures through desktop GIS or multi-package Python scripts. This creates an accessibility barrier for non-GIS users and a reproducibility problem when data sources, styling choices, and manual edits are not captured in executable form. We present AcadGIS, a free and open-source Python package that creates publication-oriented research maps from high-level commands under one namespace, import acadgis as agis. AcadGIS provides place-name boundary access, automated study-area locator layouts, thematic cartography, raster and vector layers, curated Earth-observation products, terrain and hydrology context, and configurable PNG, PDF, and SVG export without requiring desktop GIS expertise or hand-managed shapefiles. Its design combines one-import access to the scientific-Python stack, publication-oriented defaults with progressive control, local caching, source attribution, and figure specifications based on code, named data, and a pinned package version. Through three representative use cases, we demonstrate how common paper, thesis, and project maps can be expressed as compact, inspectable scripts. Source code: https://github.com/riponcm/AcadGIS.

cs.MS↗

arXiv2026

PROJECTMEM: A Local-First, Event-Sourced Memory and Judgment Layer for AI Coding Agents

AI coding assistants now support a growing share of software work, from quick scripts to production applications. Yet these agents remain largely stateless: each new session re-reads project files, re-derives prior decisions, and - most costly - may repeat debugging attempts that already failed. Reconstructing this context can consume an estimated 5,000-20,000 tokens per session; the bottleneck is often not model capability but missing project memory. We present projectmem, an open-source, local-first memory and judgment layer for AI coding agents. projectmem records development as an append-only, plain-text event log of typed events - issues, attempts, fixes, decisions, and notes - and deterministically projects that log into compact, AI-readable summaries served through the Model Context Protocol (MCP). Beyond storage, projectmem adds a deterministic pre-action gate that warns an agent before it repeats a previously failed fix or edits a known-fragile file. We frame this as Memory-as-Governance: memory that does not merely answer the agent but acts on its next action. The system runs fully offline with no telemetry; its immutable log also serves as a provenance trail for reproducible, auditable AI-assisted development. projectmem ships as a three-dependency Python package (14 MCP tools, 19 CLI commands, 37 automated tests) and is evaluated through a two-month self-study across 10 projects comprising 207 logged events. Source code: https://github.com/riponcm/projectmem.

cs.AI↗

arXiv2024

Deep and Dynamic Metabolic and Structural Imaging in Living Tissues

Label-free imaging through two-photon autofluorescence (2PAF) of NAD(P)H allows for non-destructive and high-resolution visualization of cellular activities in living systems. However, its application to thick tissues and organoids has been restricted by its limited penetration depth within 300 $\mu$m, largely due to tissue scattering at the typical excitation wavelength (~750 nm) required for NAD(P)H. Here, we demonstrate that the imaging depth for NAD(P)H can be extended to over 700 $\mu$m in living engineered human multicellular microtissues by adopting multimode fiber (MMF)-based low-repetition-rate high-peak-power three-photon (3P) excitation of NAD(P)H at 1100 nm. This is achieved by having over 0.5 MW peak power at the band of 1100$\pm$25 nm through adaptively modulating multimodal nonlinear pulse propagation with a compact fiber shaper. Moreover, the 8-fold increase in pulse energy at 1100 nm enables faster imaging of monocyte behaviors in the living multicellular models. These results represent a significant advance for deep and dynamic metabolic and structural imaging of intact living biosystems. The modular design (MMF with a slip-on fiber shaper) is anticipated to allow wide adoption of this methodology for demanding in vivo and in vitro imaging applications, including cancer research, autoimmune diseases, and tissue engineering.

physics.optics↗

arXiv2023

Spectral-temporal-spatial customization via modulating multimodal nonlinear pulse propagation

Multimode fibers (MMFs) have recently reemerged as attractive avenues for nonlinear effects due to their high-dimensional spatiotemporal nonlinear dynamics and scalability for high power. High-brightness MMF sources with effective control of the nonlinear processes would offer new possibilities for a wide range of applications from high-power fiber lasers, to bioimaging and chemical sensing, and to novel physics phenomena. Here we present a simple yet effective way of controlling nonlinear effects at high peak power levels: by leveraging not only the spatial but also the temporal degrees of freedom of the multimodal nonlinear pulse propagation in step-index MMFs using a programmable fiber shaper. This method represents the first method that enables modulation and optimization of multimodal nonlinear pulse propagation, achieving high tunability and broadband high peak power. Its potential as a nonlinear imaging source is further demonstrated by applying the MMF source to multiphoton microscopy, where widely tunable two-photon and three-photon imaging is achieved with adaptive optimization. These demonstrations highlight the effectiveness of directly modulating multimodal nonlinear pulse propagation to enhance the high-dimensional customization and optimize the high spectral brightness of MMF output. These advancements provide new possibilities for technology advances in nonlinear optics, bioimaging, spectroscopy, optical computing, and material processing.

physics.optics↗

arXiv2023

Automatic Procurement Fraud Detection with Machine Learning

Although procurement fraud is always a critical problem in almost every free market, audit departments still have a strong reliance on reporting from informed sources when detecting them. With our generous cooperator, SF Express, sharing the access to the database related with procurements took place from 2015 to 2017 in their company, our team studies how machine learning techniques could help with the audition of one of the most profound crime among current chinese market, namely procurement frauds. By representing each procurement event as 9 specific features, we construct neural network models to identify suspicious procurements and classify their fraud types. Through testing our models over 50000 samples collected from the procurement database, we have proven that such models -- despite having space for improvements -- are useful in detecting procurement frauds.

cs.LG↗

arXiv2023

Roadmap on Deep Learning for Microscopy

Through digital imaging, microscopy has evolved from primarily being a means for visual observation of life at the micro- and nano-scale, to a quantitative tool with ever-increasing resolution and throughput. Artificial intelligence, deep neural networks, and machine learning are all niche terms describing computational methods that have gained a pivotal role in microscopy-based research over the past decade. This Roadmap is written collectively by prominent researchers and encompasses selected aspects of how machine learning is applied to microscopy image data, with the aim of gaining scientific knowledge by improved image quality, automated detection, segmentation, classification and tracking of objects, and efficient merging of information from multiple imaging modalities. We aim to give the reader an overview of the key developments and an understanding of possibilities and limitations of machine learning for microscopy. It will be of interest to a wide cross-disciplinary audience in the physical sciences and life sciences.

physics.optics↗

arXiv2022

A Meta-Learning Based Gradient Descent Algorithm for MU-MIMO Beamforming

Multi-user multiple-input multiple-output (MU-MIMO) beamforming design is typically formulated as a non-convex weighted sum rate (WSR) maximization problem that is known to be NP-hard. This problem is solved either by iterative algorithms, which suffer from slow convergence, or more recently by using deep learning tools, which require time-consuming pre-training process. In this paper, we propose a low-complexity meta-learning based gradient descent algorithm. A meta network with lightweight architecture is applied to learn an adaptive gradient descent update rule to directly optimize the beamformer. This lightweight network is trained during the iterative optimization process, which we refer to as \emph{training while solving}, which removes both the training process and the data-dependency of existing deep learning based solutions.Extensive simulations show that the proposed method achieves superior WSR performance compared to existing learning-based approaches as well as the conventional WMMSE algorithm, while enjoying much lower computational load.

eess.SP↗