arXiv subjects

Vladimir A. Baulin

Publications and source records attributed to Vladimir A. Baulin.

25 records · Page 2Linked to original sources

arXiv2010

Coarse-Grained Models of Biological Membranes within the Single Chain Mean Field Theory

The Single Chain Mean Field theory is used to simulate the equilibrium structure of phospholipid membranes at the molecular level. Three levels of coarse-graining of DMPC phospholipid surfactants are present: the detailed 44-beads double tails model, the 10-beads double tails model and the minimal 3-beads model. We show that all three models are able to reproduce the essential equilibrium properties of the phospholipid bilayer, while the simplest 3-beads model is the fastest model which can describe adequately the thickness of the layer, the area per lipid and the rigidity of the membrane. The accuracy of the method in description of equilibrium structures of membranes compete with Monte Carlo simulations while the speed of computation and the mean field nature of the approach allows for straightforward applications to systems with great complexity.

cond-mat.soft↗

arXiv2006

Collision induced spatial organization of microtubules

The dynamic behavior of microtubules in solution can be strongly modified by interactions with walls or other structures. We examine here a microtubule growth model where the increase in size of the plus-end is perturbed by collisions with other microtubules. We show that such a simple mechanism of constrained growth can induce ordered structures and patterns from an initially isotropic and homogeneous suspension. First, microtubules self-organize locally in randomly oriented domains that grow and compete with each other. By imposing even a weak orientation bias, external forces like gravity or cellular boundaries may bias the domain distribution eventually leading to a macroscopic sample orientation.

cond-mat.soft↗

arXiv2005

Micellization of Sliding Polymer Surfactants

Following up a recent paper on grafted sliding polymer layers (Macromolecules 2005, 38, 1434-1441), we investigated the influence of the sliding degree of freedom on the self-assembly of sliding polymeric surfactants that can be obtained by complexation of polymers with cyclodextrins. In contrast to the micelles of quenched block copolymer surfactants, the free energy of micelles of sliding surfactants can have two minima: the first corresponding to small micelles with symmetric arm lengths, and the second corresponding to large micelles with asymmetric arm lengths. The relative sizes and concentrations of small and large micelles in the solution depend on the molecular parameters of the system. The appearance of small micelles drastically reduces the kinetic barrier signifying the fast formation of equilibrium micelles.

cond-mat.soft↗

arXiv2005

Sliding grafted polymer layers

We study theoretically the structure of sliding grafted polymer layers or SGP layers. These interfacial structures are built by attaching each polymer to the substrate with a ring-like molecule such as cyclodextrins. Such a topological grafting mode allows the chains to freely slide along the attachment point. Escape from the sliding link is prevented by bulky capping groups. We show that grafts in the mushroom regime adopt mainly symmetric configurations (with comparable branch sizes) while grafts in dense layers are highly dissymmetric so that only one branch per graft participates in the layer. Sliding layers on small colloids or star-like sliding micelles exhibit an intermediate behavior where the number of longer branches participating in the corona is independent of the total number of branches. This regime also exists for sliding surface-micelles comprising less chains but it is narrower.

cond-mat.soft↗

arXiv2003

Self-assembled aggregates in the gravitational field: growth and nematic order

The influence of the gravitational field on the reversible process of assembly and disassembly of linear aggregates is focus of this paper. Even the earth gravitational field can affect the equilibrium properties of heavy biological aggregates such as microtubules or actin filaments. The gravity gives rise to the concentration gradient which results in the distribution of aggregates of different lengths with height. Strong enough gravitational field induces the overall growth of the aggregates. The gravitational field facilitates the isotropic to nematic phase transition reflecting in a broader transition region. Coexisting phases have notedly different length distributions and the phase transition represent the interplay between the growth in the isotropic phase and the precipitation into nematic phase. The fields in an ultracentrifuge can only reinforce the effect of gravity, so the present description can be applied to a wider range of systems.

cond-mat.soft↗

arXiv2003

Self-Consistent Field Theory of Brushes of Neutral Water-Soluble Polymers

The Self-Consistent Field theory of brushes of neutral water-soluble polymers described by two-state models is formulated in terms of the effective Flory interaction parameter $χ_{eff}(T,ϕ)$ that depends on both temperature, T and the monomer volume fraction, $ϕ$. The concentration profiles, distribution of free ends and compression force profiles are obtained in the presence and in the absence of a vertical phase separation. A vertical phase separation within the layer leads to a distinctive compression force profile and a minimum in the plot of the moments of the concentration profile vs. the grafting density. The analysis is applied explicitly to the Karalstrom model. The relevance to brushes of Poly(N-isopropylacrylamide)(PNIPAM) is discussed.

cond-mat.soft↗

arXiv2003

Nematic Ordering of Rigid Rods in a Gravitational Field

The isotropic-to-nematic transition in an athermal solution of long rigid rods subject to a gravitational (or centrifugal) field is theoretically considered in the Onsager approximation. The new feature emerging in the presence of gravity is a concentration gradient which coupled with the nematic ordering. For rodlike molecules this effect becomes noticeable at centrifugal acceleration g ~ 10^3--10^4 m/s^2, while for biological rodlike objects, such as tobacco mosaic virus, TMV, the effect is important even for normal gravitational acceleration conditions. Rods are concentrated near the bottom of the vessel which sometimes leads to gravity induced nematic ordering. The concentration range corresponding to phase separation increases with increasing g. In the region of phase separation the local rod concentration, as well as the order parameter, follow a step function with height.

physics.space-ph↗