arXiv subjects

Vojtech Cermak

Publications and source records attributed to Vojtech Cermak.

3 recordsLinked to original sources

arXiv2026

Centering Ecological Goals in Automated Identification of Individual Animals

Recognizing individual animals over time is central to many ecological and conservation questions, including estimating abundance, survival, movement, and social structure. Recent advances in automated identification from images and even acoustic data suggest that this process could be greatly accelerated, yet their promise has not translated well into ecological practice. We argue that the main barrier is not the performance of the automated methods themselves, but a mismatch between how those methods are typically developed and evaluated, and how ecological data is actually collected, processed, reviewed, and used. Future progress, therefore, will depend less on algorithmic gains alone than on recognizing that the usefulness of automated identification is grounded in ecological context: it depends on what question is being asked, what data are available, and what kinds of mistakes matter. Only by centering these questions can we move toward automated identification of individuals that is not only accurate but also ecologically useful, transparent, and trustworthy.

q-bio.PE↗

arXiv2025

CzechLynx: A Dataset for Individual Identification and Pose Estimation of the Eurasian Lynx

We introduce CzechLynx, the first large-scale, open-access dataset for individual identification, pose estimation, and instance segmentation of the Eurasian lynx (Lynx lynx). CzechLynx contains 39,760 camera trap images annotated with segmentation masks, identity labels, and 20-point skeletons and covers 319 unique individuals across 15 years of systematic monitoring in two geographically distinct regions: southwest Bohemia and the Western Carpathians. In addition to the real camera trap data, we provide a large complementary set of photorealistic synthetic images and a Unity-based generation pipeline with diffusion-based text-to-texture modeling, capable of producing arbitrarily large amounts of synthetic data spanning diverse environments, poses, and coat-pattern variations. To enable systematic testing across realistic ecological scenarios, we define three complementary evaluation protocols: (i) geo-aware, (ii) time-aware open-set, and (iii) time-aware closed-set, covering cross-regional and long-term monitoring settings. With the provided resources, CzechLynx offers a unique, flexible benchmark for robust evaluation of computer vision and machine learning models across realistic ecological scenarios.

cs.CV↗

arXiv2024

FungiTastic: A multi-modal dataset and benchmark for image categorization

We introduce a new, challenging benchmark and a dataset, FungiTastic, based on fungal records continuously collected over a twenty-year span. The dataset is labelled and curated by experts and consists of about 350k multimodal observations of 6k fine-grained categories (species). The fungi observations include photographs and additional data, e.g., meteorological and climatic data, satellite images, and body part segmentation masks. FungiTastic is one of the few benchmarks that include a test set with DNA-sequenced ground truth of unprecedented label reliability. The benchmark is designed to support (i) standard closed-set classification, (ii) open-set classification, (iii) multi-modal classification, (iv) few-shot learning, (v) domain shift, and many more. We provide tailored baselines for many use cases, a multitude of ready-to-use pre-trained models on https://huggingface.co/collections/BVRA/fungitastic-66a227ce0520be533dc6403b, and a framework for model training. The documentation and the baselines are available at https://github.com/BohemianVRA/FungiTastic/ and https://www.kaggle.com/datasets/picekl/fungitastic.

cs.CV↗