arXiv subjects

Udo Seifert

Publications and source records attributed to Udo Seifert.

At least 127 records · Page 7Linked to original sources

arXiv2011

Effective tension and fluctuations in active membranes

We calculate the fluctuation spectrum of the shape of a lipid vesicle or cell exposed to a nonthermal source of noise. In particular we take into account constraints on the membrane area and the volume of fluid that it encapsulates when obtaining expressions for the dependency of the membrane tension on the noise. We then investigate three possible origins of the non-thermal noise taken from the literature: A direct force, which models an external medium pushing on the membrane. A curvature force, which models a fluctuating spontaneous curvature, and a permeation force coming from an active transport of fluid through the membrane. For the direct force and curvature force cases, we compare our results to existing experiments on active membranes.

cond-mat.soft↗

arXiv2011

Thermodynamic Theory of Phase Transitions in Driven Lattice Gases

We formulate an approximate thermodynamic theory of the phase transition in driven lattice gases with attractive nearest-neighbor interactions. We construct the van der Waals equation of state for a driven system where a nonequilibrium chemical potential can be expressed as a function of density and driving field. A Maxwell's construction leads to the phase transition from a homogeneous fluid phase to the coexisting phases of gas and liquid.

cond-mat.stat-mech↗

arXiv2011

Effective Confinement as Origin of the Equivalence of Kinetic Temperature and Fluctuation-Dissipation Ratio in a Dense Shear Driven Suspension

We study response and velocity autocorrelation functions for a tagged particle in a shear driven suspension governed by underdamped stochastic dynamics. We follow the idea of an effective confinement in dense suspensions and exploit a time-scale separation between particle reorganization and vibrational motion. This allows us to approximately derive the fluctuation-dissipation theorem in a "hybrid" form involving the kinetic temperature as an effective temperature and an additive correction term. We show numerically that even in a moderately dense suspension the latter is negligible. We discuss similarities and differences with a simple toy model, a single trapped particle in shear flow.

cond-mat.stat-mech↗

arXiv2011

Dynamics and efficiency of a self-propelled, diffusiophoretic swimmer

Active diffusiophoresis - swimming through interaction with a self-generated, neutral, solute gradient - is a paradigm for autonomous motion at the micrometer scale. We study this propulsion mechanism within a linear response theory. Firstly, we consider several aspects relating to the dynamics of the swimming particle. We extend established analytical formulae to describe small swimmers, which interact with their environment on a finite lengthscale. Solute convection is also taken into account. Modeling of the chemical reaction reveals a coupling between the angular distribution of reactivity on the swimmer and the concentration field. This effect, which we term "reaction induced concentration distortion", strongly influences the particle speed. Building on these insights, we employ irreversible, linear thermodynamics to formulate an energy balance. This approach highlights the importance of solute convection for a consistent treatment of the energetics. The efficiency of swimming is calculated numerically and approximated analytically. Finally, we define an efficiency of transport for swimmers which are moving in random directions. It is shown that this efficiency scales as the inverse of the macroscopic distance over which transport is to occur.

cond-mat.stat-mech↗

arXiv2011

Approximate thermodynamic structure for driven lattice gases in contact

For a class of nonequilibrium systems, called driven lattice gases, we study what happens when two systems are kept in contact and allowed to exchange particles with the total number of particles conserved. Both for attractive and repulsive nearest-neighbor interactions among particles and for a wide range of parameter values, we find that, to a good approximation, one could define an intensive thermodynamic variable, like equilibrium chemical potential, which determines the final steady state for two initially separated driven lattice gases brought into contact. However, due to nontrivial contact dynamics, there are also observable deviations from this simple thermodynamic law. To illustrate the role of the contact dynamics, we study a variant of the zero range process and discuss how the deviations could be explained by a modified large deviation principle. We identify an additional contribution to the large deviation function, which we call the excess chemical potential, for the variant of the zero range process as well as the driven lattice gases. The excess chemical potential depends on the specifics of the contact dynamics and is in general a-priori unknown. A contact dependence implies that even though an intensive variable may equalize, the zeroth law could still be violated.

cond-mat.stat-mech↗

arXiv2010

Efficiency of surface-driven motion: nano-swimmers beat micro-swimmers

Surface interactions provide a class of mechanisms which can be employed for propulsion of micro- and nanometer sized particles. We investigate the related efficiency of externally and self-propelled swimmers. A general scaling relation is derived showing that only swimmers whose size is comparable to, or smaller than, the interaction range can have appreciable efficiency. An upper bound for efficiency at maximum power is 1/2. Numerical calculations for the case of diffusiophoresis are found to be in good agreement with analytical expressions for the efficiency.

cond-mat.soft↗

arXiv2010

Stochastic thermodynamics of single enzymes and molecular motors

For a single enzyme or molecular motor operating in an aqueous solution of non-equilibrated solute concentrations, a thermodynamic description is developed on the level of an individual trajectory of transitions between states. The concept of internal energy, intrinsic entropy and free energy for states follows from a microscopic description using one assumption on time-scale separation. A first law energy balance then allows the unique identification of the heat dissipated in one transition. Consistency with the second law on the ensemble level enforces both stochastic entropy as third contribution to the entropy change involved in one transition and the local detailed balance condition for the ratio between forward and backward rates for any transition. These results follow without assuming weak coupling between the enzyme and the solutes, ideal solution behavior or mass action law kinetics. The present approach highlights both the crucial role of the intrinsic entropy of each state and the physically questionable role of chemiostats for deriving the first law for molecular motors subject to an external force under realistic conditions.

cond-mat.stat-mech↗

arXiv2010

Nonequilibrium steady states in contact: Approximate thermodynamic structure and zero-th law for driven lattice gases

We explore driven lattice gases for the existence of an intensive thermodynamic variable which could determine "equilibration" between two nonequilibrium steady-state systems kept in weak contact. In simulations, we find that these systems satisfy surprisingly simple thermodynamic laws, such as the zero-th law and the fluctuation-response relation between the particle-number fluctuation and the corresponding susceptibility remarkably well. However at higher densities, small but observable deviations from these laws occur due to nontrivial contact dynamics and the presence of long-range spatial correlations.

cond-mat.stat-mech↗

arXiv2010

Mobility and Diffusion of a Tagged Particle in a Driven Colloidal Suspension

We study numerically the influence of density and strain rate on the diffusion and mobility of a single tagged particle in a sheared colloidal suspension. We determine independently the time-dependent velocity autocorrelation functions and, through a novel method, the response functions with respect to a small force. While both the diffusion coefficient and the mobility depend on the strain rate the latter exhibits a rather weak dependency. Somewhat surprisingly, we find that the initial decay of response and correlation functions coincide, allowing for an interpretation in terms of an 'effective temperature'. Such a phenomenological effective temperature recovers the Einstein relation in nonequilibrium. We show that our data is well described by two expansions to lowest order in the strain rate.

cond-mat.soft↗

arXiv2010

Efficiency of autonomous soft nano-machines at maximum power

We consider nano-sized artificial or biological machines working in steady state enforced by imposing non-equilibrium concentrations of solutes or by applying external forces, torques or electric fields. For unicyclic and strongly coupled multicyclic machines, efficiency at maximum power is not bounded by the linear response value 1/2. For strong driving, it can even approach the thermodynamic limit 1. Quite generally, such machines fall in three different classes characterized, respectively, as "strong and efficient", "strong and inefficient", and "balanced". For weakly coupled multicyclic machines, efficiency at maximum power has lost any universality even in the linear response regime.

cond-mat.stat-mech↗

arXiv2010

Experimental Accessibility of Generalized Fluctuation-Dissipation Relations for Nonequilibrium Steady States

We study the fluctuation-dissipation theorem for a Brownian particle driven into a nonequilibrium steady state experimentally. We validate two different theoretical variants of a generalized fluctuation-dissipation theorem. Furthermore, we demonstrate that the choice of variables crucially affects the accuracy of determining the nonequilibrium response from steady state nonequilibrium fluctuations.

cond-mat.soft↗

arXiv2010

Micro-Capsules in Shear Flow

This paper deals with flow-induced shape transitions of elastic capsules. The state of the art concerning both theory and experiments is briefly reviewed starting with dynamically induced small deformation of initially spherical capsules and the formation of wrinkles on polymerized membranes. Initially non-spherical capsules show tumbling and tank-treading motion in shear flow. Theoretical descriptions of the transition between these two types of motion assuming a fixed shape are at variance with the full capsule dynamics obtained numerically. To resolve the discrepancy, we expand the exact equations of motion for small deformations and find that shape changes play a dominant role. We classify the dynamical phase transitions and obtain numerical and analytical results for the phase boundaries as a function of viscosity contrast, shear and elongational flow rate. We conclude with perspectives on timedependent flow, on shear-induced unbinding from surfaces, on the role of thermal fluctuations, and on applying the concepts of stochastic thermodynamics to these systems.

cond-mat.soft↗

arXiv2010

Specific Adhesion of Membranes: Mapping to an Effective Bond Lattice Gas

We theoretically consider specific adhesion of a fluctuating membrane to a hard substrate via the formation of bonds between receptors attached to the substrate and ligands in the membrane. By integrating out the degrees of freedom of the membrane shape, we show that in the biologically relevant limit specific adhesion is well described by a lattice gas model, where lattice sites correspond to bond sites. We derive an explicit expression for the effective bond interactions induced by the thermal undulations of the membrane. Furthermore, we compare kinetic Monte Carlo simulations for our lattice gas model with full dynamic simulations that take into account both the shape fluctuations of the membrane and reactions between receptors and ligands at bond sites. We demonstrate that an appropriate mapping of the height dependent binding and unbinding rates in the full scheme to rates in the lattice gas model leads to good agreement.

cond-mat.soft↗

arXiv2010

Generalized Einstein or Green-Kubo relations for active biomolecular transport

For driven Markovian dynamics on a network of (biomolecular) states, the generalized mobilities, i.e., the response of any current to changes in an external parameter, are expressed by an integral over an appropriate current-current correlation function and thus related to the generalized diffusion constants. As only input, a local detailed balance condition is required typically even valid for biomolecular systems operating deep in the non-equilibrium regime.

cond-mat.stat-mech↗

arXiv2010

Nonexistence of classical diamagnetism and nonequilibrium fluctuation theorems for charged particles on a curved surface

We show that the classical Langevin dynamics for a charged particle on a closed curved surface in a time-independent magnetic field leads to the canonical distribution in the long time limit. Thus the Bohr-van Leeuwen theorem holds even for a finite system without any boundary and the average magnetic moment is zero. This is contrary to the recent claim by Kumar and Kumar (EPL, {\bf 86} (2009) 17001), obtained from numerical analysis of Langevin dynamics, that a classical charged particle on the surface of a sphere in the presence of a magnetic field has a nonzero average diamagnetic moment. We extend our analysis to a many-particle system on a curved surface and show that the nonequilibrium fluctuation theorems also hold in this geometry.

cond-mat.stat-mech↗

arXiv2010

Diffusing proteins on a fluctuating membrane: Analytical theory and simulations

Using analytical calculations and computer simulations we consider both the lateral diffusion of a membrane protein and the fluctuation spectrum of the membrane in which the protein is embedded. The membrane protein interacts with the membrane shape through its spontaneous curvature and bending rigidity. The lateral motion of the protein may be viewed as diffusion in an effective potential, hence, the effective mobility is always reduced compared to the case of free diffusion. Using a rigorous path-integral approach we derive an analytical expression for the effective diffusion coefficient for small ratios of temperature and bending rigidity, which is the biologically relevant limit. Simulations show very good quantitative agreement with our analytical result. The analysis of the correlation functions contributing to the diffusion coefficient shows that the correlations between the stochastic force of the protein and the response in the membrane shape are responsible for the reduction. Our quantitative analysis of the membrane height correlation spectrum shows an influence of the protein-membrane interaction causing a distinctly altered wave-vector dependence compared to a free membrane. Furthermore, the time correlations exhibit the two relevant timescales of the system: that of membrane fluctuations and that of lateral protein diffusion with the latter typically much longer than the former. We argue that the analysis of the long-time decay of membrane height correlations can thus provide a new means to determine the effective diffusion coefficient of proteins in the membrane.

cond-mat.soft↗

arXiv2009

Fluctuation-Dissipation Theorem in Nonequilibrium Steady States

In equilibrium, the fluctuation-dissipation theorem (FDT) expresses the response of an observable to a small perturbation by a correlation function of this variable with another one that is conjugate to the perturbation with respect to \emph{energy}. For a nonequilibrium steady state (NESS), the corresponding FDT is shown to involve in the correlation function a variable that is conjugate with respect to \emph{entropy}. By splitting up entropy production into one of the system and one of the medium, it is shown that for systems with a genuine equilibrium state the FDT of the NESS differs from its equilibrium form by an additive term involving \emph{total} entropy production. A related variant of the FDT not requiring explicit knowledge of the stationary state is particularly useful for coupled Langevin systems. The \emph{a priori} surprising freedom apparently involved in different forms of the FDT in a NESS is clarified.

cond-mat.stat-mech↗

arXiv2009

Optimal protocols for Hamiltonian and Schrödinger dynamics

For systems in an externally controllable time-dependent potential, the optimal protocol minimizes the mean work spent in a finite-time transition between given initial and final values of a control parameter. For an initially thermalized ensemble, we consider both Hamiltonian evolution for classical systems and Schrödinger evolution for quantum systems. In both cases, we show that for harmonic potentials, the optimal work is given by the adiabatic work even in the limit of short transition times. This result is counter-intuitive because the adiabatic work is substantially smaller than the work for an instantaneous jump. We also perform numerical calculations of the optimal protocol for Hamiltonian dynamics in an anharmonic quartic potential. For a two-level spin system, we give examples where the adiabatic work can be reached in either a finite or an arbitrarily short transition time depending on the allowed parameter space.

cond-mat.stat-mech↗