arXiv subjects

Toshiki Saitoh

Publications and source records attributed to Toshiki Saitoh.

12 recordsLinked to original sources

arXiv2025

Finding Order-Preserving Subgraphs

(Induced) Subgraph Isomorphism and Maximum Common (Induced) Subgraph are fundamental problems in graph pattern matching and similarity computation. In graphs derived from time-series data or protein structures, a natural total ordering of vertices often arises from their underlying structure, such as temporal sequences or amino acid sequences. This motivates the study of problem variants that respect this inherent ordering. This paper addresses Ordered (Induced) Subgraph Isomorphism (O(I)SI) and its generalization, Maximum Common Ordered (Induced) Subgraph (MCO(I)S), which seek to find subgraph isomorphisms that preserve the vertex orderings of two given ordered graphs. Our main contributions are threefold: (1) We prove that these problems remain NP-complete even when restricted to small graph classes, such as trees of depth 2 and threshold graphs. (2) We establish a gap in computational complexity between OSI and OISI on certain graph classes. For instance, OSI is polynomial-time solvable for interval graphs with their interval orderings, whereas OISI remains NP-complete under the same setting. (3) We demonstrate that the tractability of these problems can depend on the vertex ordering. For example, while OISI is NP-complete on threshold graphs, its generalization, MCOIS, can be solved in polynomial time if the specific vertex orderings that characterize the threshold graphs are provided.

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arXiv2022

Efficient Non-isomorphic Graph Enumeration Algorithms for Subclasses of Perfect Graphs

Intersection graphs are well-studied in the area of graph algorithms. Some intersection graph classes are known to have algorithms enumerating all unlabeled graphs by reverse search. Since these algorithms output graphs one by one and the numbers of graphs in these classes are vast, they work only for a small number of vertices. Binary decision diagrams (BDDs) are compact data structures for various types of data and useful for solving optimization and enumeration problems. This study proposes enumeration algorithms for five intersection graph classes, which admit $\mathrm{O}(n)$-bit string representations for their member graphs. Our algorithm for each class enumerates all unlabeled graphs with $n$ vertices over BDDs representing the binary strings in time polynomial in $n$. Moreover, our algorithms are extended to enumerate those with constraints on the maximum (bi)clique size and/or the number of edges.

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arXiv2022

Sorting Balls and Water: Equivalence and Computational Complexity

Various forms of sorting problems have been studied over the years. Recently, two kinds of sorting puzzle apps are popularized. In these puzzles, we are given a set of bins filled with colored units, balls or water, and some empty bins. These puzzles allow us to move colored units from a bin to another when the colors involved match in some way or the target bin is empty. The goal of these puzzles is to sort all the color units in order. We investigate computational complexities of these puzzles. We first show that these two puzzles are essentially the same from the viewpoint of solvability. That is, an instance is sortable by ball-moves if and only if it is sortable by water-moves. We also show that every yes-instance has a solution of polynomial length, which implies that these puzzles belong to in NP. We then show that these puzzles are NP-complete. For some special cases, we give polynomial-time algorithms. We finally consider the number of empty bins sufficient for making all instances solvable and give non-trivial upper and lower bounds in terms of the number of filled bins and the capacity of bins.

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arXiv2021

Fixed-Treewidth-Efficient Algorithms for Edge-Deletion to Intersection Graph Classes

For a graph class $\mathcal{C}$, the $\mathcal{C}$-Edge-Deletion problem asks for a given graph $G$ to delete the minimum number of edges from $G$ in order to obtain a graph in $\mathcal{C}$. We study the $\mathcal{C}$-Edge-Deletion problem for $\mathcal{C}$ the permutation graphs, interval graphs, and other related graph classes. It follows from Courcelle's Theorem that these problems are fixed parameter tractable when parameterized by treewidth. In this paper, we present concrete FPT algorithms for these problems. By giving explicit algorithms and analyzing these in detail, we obtain algorithms that are significantly faster than the algorithms obtained by using Courcelle's theorem.

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arXiv2018

Enumerating All Subgraphs without Forbidden Induced Subgraphs via Multivalued Decision Diagrams

We propose a general method performed over multivalued decision diagrams that enumerates all subgraphs of an input graph that are characterized by input forbidden induced subgraphs. Our method combines elaborations of classical set operations and the developing construction technique, called the frontier based search, for multivalued decision diagrams. Using the algorithm, we enumerated all the chordal graphs of size at most 10 on multivalued decision diagrams.

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arXiv2018

Swapping Colored Tokens on Graphs

We investigate the computational complexity of the following problem. We are given a graph in which each vertex has an initial and a target color. Each pair of adjacent vertices can swap their current colors. Our goal is to perform the minimum number of swaps so that the current and target colors agree at each vertex. When the colors are chosen from {1,2,...,c}, we call this problem c-Colored Token Swapping since the current color of a vertex can be seen as a colored token placed on the vertex. We show that c-Colored Token Swapping is NP-complete for c = 3 even if input graphs are restricted to connected planar bipartite graphs of maximum degree 3. We then show that 2-Colored Token Swapping can be solved in polynomial time for general graphs and in linear time for trees. Besides, we show that, the problem for complete graphs is fixed-parameter tractable when parameterized by the number of colors, while it is known to be NP-complete when the number of colors is unbounded.

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arXiv2017

The Time Complexity of Permutation Routing via Matching, Token Swapping and a Variant

The problems of Permutation Routing via Matching and Token Swapping are reconfiguration problems on graphs. This paper is concerned with the complexity of those problems and a colored variant. For a given graph where each vertex has a unique token on it, those problems require to find a shortest way to modify a token placement into another by swapping tokens on adjacent vertices. While all pairs of tokens on a matching can be exchanged at once in Permutation Routing via Matching, Token Swapping allows only one pair of tokens can be swapped. In the colored version, vertices and tokens are colored and the goal is to relocate tokens so that each vertex has a token of the same color. We investigate the time complexity of several restricted cases of those problems and show when those problems become tractable and remain intractable.

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arXiv2014

Computational Complexity of Competitive Diffusion on (Un)weighted Graphs

Consider an undirected graph modeling a social network, where the vertices represent users, and the edges do connections among them. In the competitive diffusion game, each of a number of players chooses a vertex as a seed to propagate his/her opinion, and then it spreads along the edges in the graphs. The objective of every player is to maximize the number of vertices the opinion infects. In this paper, we investigate a computational problem of asking whether a pure Nash equilibrium exists in the competitive diffusion game on unweighed and weighted graphs, and present several negative and positive results. We first prove that the problem is W[1]-hard when parameterized by the number of players even for unweighted graphs. We also show that the problem is NP-hard even for series-parallel graphs with positive integer weights, and is NP-hard even for forests with arbitrary integer weights. Furthermore, we show that the problem for forest of paths with arbitrary weights is solvable in pseudo-polynomial time; and it is solvable in quadratic time if a given graph is unweighted. We also prove that the problem for chain, cochain, and threshold graphs with arbitrary integer weights is solvable in polynomial time.

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arXiv2014

Extending Partial Representations of Proper and Unit Interval Graphs

The recently introduced problem of extending partial interval representations asks, for an interval graph with some intervals pre-drawn by the input, whether the partial representation can be extended to a representation of the entire graph. In this paper, we give a linear-time algorithm for extending proper interval representations and an almost quadratic-time algorithm for extending unit interval representations. We also introduce the more general problem of bounded representations of unit interval graphs, where the input constrains the positions of some intervals by lower and upper bounds. We show that this problem is NP-complete for disconnected input graphs and give a polynomial-time algorithm for the special class of instances, where the ordering of the connected components of the input graph along the real line is prescribed. This includes the case of partial representation extension. The hardness result sharply contrasts the recent polynomial-time algorithm for bounded representations of proper interval graphs [Balko et al. ISAAC'13]. So unless $\text{P} = \text{NP}$, proper and unit interval representations have vastly different structure. This explains why partial representation extension problems for these different types of representations require substantially different techniques.

cs.DM↗

arXiv2014

Extending Partial Representations of Interval Graphs

Interval graphs are intersection graphs of closed intervals of the real-line. The well-known computational problem, called recognition, asks whether an input graph $G$ can be represented by closed intervals, i.e., whether $G$ is an interval graph. There are several linear-time algorithms known for recognizing interval graphs, the oldest one is by Booth and Lueker [J. Comput. System Sci., 13 (1976)] based on PQ-trees. In this paper, we study a generalization of recognition, called partial representation extension. The input of this problem consists of a graph $G$ with a partial representation $\cal R'$ fixing the positions of some intervals. The problem asks whether it is possible to place the remaining interval and create an interval representation $\cal R$ of the entire graph $G$ extending $\cal R'$. We generalize the characterization of interval graphs by Fulkerson and Gross [Pac. J. Math., 15 (1965)] to extendible partial representations. Using it, we give a linear-time algorithm for partial representation extension based on a reordering problem of PQ-trees.

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arXiv2013

Extending Partial Representations of Subclasses of Chordal Graphs

Chordal graphs are intersection graphs of subtrees of a tree T. We investigate the complexity of the partial representation extension problem for chordal graphs. A partial representation specifies a tree T' and some pre-drawn subtrees of T'. It asks whether it is possible to construct a representation inside a modified tree T which extends the partial representation (i.e, keeps the pre-drawn subtrees unchanged). We consider four modifications of T' and get vastly different problems. In some cases, it is interesting to consider the complexity even if just T' is given and no subtree is pre-drawn. Also, we consider three well-known subclasses of chordal graphs: Proper interval graphs, interval graphs and path graphs. We give an almost complete complexity characterization. We further study the parametrized complexity of the problems when parametrized by the number of pre-drawn subtrees, the number of components and the size of the tree T'. We describe an interesting relation with integer partition problems. The problem Partition is used for all NP-completeness reductions. The extension of interval graphs when the space in T' is limited is "equivalent" to the BinPacking problem.

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arXiv2012

Efficient Enumeration of the Directed Binary Perfect Phylogenies from Incomplete Data

We study a character-based phylogeny reconstruction problem when an incomplete set of data is given. More specifically, we consider the situation under the directed perfect phylogeny assumption with binary characters in which for some species the states of some characters are missing. Our main object is to give an efficient algorithm to enumerate (or list) all perfect phylogenies that can be obtained when the missing entries are completed. While a simple branch-and-bound algorithm (B&B) shows a theoretically good performance, we propose another approach based on a zero-suppressed binary decision diagram (ZDD). Experimental results on randomly generated data exhibit that the ZDD approach outperforms B&B. We also prove that counting the number of phylogenetic trees consistent with a given data is #P-complete, thus providing an evidence that an efficient random sampling seems hard.

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