Searcharxiv⌕ Search

arXiv subjects

Tugba Akinci D'Antonoli

Publications and source records attributed to Tugba Akinci D'Antonoli.

2 recordsLinked to original sources

Cross Modality Image Translation In Medical Imaging Using Generative Frameworks

Magnetic Resonance Imaging (MRI), Computed Tomography (CT), and Positron Emission Tomography (PET) provide complementary information about tissues. Medical image-to-image (I2I) translation enables virtual scanning by synthesizing a target modality from a source one without requiring an additional acquisition. Despite growing interest, many methods operate on 2D slices, are evaluated on isolated tasks under different experimental settings, and lack clinically oriented assessment. This work presents a reproducible benchmark for 3D I2I translation in oncological imaging that compares seven generative models: three Generative Adversarial Networks (Pix2Pix, CycleGAN, and SRGAN) and four latent models (Latent Diffusion Model, Latent Diffusion Model+ControlNet, Brownian Bridge, and Flow Matching). The benchmark comprises 77 experiments across eleven configurations drawn from five datasets, covering three anatomical regions (head/neck, lung, and pelvis) and four translation directions (cone-beam CT to CT, MRI to CT, CT to PET, and T2-weighted MRI to T2-FLAIR). Under the evaluated configurations, SRGAN achieves the highest quantitative image fidelity across all tasks, while latent models perform less well, due to information loss introduced by the variational autoencoder. A tumor-level analysis reveals that all models struggle with small lesions and that, in CT to PET synthesis, models reproduce tumor shape more reliably than tracer uptake values. A Visual Turing test involving 17 physicians, including 15 radiologists, shows near-chance classification accuracy (56.7\%), suggesting that experts struggle to distinguish real from synthetic volumes under the viewing conditions of the study. Expert preferences do not follow quantitative rankings, exposing a dissociation between quantitative metrics and clinical preference.

cs.CV↗

TotalSegmentator MRI: Robust Sequence-independent Segmentation of Multiple Anatomic Structures in MRI

Since the introduction of TotalSegmentator CT, there is demand for a similar robust automated MRI segmentation tool that can be applied across all MRI sequences and anatomic structures. In this retrospective study, a nnU-Net model (TotalSegmentator) was trained on MRI and CT examinations to segment 80 anatomic structures relevant for use cases such as organ volumetry, disease characterization, surgical planning and opportunistic screening. Examinations were randomly sampled from routine clinical studies to represent real-world examples. Dice scores were calculated between the predicted segmentations and expert radiologist reference standard segmentations to evaluate model performance on an internal test set, two external test sets and against two publicly available models, and TotalSegmentator CT. The model was applied to an internal dataset containing abdominal MRIs to investigate age-dependent volume changes. A total of 1143 examinations (616 MRIs, 527 CTs) (median age 61 years, IQR 50-72) were split into training (n=1088, CT and MRI) and an internal test set (n=55; only MRI), two external test sets (AMOS, n=20; CHAOS, n=20; only MRI), and an internal aging-study dataset of 8672 abdominal MRIs (median age 59 years, IQR 45-70) were included. The model showed a Dice Score of 0.839 on the internal test set and outperformed two other models (Dice Score, 0.862 versus 0.759; and 0.838 versus 0.560; p<.001 for both). The proposed open-source, easy-to-use model allows for automatic, robust segmentation of 80 structures, extending the capabilities of TotalSegmentator to MRIs of any sequence. The ready-to-use online tool is available at https://totalsegmentator.com, the model at https://github.com/wasserth/TotalSegmentator, and the dataset at https://zenodo.org/records/14710732.

eess.IV↗