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Vid Ravnik

Publications and source records attributed to Vid Ravnik.

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Kinetic Superselectivity in Multivalent Binding

Multivalent binding employs multiple simultaneous supramolecular interactions, increasing avidity and selectivity compared with monovalent binding. While equilibrium aspects of multivalency are well characterized, non-equilibrium behavior remains poorly understood. By combining experiments on hyaluronic acid polymers with kinetic modeling based on stochastic chemical kinetics and molecular dynamics simulations, we systematically investigate the kinetics of multivalent binding. Notably, we find that both association and dissociation kinetics can be more selective than equilibrium binding. We explain this behavior using a two-step binding model featuring a combination of fast, weak and slow, strong interactions. These findings demonstrate a new approach: superselective targeting based on the association rate instead of the equilibrium state. The kinetic theory and experiments presented here provide a fundamental understanding of multivalent kinetics and establish design rules for superselective targeting in out-of-equilibrium systems.

cond-mat.soft

Designing Multivalent Copolymers for Selective Targeting of Multicomponent Surfaces

Selective targeting of membranes with a specific receptor profile is an ongoing challenge in targeted drug delivery. We investigate the adsorption of copolymers on a multicomponent receptor-covered surface using grand-canonical Monte Carlo simulations and demonstrate that polymers can be designed to target a particular receptor density profile. To achieve this, the ligand profile on the polymers should match the targeted receptor profile, and the ligand--receptor affinity should be inversely proportional to the ligand profile. While the same can be obtained using multivalent nanoparticles, the entropic effects due to polymer conformations significantly enhance the binding selectivity of multivalent polymers compared to nanoparticles. Surprisingly, the ligand distribution on the polymer plays a crucial role, whereas the persistence length does not. The optimal selectivity to the overall receptor concentration is obtained by the Poisson distribution of ligands (random copolymer), whereas the maximal selectivity to a specific receptor profile is obtained by a defined sequence of grouped alternating ligands (regular copolymer). Interestingly, the regular copolymer can become anti-selective when ligands of the same type are in homogenous blocks, showing that specific ligand distribution qualitatively affects the targeting ability. These findings suggest that sequence control is necessary to selectively target a specific density profile of membrane receptors using linear copolymers.

cond-mat.soft