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Tuong Phung

Publications and source records attributed to Tuong Phung.

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Reconstructing local environments from concise atomistic representations

Symmetry-based representations of local atomic structure, such as the power spectrum or bispectrum, are routinely used to characterize the structural diversity of datasets and as input features for atomistic machine learning. Although these descriptors systematically incorporate increasingly complex geometric correlations, it remains unclear if a given feature can be mapped back to a discrete point cloud, whether such a reconstruction is unique, and how changes in the descriptor are reflected in the underlying atomic geometry. The choice and discretization of the radial and angular bases, as well as the high dimensionality of the resulting feature vectors -- which may contain hundreds or thousands of components -- make this interpretation even more challenging. In this work, we investigate the inverse problem of recovering atomic structures from local invariant descriptors. We show that accurate reconstructions can be obtained from remarkably compact descriptors of different correlation orders, each comprising only a few tens of features. Even representations that are formally incomplete or locally ill-conditioned can be inverted to accurate geometric reconstructions of atomic environments across molecular and material datasets. Our reconstruction framework provides a general algorithmic means of identifying approximate degeneracies of invariant descriptors and recovering distinct atomic environments that cannot be distinguished by a given representation. Finally, by reconstructing atomic configurations from descriptors, we examine how perturbations in invariant descriptors of different correlation orders translate into structural distortions.

physics.comp-ph

Artificial Intelligence for Science in Quantum, Atomistic, and Continuum Systems

Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural sciences. Today, AI has started to advance natural sciences by improving, accelerating, and enabling our understanding of natural phenomena at a wide range of spatial and temporal scales, giving rise to a new area of research known as AI for science (AI4Science). Being an emerging research paradigm, AI4Science is unique in that it is an enormous and highly interdisciplinary area. Thus, a unified and technical treatment of this field is needed yet challenging. This work aims to provide a technically thorough account of a subarea of AI4Science; namely, AI for quantum, atomistic, and continuum systems. These areas aim at understanding the physical world from the subatomic (wavefunctions and electron density), atomic (molecules, proteins, materials, and interactions), to macro (fluids, climate, and subsurface) scales and form an important subarea of AI4Science. A unique advantage of focusing on these areas is that they largely share a common set of challenges, thereby allowing a unified and foundational treatment. A key common challenge is how to capture physics first principles, especially symmetries, in natural systems by deep learning methods. We provide an in-depth yet intuitive account of techniques to achieve equivariance to symmetry transformations. We also discuss other common technical challenges, including explainability, out-of-distribution generalization, knowledge transfer with foundation and large language models, and uncertainty quantification. To facilitate learning and education, we provide categorized lists of resources that we found to be useful. We strive to be thorough and unified and hope this initial effort may trigger more community interests and efforts to further advance AI4Science.

cs.LG