arXiv subjects

Varun Chandola

Publications and source records attributed to Varun Chandola.

At least 19 recordsLinked to original sources

arXiv2026

Modeling Patient Care Trajectories with Transformer Hawkes Processes

Patient healthcare utilization consists of irregularly time-stamped events, such as outpatient visits, inpatient admissions, and emergency encounters, forming individualized care trajectories. Modeling these trajectories is crucial for understanding utilization patterns and predicting future care needs, but is challenging due to temporal irregularity and severe class imbalance. In this work, we build on the Transformer Hawkes Process framework to model patient trajectories in continuous time. By combining Transformer-based history encoding with Hawkes process dynamics, the model captures event dependencies and jointly predicts event type and time-to-event. To address extreme imbalance, we introduce an imbalance-aware training strategy using inverse square-root class weighting. This improves sensitivity to rare but clinically important events without altering the data distribution. Experiments on real-world data demonstrate improved performance and provide clinically meaningful insights for identifying high-risk patient populations.

cs.LG↗

arXiv2025

2024 NSF CSSI-Cybertraining-SCIPE PI Meeting August 12 to 13, 2024, Charlotte, NC

The second annual NSF, OAC CSSI, CyberTraining and related programs PI meeting was held August 12 to 13 in Charlotte, NC, with participation from PIs or representatives of all major awards. Keynotes, panels, breakouts, and poster sessions allowed PIs to engage with each other, NSF staff, and invited experts. The 286 attendees represented 292 awards across CSSI, CyberTraining, OAC Core, CIP, SCIPE CDSE, and related programs, and presented over 250 posters. This report documents the meetings structure, findings, and recommendations, offering a snapshot of current community perspectives on cyberinfrastructure. A key takeaway is a vibrant, engaged community advancing science through CI. AI-driven research modalities complement established HPC and data centric tools. Workforce development efforts align well with the CSSI community.

cs.ET↗

arXiv2023

Large Deviations for Accelerating Neural Networks Training

Artificial neural networks (ANNs) require tremendous amount of data to train on. However, in classification models, most data features are often similar which can lead to increase in training time without significant improvement in the performance. Thus, we hypothesize that there could be a more efficient way to train an ANN using a better representative sample. For this, we propose the LAD Improved Iterative Training (LIIT), a novel training approach for ANN using large deviations principle to generate and iteratively update training samples in a fast and efficient setting. This is exploratory work with extensive opportunities for future work. The thesis presents this ongoing research work with the following contributions from this study: (1) We propose a novel ANN training method, LIIT, based on the large deviations theory where additional dimensionality reduction is not needed to study high dimensional data. (2) The LIIT approach uses a Modified Training Sample (MTS) that is generated and iteratively updated using a LAD anomaly score based sampling strategy. (3) The MTS sample is designed to be well representative of the training data by including most anomalous of the observations in each class. This ensures distinct patterns and features are learnt with smaller samples. (4) We study the classification performance of the LIIT trained ANNs with traditional batch trained counterparts.

cs.LG↗

arXiv2022

Geo-Adaptive Deep Spatio-Temporal predictive modeling for human mobility

Deep learning approaches for spatio-temporal prediction problems such as crowd-flow prediction assumes data to be of fixed and regular shaped tensor and face challenges of handling irregular, sparse data tensor. This poses limitations in use-case scenarios such as predicting visit counts of individuals' for a given spatial area at a particular temporal resolution using raster/image format representation of the geographical region, since the movement patterns of an individual can be largely restricted and localized to a certain part of the raster. Additionally, current deep-learning approaches for solving such problem doesn't account for the geographical awareness of a region while modelling the spatio-temporal movement patterns of an individual. To address these limitations, there is a need to develop a novel strategy and modeling approach that can handle both sparse, irregular data while incorporating geo-awareness in the model. In this paper, we make use of quadtree as the data structure for representing the image and introduce a novel geo-aware enabled deep learning layer, GA-ConvLSTM that performs the convolution operation based on a novel geo-aware module based on quadtree data structure for incorporating spatial dependencies while maintaining the recurrent mechanism for accounting for temporal dependencies. We present this approach in the context of the problem of predicting spatial behaviors of an individual (e.g., frequent visits to specific locations) through deep-learning based predictive model, GADST-Predict. Experimental results on two GPS based trace data shows that the proposed method is effective in handling frequency visits over different use-cases with considerable high accuracy.

cs.LG↗

arXiv2022

An Ensemble-Based Deep Framework for Estimating Thermo-Chemical State Variables from Flamelet Generated Manifolds

Complete computation of turbulent combustion flow involves two separate steps: mapping reaction kinetics to low-dimensional manifolds and looking-up this approximate manifold during CFD run-time to estimate the thermo-chemical state variables. In our previous work, we showed that using a deep architecture to learn the two steps jointly, instead of separately, is 73% more accurate at estimating the source energy, a key state variable, compared to benchmarks and can be integrated within a DNS turbulent combustion framework. In their natural form, such deep architectures do not allow for uncertainty quantification of the quantities of interest: the source energy and key species source terms. In this paper, we expand on such architectures, specifically ChemTab, by introducing deep ensembles to approximate the posterior distribution of the quantities of interest. We investigate two strategies of creating these ensemble models: one that keeps the flamelet origin information (Flamelets strategy) and one that ignores the origin and considers all the data independently (Points strategy). To train these models we used flamelet data generated by the GRI--Mech 3.0 methane mechanism, which consists of 53 chemical species and 325 reactions. Our results demonstrate that the Flamelets strategy is superior in terms of the absolute prediction error for the quantities of interest, but is reliant on the types of flamelets used to train the ensemble. The Points strategy is best at capturing the variability of the quantities of interest, independent of the flamelet types. We conclude that, overall, ChemTab Deep Ensembles allows for a more accurate representation of the source energy and key species source terms, compared to the model without these modifications.

cs.LG↗

arXiv2022

Physics Informed Machine Learning for Chemistry Tabulation

Modeling of turbulent combustion system requires modeling the underlying chemistry and the turbulent flow. Solving both systems simultaneously is computationally prohibitive. Instead, given the difference in scales at which the two sub-systems evolve, the two sub-systems are typically (re)solved separately. Popular approaches such as the Flamelet Generated Manifolds (FGM) use a two-step strategy where the governing reaction kinetics are pre-computed and mapped to a low-dimensional manifold, characterized by a few reaction progress variables (model reduction) and the manifold is then ``looked-up'' during the runtime to estimate the high-dimensional system state by the flow system. While existing works have focused on these two steps independently, in this work we show that joint learning of the progress variables and the look--up model, can yield more accurate results. We build on the base formulation and implementation ChemTab to include the dynamically generated Themochemical State Variables (Lower Dimensional Dynamic Source Terms). We discuss the challenges in the implementation of this deep neural network architecture and experimentally demonstrate it's superior performance.

cs.LG↗

arXiv2022

Mutual Information Scoring: Increasing Interpretability in Categorical Clustering Tasks with Applications to Child Welfare Data

Youth in the American foster care system are significantly more likely than their peers to face a number of negative life outcomes, from homelessness to incarceration. Administrative data on these youth have the potential to provide insights that can help identify ways to improve their path towards a better life. However, such data also suffer from a variety of biases, from missing data to reflections of systemic inequality. The present work proposes a novel, prescriptive approach to using these data to provide insights about both data biases and the systems and youth they track. Specifically, we develop a novel categorical clustering and cluster summarization methodology that allows us to gain insights into subtle biases in existing data on foster youth, and to provide insight into where further (often qualitative) research is needed to identify potential ways of assisting youth.

cs.CY↗

arXiv2022

ChemTab: A Physics Guided Chemistry Modeling Framework

Modeling of turbulent combustion system requires modeling the underlying chemistry and the turbulent flow. Solving both systems simultaneously is computationally prohibitive. Instead, given the difference in scales at which the two sub-systems evolve, the two sub-systems are typically (re)solved separately. Popular approaches such as the Flamelet Generated Manifolds (FGM) use a two-step strategy where the governing reaction kinetics are pre-computed and mapped to a low-dimensional manifold, characterized by a few reaction progress variables (model reduction) and the manifold is then "looked-up" during the run-time to estimate the high-dimensional system state by the flow system. While existing works have focused on these two steps independently, we show that joint learning of the progress variables and the look-up model, can yield more accurate results. We propose a deep neural network architecture, called ChemTab, customized for the joint learning task and experimentally demonstrate its superiority over existing state-of-the-art methods.

cs.LG↗

arXiv2021

Anomaly Detection for High-Dimensional Data Using Large Deviations Principle

Most current anomaly detection methods suffer from the curse of dimensionality when dealing with high-dimensional data. We propose an anomaly detection algorithm that can scale to high-dimensional data using concepts from the theory of large deviations. The proposed Large Deviations Anomaly Detection (LAD) algorithm is shown to outperform state of art anomaly detection methods on a variety of large and high-dimensional benchmark data sets. Exploiting the ability of the algorithm to scale to high-dimensional data, we propose an online anomaly detection method to identify anomalies in a collection of multivariate time series. We demonstrate the applicability of the online algorithm in identifying counties in the United States with anomalous trends in terms of COVID-19 related cases and deaths. Several of the identified anomalous counties correlate with counties with documented poor response to the COVID pandemic.

cs.LG↗

arXiv2021

From images in the wild to video-informed image classification

Image classifiers work effectively when applied on structured images, yet they often fail when applied on images with very high visual complexity. This paper describes experiments applying state-of-the-art object classifiers toward a unique set of images in the wild with high visual complexity collected on the island of Bali. The text describes differences between actual images in the wild and images from Imagenet, and then discusses a novel approach combining informational cues particular to video with an ensemble of imperfect classifiers in order to improve classification results on video sourced images of plants in the wild.

cs.CV↗

arXiv2020

Learning Manifolds from Non-stationary Streaming Data

Streaming adaptations of manifold learning based dimensionality reduction methods, such as Isomap, are based on the assumption that a small initial batch of observations is enough for exact learning of the manifold, while remaining streaming data instances can be cheaply mapped to this manifold. However, there are no theoretical results to show that this core assumption is valid. Moreover, such methods typically assume that the underlying data distribution is stationary. Such methods are not equipped to detect, or handle, sudden changes or gradual drifts in the distribution that may occur when the data is streaming. We present theoretical results to show that the quality of a manifold asymptotically converges as the size of data increases. We then show that a Gaussian Process Regression (GPR) model, that uses a manifold-specific kernel function and is trained on an initial batch of sufficient size, can closely approximate the state-of-art streaming Isomap algorithms. The predictive variance obtained from the GPR prediction is then shown to be an effective detector of changes in the underlying data distribution. Results on several synthetic and real data sets show that the resulting algorithm can effectively learn lower dimensional representation of high dimensional data in a streaming setting, while identifying shifts in the generative distribution.

stat.ML↗

arXiv2019

Integrated Clustering and Anomaly Detection (INCAD) for Streaming Data (Revised)

Most current clustering based anomaly detection methods use scoring schema and thresholds to classify anomalies. These methods are often tailored to target specific data sets with "known" number of clusters. The paper provides a streaming clustering and anomaly detection algorithm that does not require strict arbitrary thresholds on the anomaly scores or knowledge of the number of clusters while performing probabilistic anomaly detection and clustering simultaneously. This ensures that the cluster formation is not impacted by the presence of anomalous data, thereby leading to more reliable definition of "normal vs abnormal" behavior. The motivations behind developing the INCAD model and the path that leads to the streaming model is discussed.

stat.ML↗

arXiv2019

Bayesian Anomaly Detection Using Extreme Value Theory

Data-driven anomaly detection methods typically build a model for the normal behavior of the target system, and score each data instance with respect to this model. A threshold is invariably needed to identify data instances with high (or low) scores as anomalies. This presents a practical limitation on the applicability of such methods, since most methods are sensitive to the choice of the threshold, and it is challenging to set optimal thresholds. We present a probabilistic framework to explicitly model the normal and anomalous behaviors and probabilistically reason about the data. An extreme value theory based formulation is proposed to model the anomalous behavior as the extremes of the normal behavior. As a specific instantiation, a joint non-parametric clustering and anomaly detection algorithm is proposed that models the normal behavior as a Dirichlet Process Mixture Model.

stat.ML↗

arXiv2019

Learning Deep Representations from Clinical Data for Chronic Kidney Disease

We study the behavior of a Time-Aware Long Short-Term Memory Autoencoder, a state-of-the-art method, in the context of learning latent representations from irregularly sampled patient data. We identify a key issue in the way such recurrent neural network models are being currently used and show that the solution of the issue leads to significant improvements in the learnt representations on both synthetic and real datasets. A detailed analysis of the improved methodology for representing patients suffering from Chronic Kidney Disease (CKD) using clinical data is provided. Experimental results show that the proposed T-LSTM model is able to capture the long-term trends in the data, while effectively handling the noise in the signal. Finally, we show that by using the latent representations of the CKD patients obtained from the T-LSTM autoencoder, one can identify unusual patient profiles from the target population.

cs.LG↗

arXiv2018

Query Log Compression for Workload Analytics

Analyzing database access logs is a key part of performance tuning, intrusion detection, benchmark development, and many other database administration tasks. Unfortunately, it is common for production databases to deal with millions or even more queries each day, so these logs must be summarized before they can be used. Designing an appropriate summary encoding requires trading off between conciseness and information content. For example: simple workload sampling may miss rare, but high impact queries. In this paper, we present LogR, a lossy log compression scheme suitable use for many automated log analytics tools, as well as for human inspection. We formalize and analyze the space/fidelity trade-off in the context of a broader family of "pattern" and "pattern mixture" log encodings to which LogR belongs. We show through a series of experiments that LogR compressed encodings can be created efficiently, come with provable information-theoretic bounds on their accuracy, and outperform state-of-art log summarization strategies.

cs.DB↗

arXiv2018

dynamicMF: A Matrix Factorization Approach to Monitor Resource Usage in High Performance Computing Systems

High performance computing (HPC) facilities consist of a large number of interconnected computing units (or nodes) that execute highly complex scientific simulations to support scientific research. Monitoring such facilities, in real-time, is essential to ensure that the system operates at peak efficiency. Such systems are typically monitored using a variety of measurement and log data which capture the state of the various components within the system at regular intervals of time. As modern HPC systems grow in capacity and complexity, the data produced by current resource monitoring tools is at a scale that it is no longer feasible to be visually monitored by analysts. We propose a method that transforms the multi-dimensional output of resource monitoring tools to a low dimensional representation that facilitates the understanding of the behavior of a High Performance Computing (HPC) system. The proposed method automatically extracts the low-dimensional signal in the data which can be used to track the system efficiency and identify performance anomalies. The method models the resource usage data as a three dimensional tensor (capturing resource usage of all compute nodes for difference resources over time). A dynamic matrix factorization algorithm, called dynamicMF, is proposed to extract a low-dimensional temporal signal for each node, which is subsequently fed into an anomaly detector. Results on resource usage data collected from the Lonestar 4 system at the Texas Advanced Computing Center show that the identified anomalies are correlated with actual anomalous events reported in the system log messages.

cs.DC↗

arXiv2018

Entropy-Isomap: Manifold Learning for High-dimensional Dynamic Processes

Scientific and engineering processes deliver massive high-dimensional data sets that are generated as non-linear transformations of an initial state and few process parameters. Mapping such data to a low-dimensional manifold facilitates better understanding of the underlying processes, and enables their optimization. In this paper, we first show that off-the-shelf non-linear spectral dimensionality reduction methods, e.g., Isomap, fail for such data, primarily due to the presence of strong temporal correlations. Then, we propose a novel method, Entropy-Isomap, to address the issue. The proposed method is successfully applied to large data describing a fabrication process of organic materials. The resulting low-dimensional representation correctly captures process control variables, allows for low-dimensional visualization of the material morphology evolution, and provides key insights to improve the process.

stat.ML↗

arXiv2018

Detecting Data Leakage from Databases on Android Apps with Concept Drift

Mobile databases are the statutory backbones of many applications on smartphones, and they store a lot of sensitive information. However, vulnerabilities in the operating system or the app logic can lead to sensitive data leakage by giving the adversaries unauthorized access to the app's database. In this paper, we study such vulnerabilities to define a threat model, and we propose an OS-version independent protection mechanism that app developers can utilize to detect such attacks. To do so, we model the user behavior with the database query workload created by the original apps. Here, we model the drift in behavior by comparing probability distributions of the query workload features over time. We then use this model to determine if the app behavior drift is anomalous. We evaluate our framework on real-world workloads of three different popular Android apps, and we show that our system was able to detect more than 90% of such attacks.

cs.CR↗