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Tsz Pang Yuen

Publications and source records attributed to Tsz Pang Yuen.

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Testing for sufficient follow-up in cure models with categorical covariates

In survival analysis, estimating the fraction of 'immune' or 'cured' subjects who will never experience the event of interest, requires a sufficiently long follow-up period. A few statistical tests have been proposed to test the assumption of sufficient follow-up, i.e. whether the right extreme of the censoring distribution exceeds that of the survival time of the uncured subjects. However, in practice the problem remains challenging. To address this, a relaxed notion of 'practically' sufficient follow-up has been introduced recently, suggesting that the follow-up would be considered sufficiently long if the probability for the event occurring after the end of the study is very small. All these existing tests do not incorporate covariate information, which might affect the cure rate and the survival times. We extend the test for 'practically' sufficient follow-up to settings with categorical covariates. While a straightforward intersection-union type test could reject the null hypothesis of insufficient follow-up only if such hypothesis is rejected for all covariate values, in practice this approach is overly conservative and lacks power. To improve upon this, we propose a novel test procedure that relies on the test decision for one properly chosen covariate value. Our approach relies on the assumption that the conditional density of the uncured survival time is a non-increasing function of time in the tail region. We show that both methods yield tests of asymptotically level $α$ and investigate their finite sample performance through simulations. The practical application of the methods is illustrated using a skin melanoma dataset.

stat.ME

Testing for sufficient follow-up in survival data with a cure fraction

In order to estimate the proportion of `immune' or `cured' subjects who will never experience failure, a sufficiently long follow-up period is required. Several statistical tests have been proposed in the literature for assessing the assumption of sufficient follow-up, meaning that the study duration is longer than the support of the survival times for the uncured subjects. These tests do not perform satisfactorily, especially in terms of Type I error. In addition, they are constructed based on the assumption that the survival time for the uncured subjects has a compact support, i.e. the existence of a `cure time'. However, for practical purposes, the assumption of `cure time' is not realistic and the follow-up would be considered sufficiently long if the probability for the event to happen after the end of the study is very small. Based on this observation, we formulate a more relaxed notion of `practically' sufficient follow-up characterized by the quantiles of the distribution and develop a novel nonparametric statistical test. The proposed method relies mainly on the assumption of a non-increasing density function in the tail of the distribution. The test is then based on a shape constrained density estimator such as the Grenander or the kernel smoothed Grenander estimator and a bootstrap procedure is used for computation of the critical values. The performance of the test is investigated through an extensive simulation study, and the method is illustrated on breast cancer data.

stat.ME

Single-index mixture cure model under monotonicity constraints

We consider survival data in the presence of a cure fraction, meaning that some subjects will never experience the event of interest. We assume a mixture cure model consisting of two sub-models: one for the probability of being uncured (incidence) and one for the survival of the uncured subjects (latency). Various approaches, ranging from parametric to nonparametric, have been used to model the effect of covariates on the incidence, with the logistic model being the most common one. We propose a monotone single-index model for the incidence and introduce a new estimation method that is based on the profile maximum likelihood approach and techniques from isotonic regression. The monotone single-index structure relaxes the parametric logistic assumption while maintaining interpretability of the regression coefficients. We investigate the consistency of the proposed estimator and show through a simulation study that, when the monotonicity assumption is satisfied, it performs better compared to the non-constrained single-index/Cox mixture cure model. To illustrate its practical use, we use the new method to study melanoma cancer survival data.

stat.ME