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Vivek N. Prakash

Publications and source records attributed to Vivek N. Prakash.

14 recordsLinked to original sources

Glass-based physical models for tissue mechanics

Techniques from glass art and fabrication provide a controllable physical platform for studying tissue mechanics in simple organisms. Here, we use glass-based physical models to investigate tissue deformation in the marine organism Trichoplax adhaerens. Previous studies have shown that the epithelial tissues in T. adhaerens undergo large deformations and form fracture holes under mechanical loading, exhibiting a ductile-to-brittle transition at fast loading rates. To model these behaviors in a tunable and experimentally accessible system, glass is shaped into tissue-like monolayers in a glass studio, heated to its specific process temperature, and subjected to controlled stretching. Rapid cooling arrests the deformed configurations, providing snapshots of tissue-like strain states under load. Under lateral and radial stretching, we quantify changes in the area and eccentricity of individual "cells" in the glass models, and found that eccentricity increases after stretching. We further use tensegrity-based models to quantify deformations in the cellular geometry of the glass tissues, enabling direct comparison between experiments and simulations. The model captures the principal experimental deformation patterns, but underestimates the magnitude of the observed eccentricity changes. Our results demonstrate that glass-based physical models provide an experimentally accessible platform for studying tissue-scale deformation and mechanical behavior, while supporting interdisciplinary approaches that connect methods in the arts and sciences.

physics.bio-ph↗

A universal hydrodynamic transition in confined marine invertebrate larvae

The ocean is teeming with a myriad of mm-sized invertebrate planktonic larvae, which thrive in a viscous fluid environment. Many of them rely on ciliary beating to generate fluid flows for locomotion and feeding. Their larval forms, local morphologies, and ciliation patterns exhibit remarkable diversity, producing intricate and dynamic 3D flows that are notoriously difficult to characterize in laboratory settings. Traditional microscopic imaging techniques typically involve gently squeeze-confining the soft larvae between a glass slide and cover slip to study their flows in quasi-2D. However, a comprehensive hydrodynamic framework for the low-to-intermediate Reynolds number (<1) flows in quasi-2D confinement, particularly in light of their complex forms, has remained elusive. Here, we demonstrate that vortices around larvae proliferate with increasing confinement and illuminate the underlying physical mechanism. We experimentally quantify confinement-induced flows in larvae of sea stars and sea urchins. The flows exhibited strikingly universal patterns: under weak confinement, all larvae generated two vortices, whereas under strong confinement, the number of generated vortices significantly increased. The experimental observations were well captured by a low Reynolds number theoretical model based on the superposition of confined Stokeslets. Building on experiments and theory, we developed a comprehensive framework for confinement-induced flows, which suggests that vorticity dynamics are primarily determined by local morphological features, rather than solely the body plan. Our work provides fundamental insights into form-functional relationships between larval morphology and flow generation. Our findings are broadly applicable to understanding flows generated by a wide range of ciliated organisms with complex forms and morphologies, from micro- to milli-length-scales.

physics.flu-dyn↗

Non-bilaterians as Model Systems for Tissue Mechanics

In animals, epithelial tissues are barriers against the external environment, providing protection against biological, chemical, and physical damage. Depending on the animal's physiology and behavior, these tissues encounter different types of mechanical forces and need to provide a suitable adaptive response to ensure success. Therefore, understanding tissue mechanics in different contexts is an important research area. Here, we review recent tissue mechanics discoveries in a few early-divergent non-bilaterian animals -- Trichoplax adhaerens, Hydra vulgaris, and Aurelia aurita. We highlight each animal's simple body plan and biology, and unique, rapid tissue remodeling phenomena that play a crucial role in its physiology. We also discuss the emergent large-scale mechanics that arise from small-scale phenomena. Finally, we emphasize the enormous potential of these non-bilaterian animals to be model systems for further investigation in tissue mechanics.

q-bio.TO↗

Culinary fluid mechanics and other currents in food science

Innovations in fluid mechanics are leading to better food since ancient history, while creativity in cooking inspires applied and fundamental science. Here, we review how recent advances in hydrodynamics are changing food science, and we highlight how the surprising phenomena that arise in the kitchen lead to discoveries and technologies across the disciplines, including rheology, soft matter, biophysics and molecular gastronomy. This review is structured like a menu, where each course highlights different aspects of culinary fluid mechanics. Our main themes include multiphase flows, complex fluids, thermal convection, hydrodynamic instabilities, viscous flows, granular matter, porous media, percolation, chaotic advection, interfacial phenomena, and turbulence. For every topic, we first provide an introduction accessible to food professionals and scientists in neighbouring fields. We then assess the state-of-the-art knowledge, the open problems, and likely directions for future research. New gastronomic ideas grow rapidly as the scientific recipes keep improving too.

physics.pop-ph↗

Ciliary flocking and emergent instabilities enable collective agility in a non-neuromuscular animal

Effective organismal behavior responds appropriately to changes in the surrounding environment. Attaining this delicate balance of sensitivity and stability is a hallmark of the animal kingdom. By studying the locomotory behavior of a simple animal (\textit{Trichoplax adhaerens}) without muscles or neurons, here, we demonstrate how monociliated epithelial cells work collectively to give rise to an agile non-neuromuscular organism. Via direct visualization of large ciliary arrays, we report the discovery of sub-second ciliary reorientations under a rotational torque that is mediated by collective tissue mechanics and the adhesion of cilia to the underlying substrate. In a toy model, we show a mapping of this system onto an "active-elastic resonator". This framework explains how perturbations propagate information in this array as linear speed traveling waves in response to mechanical stimulus. Next, we explore the implications of parametric driving in this active-elastic resonator and show that such driving can excite mechanical 'spikes'. These spikes in collective mode amplitudes are consistent with a system driven by parametric amplification and a saturating nonlinearity. We conduct extensive numerical experiments to corroborate these findings within a polarized active-elastic sheet. These results indicate that periodic and stochastic forcing are valuable for increasing the sensitivity of collective ciliary flocking. We support these theoretical predictions via direct experimental observation of linear speed traveling waves which arise from the hybridization of spin and overdamped density waves. We map how these ciliary flocking dynamics result in agile motility via coupling between an amplified resonator and a tuning (Goldstone-like) mode of the system. This sets the stage for how activity and elasticity can self-organize into behavior which benefits the organism as a whole.

physics.bio-ph↗

Rapid behavioral transitions produce chaotic mixing by a planktonic microswimmer

Despite their vast morphological diversity, many invertebrates have similar larval forms characterized by ciliary bands, innervated arrays of beating cilia that facilitate swimming and feeding. Hydrodynamics suggests that these bands should tightly constrain the behavioral strategies available to the larvae; however, their apparent ubiquity suggests that these bands also confer substantial adaptive advantages. Here, we use hydrodynamic techniques to investigate "blinking," an unusual behavioral phenomenon observed in many invertebrate larvae in which ciliary bands across the body rapidly change beating direction and produce transient rearrangement of the local flow field. Using a general theoretical model combined with quantitative experiments on starfish larvae, we find that the natural rhythm of larval blinking is hydrodynamically optimal for inducing strong mixing of the local fluid environment due to transient streamline crossing, thereby maximizing the larvae's overall feeding rate. Our results are consistent with previous hypotheses that filter feeding organisms may use chaotic mixing dynamics to overcome circulation constraints in viscous environments, and it suggests physical underpinnings for complex neurally-driven behaviors in early-divergent animals.

physics.flu-dyn↗

Vortex arrays and ciliary tangles underlie the feeding-swimming tradeoff in starfish larvae

Many marine invertebrates have larval stages covered in linear arrays of beating cilia, which propel the animal while simultaneously entraining planktonic prey. These bands are strongly conserved across taxa spanning four major superphyla, and they are responsible for the unusual morphologies of many invertebrate larvae. However, few studies have investigated their underlying hydrodynamics. Here, we study the ciliary bands of starfish larvae, and discover a beautiful pattern of slowly-evolving vortices that surrounds the swimming animals. Closer inspection of the bands reveals unusual ciliary "tangles" analogous to topological defects that break up and re-form as the animal adjusts its swimming stroke. Quantitative experiments and modeling demonstrate that these vortices create a physical tradeoff between feeding and swimming in heterogenous environments, which manifests as distinct flow patterns or "eigen-strokes" representing each behavior---potentially implicating neuronal control of cilia. This quantitative interplay between larval form and hydrodynamic function may generalize to other invertebrates with ciliary bands, and illustrates the potential effects of active boundary conditions in other biological and synthetic systems.

physics.flu-dyn↗

The role of viscosity contrast on plume structure in laboratory modeling of mantle convection

We have conducted laboratory experiments to model important aspects of plumes in mantle convection. We focus on the role of the viscosity ratio U (between the ambient fluid and the plume fluid) in determining the plume structure and dynamics. In our experiments, we are able to capture geophysical convection regimes relevant to mantle convection both for hot spots (when U > 1) and plate-subduction (when U < 1) regimes. The planar laser induced fluorescence (PLIF) technique is used for flow visualization and characterizing the plume structures. The convection is driven by compositional buoyancy generated by the perfusion of lighter fluid across a permeable mesh and the viscosity ratio U is systematically varied over a range from 1/300 to 2500. The planform, near the bottom boundary for U=1, exhibits a well-known dendritic line plume structure. As the value of U is increased, a progressive morphological transition is observed from the dendritic-plume structure to discrete spherical plumes, accompanied with thickening of the plumes and an increase in the plume spacing. In the vertical section, mushroom-shaped plume heads at U=1 change into intermittent spherical-blob shaped plumes at high U, resembling mantle plume hot spots in mantle convection. In contrast, for low values of U (~1/300), the regime corresponds to subduction of plates in the mantle. In this regime, we observe for the first time that plumes arise from a thick boundary with cellular structure and develop into sheet-plumes. We use experimental data to quantify these morphological changes and mixing dynamics of the plumes at different regimes of U. We also compare our observations on plume spacing with various models reported in the literature by varying the viscosity ratio and the buoyancy flux.

physics.flu-dyn↗

Energy spectra in turbulent bubbly flows

We conduct experiments in a turbulent bubbly flow to study the nature of the transition between the classical $-$5/3 energy spectrum scaling for a single-phase turbulent flow and the $-$3 scaling for a swarm of bubbles rising in a quiescent liquid and of bubble-dominated turbulence. The bubblance parameter, which measures the ratio of the bubble-induced kinetic energy to the kinetic energy induced by the turbulent liquid fluctuations before bubble injection, is often used to characterise the bubbly flow. We vary the bubblance parameter from $b = \infty$ (pseudo-turbulence) to $b = 0$ (single-phase flow) over 2-3 orders of magnitude ($0.01 - 5$) to study its effect on the turbulent energy spectrum and liquid velocity fluctuations. The probability density functions (PDFs) of the liquid velocity fluctuations show deviations from the Gaussian profile for $b > 0$, i.e. when bubbles are present in the system. The PDFs are asymmetric with higher probability in the positive tails. The energy spectra are found to follow the $-$3 scaling at length scales smaller than the size of the bubbles for bubbly flows. This $-$3 spectrum scaling holds not only in the well-established case of pseudo-turbulence, but surprisingly in all cases where bubbles are present in the system ($b > 0$). Therefore, it is a generic feature of turbulent bubbly flows, and the bubblance parameter is probably not a suitable parameter to characterise the energy spectrum in bubbly turbulent flows. The physical reason is that the energy input by the bubbles passes over only to higher wave numbers, and the energy production due to the bubbles can be directly balanced by the viscous dissipation in the bubble wakes as suggested by Lance $\&$ Bataille (1991). In addition, we provide an alternative explanation by balancing the energy production of the bubbles with viscous dissipation in the Fourier space.

physics.flu-dyn↗

Wake-driven dynamics of finite-sized buoyant spheres in turbulence

Particles suspended in turbulent flows are affected by the turbulence and at the same time act back on the flow. The resulting coupling can give rise to rich variability in their dynamics. Here we report experimental results from an investigation of finite-sized buoyant spheres in turbulence. We find that even a marginal reduction in the particle's density from that of the fluid can result in strong modification of its dynamics. In contrast to classical spatial filtering arguments and predictions of particle models, we find that the particle acceleration variance increases with size. We trace this reversed trend back to the growing contribution from wake-induced forces, unaccounted for in current particle models in turbulence. Our findings highlight the need for improved multi-physics based models that account for particle wake effects for a faithful representation of buoyant-sphere dynamics in turbulence.

physics.flu-dyn↗

The clustering morphology of freely rising deformable bubbles

We investigate the clustering morphology of a swarm of freely rising deformable bubbles. A three-dimensional Voronoï analysis enables us to quantitatively distinguish between two typical clustering configurations: preferential clustering and a grid-like structure. The bubble data is obtained from direct numerical simulations (DNS) using the front-tracking method. It is found that the bubble deformation, represented by the aspect ratio χ, plays a significant role in determining which type of clustering is realized: Nearly spherical bubbles with χ<~ 1.015 form a grid-like structure, while more deformed bubbles show preferential clustering. Remarkably, this criteria for the clustering morphology holds for different diameters of the bubbles, surface tension, and viscosity of the liquid in the studied parameter regime. The mechanism of this clustering behavior is connected to the amount of vorticity generated at the bubble surfaces.

physics.flu-dyn↗

How gravity and size affect the acceleration statistics of bubbles in turbulence

We report results from the first systematic Lagrangian experimental investigation in the regime of very light (air bubbles in water) and large particles (D/η >> 1) in turbulence. Using a traversing camera setup and particle tracking, we study the Lagrangian acceleration statistics of ~3 mm diameter (D) bubbles in a water tunnel with nearly homogeneous and isotropic turbulence generated by an active-grid. The Reynolds number (Re_λ) is varied from 145 to 230, resulting in size ratios, D/η in the range of 7.3--12.5, where η is the Kolmogorov length scale. The experiments reveal that gravity increases the acceleration variance and reduces the intermittency of the PDF in the vertical direction. Once the gravity offset is subtracted, the variances of both the horizontal and vertical acceleration components are about 5\pm2 times larger than the one measured in the same flow for fluid tracers. Moreover, for these light particles, the experimental acceleration PDF shows a substantial reduction in intermittency at growing size ratios, in contrast to neutrally buoyant or heavy particles. All these results are closely matched by numerical simulations of finite-size bubbles with the Faxén corrections.

physics.flu-dyn↗

Three-dimensional Lagrangian Voronoi analysis for clustering of particles and bubbles in turbulence

Three-dimensional Voronoi analysis is used to quantify the clustering of inertial particles in homogeneous isotropic turbulence using data from numerics and experiments. We study the clustering behavior at different density ratios and particle response times (i.e. Stokes numbers St). The Probability Density Functions (PDFs) of the Voronoi cell volumes of light and heavy particles show a different behavior from that of randomly distributed particles -i.e. fluid tracers-implying that clustering is present. The standard deviation of the PDF normalized by that of randomly distributed particles is used to quantify the clustering. Light particles show maximum clustering for St around 1-2. The results are consistent with previous investigations employing other approaches to quantify the clustering. We also present the joint PDFs of enstrophy and Voronoi volumes and their Lagrangian autocorrelations. The small Voronoi volumes of light particles correspond to regions of higher enstrophy than those of heavy particles, indicating that light particles cluster in higher vorticity regions. The Lagrangian temporal autocorrelation function of Voronoi volumes shows that the clustering of light particles lasts much longer than that of heavy or neutrally buoyant particles. Due to inertial effects, the Lagrangian autocorrelation time-scale of clustered light particles is even longer than that of the enstrophy of the flow itself.

physics.flu-dyn↗

Lagrangian statistics of light particles in turbulence

We study the Lagrangian velocity and acceleration statistics of light particles (micro-bubbles in water) in homogeneous isotropic turbulence. Micro-bubbles with a diameter of 340 microns and Stokes number from 0.02 to 0.09 are dispersed in a turbulent water tunnel operated at Taylor-Reynolds numbers (Re) ranging from 160 to 265. We reconstruct the bubble trajectories by employing three-dimensional particle tracking velocimetry (PTV). It is found that the probability density functions (PDFs) of the micro-bubble acceleration show a highly non-Gaussian behavior with flatness values in the range 23-30. The acceleration flatness values show an increasing trend with Re, consistent with previous experiments (Voth et al., JFM, 2002) and numerics (Ishihara et al., JFM, 2007). These acceleration PDFs show a higher intermittency compared to tracers (Ayyalasomayajula et al., Phys. Fluids, 2008) and heavy particles (Ayyalasomayajula et al., Phys. Rev. Lett., 2006) in wind tunnel experiments. In addition, the micro-bubble acceleration autocorrelation function decorrelates slower with increasing Re. We also compare our results with experiments in von Karman flows and point-particle direct numerical simulations with periodic boundary conditions.

physics.flu-dyn↗