arXiv subjects

Volker L. Deringer

Publications and source records attributed to Volker L. Deringer.

At least 55 records · Page 3Linked to original sources

arXiv2023

Geometrically-frustrated interactions drive structural complexity in amorphous calcium carbonate

Amorphous calcium carbonate (ACC) is an important precursor for biomineralisation in marine organisms. Among the key outstanding problems regarding ACC are how best to understand its structure and how to rationalise its metastability as an amorphous phase. Here, we report high-quality atomistic models of ACC generated by using state-of-the-art interatomic potentials to help guide fits to X-ray total scattering data. Exploiting a recently-developed inversion approach, we extract from these models the effective Ca$\boldsymbol\cdots$Ca interaction potential governing ACC formation. This potential contains minima at two competing distances, corresponding to the two different ways in which carbonate ions bridge Ca$^{2+}$-ion pairs. We reveal an unexpected mapping to the Lennard-Jones--Gauss (LJG) model normally studied in the context of computational soft-matter, with the empirical LJG parameters for ACC taking values known to promote structural complexity. In this way we show that both the complex structure of ACC and its resilience to crystallisation are actually encoded in the geometrically-frustrated effective interactions between Ca$^{\boldsymbol 2+}$ ions.

cond-mat.mtrl-sci↗

arXiv2022

Synthetic data enable experiments in atomistic machine learning

Machine-learning models are increasingly used to predict properties of atoms in chemical systems. There have been major advances in developing descriptors and regression frameworks for this task, typically starting from (relatively) small sets of quantum-mechanical reference data. Larger datasets of this kind are becoming available, but remain expensive to generate. Here we demonstrate the use of a large dataset that we have "synthetically" labelled with per-atom energies from an existing ML potential model. The cheapness of this process, compared to the quantum-mechanical ground truth, allows us to generate millions of datapoints, in turn enabling rapid experimentation with atomistic ML models from the small- to the large-data regime. This approach allows us here to compare regression frameworks in depth, and to explore visualisation based on learned representations. We also show that learning synthetic data labels can be a useful pre-training task for subsequent fine-tuning on small datasets. In the future, we expect that our open-sourced dataset, and similar ones, will be useful in rapidly exploring deep-learning models in the limit of abundant chemical data.

physics.chem-ph↗

arXiv2022

How to validate machine-learned interatomic potentials

Machine learning (ML) approaches enable large-scale atomistic simulations with near-quantum-mechanical accuracy. With the growing availability of these methods there arises a need for careful validation, particularly for physically agnostic models - that is, for potentials which extract the nature of atomic interactions from reference data. Here, we review the basic principles behind ML potentials and their validation for atomic-scale materials modeling. We discuss best practice in defining error metrics based on numerical performance as well as physically guided validation. We give specific recommendations that we hope will be useful for the wider community, including those researchers who intend to use ML potentials for materials "off the shelf".

physics.chem-ph↗

arXiv2022

Structure and Bonding in Amorphous Red Phosphorus

Amorphous red phosphorus (a-P) is one of the remaining puzzling cases in the structural chemistry of the elements. Here, we elucidate the structure, stability, and chemical bond-ing in a-P from first principles, combining machine-learning and density-functional theo-ry (DFT) methods. We show that a-P structures exist with a range of energies slightly higher than those of phosphorus nanorods, to which they are closely related, and that the stability of a-P is linked to the degree of structural relaxation and medium-range order. We thus complete the stability range of phosphorus allotropes [Angew. Chem. Int. Ed. 2014, 53, 11629] by now including the previously poorly understood amorphous phase, and we quantify the covalent and van der Waals interactions in all main phases of phos-phorus. We also study the electronic densities of states, including those of hydrogenated a-P. Beyond the present study, our structural models are expected to enable wider-ranging first-principles investigations - for example, of a-P-based battery materials.

cond-mat.mtrl-sci↗

arXiv2022

Unlocking device-scale atomistic modelling of phase-change memory materials

Quantum-accurate computer simulations play a central role in understanding phase-change materials (PCMs) for advanced memory technologies. However, direct quantum-mechanical simulations are necessarily limited to simplified models, containing no more than a few hundred or a thousand atoms. Machine learning (ML) based potential models that are "trained" on quantum-mechanical data are an emerging alternative approach, currently evolving from highly specialised to more widely applied simulation tools. Here we show that a universal, compositionally flexible ML model can describe a wide range of flagship Ge-Sb-Te PCMs under real device conditions, including non-isothermal heating and chemical disorder which are relevant for memory applications. The speed of the ML model enables atomistic simulations of multiple thermal cycles and delicate operations for neuro-inspired computing, namely, cumulative SET and iterative RESET. A device-scale capability demonstration (40 x 20 x 20 nm3) shows that the new ML potential can directly describe technologically relevant processes in PCM-based memory products. In a wider context, our work demonstrates how ML-driven materials simulations are now entering a stage where they can guide architecture design for high-performance electronic devices.

cond-mat.mtrl-sci↗

arXiv2022

Exploring the configurational space of amorphous graphene with machine-learned atomic energies

Two-dimensionally extended amorphous carbon ("amorphous graphene") is a prototype system for disorder in 2D, showing a rich and complex configurational space that is yet to be fully understood. Here we explore the nature of amorphous graphene with an atomistic machine-learning (ML) model. We create structural models by introducing defects into ordered graphene through Monte-Carlo bond switching, defining acceptance criteria using the machine-learned local, atomic energies associated with a defect, as well as the nearest-neighbor (NN) environments. We find that physically meaningful structural models arise from ML atomic energies in this way, ranging from continuous random networks to paracrystalline structures. Our results show that ML atomic energies can be used to guide Monte-Carlo structural searches in principle, and that their predictions of local stability can be linked to short- and medium-range order in amorphous graphene. We expect that the former point will be relevant more generally to the study of amorphous materials, and that the latter has wider implications for the interpretation of ML potential models.

physics.chem-ph↗

arXiv2022

Designing inorganic semiconductors with cold-rolling processability

While metals can be readily processed and reshaped by cold rolling, most bulk inorganic semiconductors are brittle materials that tend to fracture when plastically deformed. Manufacturing thin sheets and foils of inorganic semiconductors is therefore a bottleneck problem, severely restricting their use in flexible electronics applications. It was recently reported that a few single-crystalline two-dimensional van der Waals (vdW) semiconductors, such as InSe, are deformable under compressive stress. Here we demonstrate that intralayer fracture toughness can be tailored via compositional design to make inorganic semiconductors processable by cold rolling. We report systematic ab initio calculations covering a range of van der Waals semiconductors homologous to InSe, leading to material-property maps that forecast trends in both the susceptibility to interlayer slip and the intralayer fracture toughness against cracking. GaSe has been predicted, and experimentally confirmed, to be practically amenable to being rolled to large (three quarters) thickness reduction and length extension by a factor of three. Our findings open a new realm of possibility for alloy selection and design towards processing-friendly group-III chalcogenides for flexible electronic and thermoelectric applications.

cond-mat.mtrl-sci↗

arXiv2022

Indirect Learning of Interatomic Potentials for Accelerated Materials Simulations

Machine learning (ML) based interatomic potentials are emerging tools for materials simulations but require a trade-off between accuracy and speed. Here we show how one can use one ML potential model to train another: we use an existing, accurate, but more computationally expensive model to generate reference data (locations and labels) for a series of much faster potentials. Without the need for quantum-mechanical reference computations at the secondary stage, extensive reference datasets can be easily generated, and we find that this improves the quality of fast potentials with less flexible functional forms. We apply the technique to disordered silicon, including a simulation of vitrification and polycrystalline grain formation under pressure with a system size of a million atoms. Our work provides conceptual insight into the machine learning of interatomic potential models, and it suggests a route toward accelerated simulations of condensed-phase systems and nanostructured materials.

cond-mat.mtrl-sci↗

arXiv2021

Cluster Fragments in Amorphous Phosphorus and their Evolution under Pressure

Amorphous phosphorus (a-P) has long attracted interest because of its complex atomic structure, and more recently as an anode material for batteries. However, accurately describing and understanding a-P at the atomistic level remains a challenge. Here we show that large-scale molecular-dynamics simulations, enabled by a machine learning (ML)-based interatomic potential for phosphorus, can give new insights into the atomic structure of a-P and how this structure changes under pressure. The structural model so obtained contains abundant five-membered rings, as well as more complex seven- and eight-atom clusters. Changes in the simulated first sharp diffraction peak during compression and decompression indicate a hysteresis in the recovery of medium-range order. An analysis of cluster fragments, large rings, and voids suggests that moderate pressure (up to about 5 GPa) does not break the connectivity of clusters, but higher pressure does. Our work provides a starting point for further computational studies of the structure and properties of a-P, and more generally it exemplifies how ML-driven modeling can accelerate the understanding of disordered functional materials.

cond-mat.mtrl-sci↗

arXiv2021

Bonding nature and optical contrast of $TiTe_2$/$Sb_2Te_3$ phase-change heterostructure

Chalcogenide phase-change materials (PCMs) are regarded as the leading candidate for storage-class non-volatile memory and neuro-inspired computing. Recently, using the $TiTe_2$/$Sb_2Te_3$ material combination, a new framework - phase-change heterostructure (PCH), has been developed and proved to effectively suppress the noise and drift in electrical resistance upon memory programming, largely reducing the inter-device variability. However, the atomic-scale structural and chemical nature of PCH remains to be fully understood. In this work, we carry out thorough ab initio simulations to assess the bonding characteristics of the PCH. We show that the $TiTe_2$ crystalline nanolayers do not chemically interact with the surrounding $Sb_2Te_3$, and are stabilized by strong covalent and electrostatic Ti-Te interactions, which create a prohibitively high barrier for atomic migrations along the pulsing direction. We also find significant contrast in computed dielectric functions in the PCH, suggesting possible optical applications of this class of devices. With the more confined space and therefore constrained phase transition compared to traditional PCM devices, the recently introduced class of PCH-based devices may lead to improvements in phase-change photonic and optoelectronic applications with much lower stochasticity during programming.

cond-mat.mtrl-sci↗

arXiv2020

Machine learning driven simulated deposition of carbon films: from low-density to diamondlike amorphous carbon

Amorphous carbon (a-C) materials have diverse interesting and useful properties, but the understanding of their atomic-scale structures is still incomplete. Here, we report on extensive atomistic simulations of the deposition and growth of a-C films, describing interatomic interactions using a machine learning (ML) based Gaussian Approximation Potential (GAP) model. We expand widely on our initial work [Phys. Rev. Lett. 120, 166101 (2018)] by now considering a broad range of incident ion energies, thus modeling samples that span the entire range from low-density ($sp^{2}$-rich) to high-density ($sp^{3}$-rich, "diamond-like") amorphous forms of carbon. Two different mechanisms are observed in these simulations, depending on the impact energy: low-energy impacts induce $sp$- and $sp^{2}$-dominated growth directly around the impact site, whereas high-energy impacts induce peening. Furthermore, we propose and apply a scheme for computing the anisotropic elastic properties of the a-C films. Our work provides fundamental insight into this intriguing class of disordered solids, as well as a conceptual and methodological blueprint for simulating the atomic-scale deposition of other materials with ML-driven molecular dynamics.

cond-mat.mtrl-sci↗

arXiv2020

Understanding the Geometric Diversity of Inorganic and Hybrid Frameworks through Structural Coarse-Graining

Much of our understanding of complex structures is based on simplification: for example, metal-organic frameworks are often discussed in the context of "nodes" and "linkers", allowing for a qualitative comparison with simpler inorganic structures. Here we show how such an understanding can be obtained in a systematic and quantitative framework, by combining atom-density based similarity (kernel) functions and unsupervised machine learning with the long-standing idea of "coarse-graining" atomic structure. We demonstrate how the latter enables a comparison of vastly different chemical systems, and use it to create a unified, two-dimensional structure map of experimentally known tetrahedral AB2 networks - including clathrate hydrates, zeolitic imidazolate frameworks (ZIFs), and diverse inorganic phases. The structural relationships that emerge can then be linked to microscopic properties of interest, which we exemplify for structural heterogeneity and tetrahedral density.

cond-mat.mtrl-sci↗

arXiv2020

Combining phonon accuracy with high transferability in Gaussian approximation potential models

Machine learning driven interatomic potentials, including Gaussian approximation potential (GAP) models, are emerging tools for atomistic simulations. Here, we address the methodological question of how one can fit GAP models that accurately predict vibrational properties in specific regions of configuration space, whilst retaining flexibility and transferability to others. We use an adaptive regularization of the GAP fit that scales with the absolute force magnitude on any given atom, thereby exploring the Bayesian interpretation of GAP regularization as an "expected error", and its impact on the prediction of physical properties for a material of interest. The approach enables excellent predictions of phonon modes (to within 0.1-0.2 THz) for structurally diverse silicon allotropes, and it can be coupled with existing fitting databases for high transferability. These findings and workflows are expected to be useful for GAP-driven materials modeling more generally.

cond-mat.mtrl-sci↗

arXiv2019

Structural transitions in dense disordered silicon from quantum-accurate ultra-large-scale simulations

Structurally disordered materials continue to pose fundamental questions, including that of how different disordered phases ("polyamorphs") can coexist and transform from one to another. As a widely studied case, amorphous silicon (a-Si) forms a fourfold-coordinated, covalent random network at ambient conditions, but much higher-coordinated, metallic-like phases under pressure. However, a detailed mechanistic understanding of the liquid-amorphous and amorphous-amorphous transitions in silicon has been lacking, due to intrinsic limitations of even the most advanced experimental and computational techniques. Here, we show how machine-learning (ML)-driven simulations can break through this long-standing barrier, affording a comprehensive, quantum-accurate, and fully atomistic description of all relevant liquid and amorphous phases of silicon. Combining a model system size of 100,000 atoms (ten-nanometre length scale) with a prediction accuracy of a few meV per atom, our simulations reveal a remarkable, three-step transformation sequence for a-Si under increasing external pressure. First, up to 10-11 GPa, polyamorphic low- and high-density amorphous (LDA and HDA) regions are found to coexist, rather than appearing sequentially. Then, we observe a structural collapse into a distinct, very-high-density amorphous (VHDA) phase at 12-13 GPa, reminiscent of the dense liquid but being formed at a much lower temperature. Finally, our simulations indicate the transient nature of this VHDA phase: it rapidly nucleates crystallites at 13-16 GPa, ultimately leading to the formation of a poly-crystalline, simple-hexagonal structure, consistent with experiments but not seen in earlier simulations.

cond-mat.mtrl-sci↗

arXiv2019

Structural and elastic properties of amorphous carbon from simulated quenching at low rates

We generate representative structural models of amorphous carbon (a-C) from constant-volume quenching from the liquid with subsequent relaxation of internal stresses in molecular dynamics simulations using empirical and machine-learning interatomic potentials. By varying volume and quench rate we generate structures with a range of density and amorphous morphologies. We find that all a-C samples show a universal relationship between hybridization, bulk modulus and density despite having distinct cohesive energies. Differences in cohesive energy are traced back to slight changes in the distribution of bond-angles that will likely affect thermal stability of these structures.

cond-mat.mtrl-sci↗

arXiv2019

De novo exploration and self-guided learning of potential-energy surfaces

Interatomic potential models based on machine learning (ML) are rapidly developing as tools for materials simulations. However, because of their flexibility, they require large fitting databases that are normally created with substantial manual selection and tuning of reference configurations. Here, we show that ML potentials can be built in a largely automated fashion, exploring and fitting potential-energy surfaces from the beginning (de novo) within one and the same protocol. The key enabling step is the use of a configuration-averaged kernel metric that allows one to select the few most relevant structures at each step. The resulting potentials are accurate and robust for the wide range of configurations that occur during structure searching, despite only requiring a relatively small number of single-point DFT calculations on small unit cells. We apply the method to materials with diverse chemical nature and coordination environments, marking a milestone toward the more routine application of ML potentials in physics, chemistry, and materials science.

cond-mat.mtrl-sci↗

arXiv2018

Quantifying Chemical Structure and Atomic Energies in Amorphous Silicon Networks

Amorphous materials are coming within reach of realistic computer simulations, but new approaches are needed to fully understand their intricate atomic structures. Here, we show how machine-learning (ML)-based techniques can give new, quantitative chemical insight into the atomic-scale structure of amorphous silicon (a-Si). Based on a similarity function ("kernel"), we define a structural metric that unifies the description of nearest- and next-nearest-neighbor environments in the amorphous state. We apply this to an ensemble of a-Si networks, generated in melt-quench simulations with an ML-based interatomic potential, in which we tailor the degree of ordering by varying the quench rates down to $10^{10}$ K/s (leading to a structural model that is lower in energy than the established WWW network). We then show how "machine-learned" atomic energies permit a chemical interpretation, associating coordination defects in a-Si with distinct energetic stability regions. The approach is straightforward and inexpensive to apply to arbitrary structural models, and it is therefore expected to have more general significance for developing a quantitative understanding of the amorphous state.

cond-mat.mtrl-sci↗

arXiv2018

Growth Mechanism and Origin of High $sp^3$ Content in Tetrahedral Amorphous Carbon

We study the deposition of tetrahedral amorphous carbon (ta-C) films from molecular dynamics simulations based on a machine-learned interatomic potential trained from density-functional theory data. For the first time, the high $sp^3$ fractions in excess of 85% observed experimentally are reproduced by means of computational simulation, and the deposition energy dependence of the film's characteristics is also accurately described. High confidence in the potential and direct access to the atomic interactions allow us to infer the microscopic growth mechanism in this material. While the widespread view is that ta-C grows by "subplantation," we show that the so-called "peening" model is actually the dominant mechanism responsible for the high $sp^3$ content. We show that pressure waves lead to bond rearrangement away from the impact site of the incident ion, and high $sp^3$ fractions arise from a delicate balance of transitions between three- and fourfold coordinated carbon atoms. These results open the door for a microscopic understanding of carbon nanostructure formation with an unprecedented level of predictive power.

cond-mat.mtrl-sci↗