arXiv subjects

W. Christopher Strickland

Publications and source records attributed to W. Christopher Strickland.

6 recordsLinked to original sources

arXiv2026

A weighted model of perception and decision-making between targets of finite size

Recent research grounded in experiments has connected neural ring models of vision to how animals navigate a complex landscape of attractive targets. In this paper we investigate the mathematical and biological implications of a three-stage model where animals pre-process visual stimuli to identify a discrete set of targets, process this input to select the dominant targets, and then post-process this information to navigate the landscape. Incorporating finite target sizes and a neural density allows consistent target acquisition and pursuit reflecting what is seen in nature. Mathematically, we show this model corresponds to an energy minimization problem, simplifying both its analysis and numerical implementation. Biologically, we argue that the model is physiologically motivated, reproduces experimental observations, and presents a fairly direct pathway to decoding neural geometry via empirical data. Our results also demonstrate an analysis pipeline for future model extensions and suggest specific avenues for experimental research to test and parameterize our quantitative framework.

q-bio.NC↗

arXiv2022

Agent-based Dynamics of a SPAHR Opioid Model on Social Network Structures

Addiction epidemiology has been an active area of mathematical research in recent years. However, the social and mental processes involved in substance use disorders versus contraction of a pathogenic disease have presented challenges to advancing the epidemiological theory of substance abuse, especially within the context of the opioids where both prescriptions and social contagion have played a major role. In this paper, we utilize an agent-based modeling approach on social networks to further explore these dynamics. Using parameter estimation approaches, we compare our results to that of the Phillips et al. SPAHR model which was previously fit to data from the state of Tennessee. Our results show that the average path length of a social network has a strong relationship to social contagion dynamics for drug use initiation, while other pathways to substance use disorder should not be constrained to social network interactions that predate the individual's drug use.

physics.soc-ph↗

arXiv2020

Agent-based and continuous models of hopper bands for the Australian plague locust: How resource consumption mediates pulse formation and geometry

Locusts are significant agricultural pests. Under favorable environmental conditions flightless juveniles may aggregate into coherent, aligned swarms referred to as hopper bands. These bands are often observed as a propagating wave having a dense front with rapidly decreasing density in the wake. A tantalizing and common observation is that these fronts slow and steepen in the presence of green vegetation. This suggests the collective motion of the band is mediated by resource consumption. Our goal is to model and quantify this effect. We focus on the Australian plague locust, for which excellent field and experimental data is available. Exploiting the alignment of locusts in hopper bands, we concentrate solely on the density variation perpendicular to the front. We develop two models in tandem; an agent-based model that tracks the position of individuals and a partial differential equation model that describes locust density. In both these models, locust are either stationary (and feeding) or moving. Resources decrease with feeding. The rate at which locusts transition between moving and stationary (and vice versa) is enhanced (diminished) by resource abundance. This effect proves essential to the formation, shape, and speed of locust hopper bands in our models. From the biological literature we estimate ranges for the ten input parameters of our models. Sobol sensitivity analysis yields insight into how the band's collective characteristics vary with changes in the input parameters. By examining 4.4 million parameter combinations, we identify biologically consistent parameters that reproduce field observations. We thus demonstrate that resource-dependent behavior can explain the density distribution observed in locust hopper bands. This work suggests that feeding behaviors should be an intrinsic part of future modeling efforts.

nlin.AO↗

arXiv2018

Modeling the prescription opioid epidemic

Opioid addiction has become a global epidemic and a national health crisis in recent years, with the number of opioid overdose fatalities steadily increasing since the 1990s. In contrast to the dynamics of a typical illicit drug or disease epidemic, opioid addiction has its roots in legal, prescription medication - a fact which greatly increases the exposed population and provides additional drug accessibility for addicts. In this paper, we present a mathematical model for prescription drug addiction and treatment with parameters and validation based on data from the opioid epidemic. Key dynamics considered include addiction through prescription, addiction from illicit sources, and treatment. Through mathematical analysis, we show that no addiction-free equilibrium can exist without stringent control over how opioids are administered and prescribed, effectively transforming the dynamics of the opioid epidemic into those found in a purely illicit drug model. Numerical sensitivity analysis suggests that relatively low states of endemic addiction can be obtained by primarily focusing on medical prevention followed by aggressive treatment of remaining cases - even when the probability of relapse from treatment remains high. Further empirical study focused on understanding the rate of illicit drug dependence versus overdose risk, along with the current and changing rates of opioid prescription and treatment, would shed significant light on optimal control efforts and feasible outcomes for this epidemic and drug epidemics in general.

q-bio.PE↗

arXiv2017

Three-dimensional low Reynolds number flows near biological filtering and protective layers

Mesoscale filtering and protective layers are replete throughout the natural world. Within the body, arrays of extracellular proteins, microvilli, and cilia can act as both protective layers and mechanosensors. For example, blood flow profiles through the endothelial surface layer determine the amount of shear stress felt by the endothelial cells and may alter the rates at which molecules enter and exit the cells. Characterizing the flow profiles through such layers is therefore critical towards understanding the function of such arrays in cell signaling and molecular filtering. External filtering layers are also important to many animals and plants. Trichomes (the hairs or fine outgrowths on plants) can drastically alter both the average wind speed and profile near the leaf's surface, affecting the rates of nutrient and heat exchange. In this paper, dynamically scaled physical models are used to study the flow profiles outside of arrays of cylinders that represent such filtering and protective layers. In addition, numerical simulations using the Immersed Boundary Method are used to resolve the 3D flows within the layers. The experimental and computational results are compared to analytical results obtained by modeling the layer as a homogeneous porous medium with free flow above the layer. The experimental results show that the bulk flow is well described by simple analytical models. The numerical results show that the spatially averaged flow within the layer is well described by the Brinkman model. The numerical results also demonstrate that the flow can be highly 3D with fluid moving into and out of the layer. These effects are not described by the Brinkman model and may be significant for biologically relevant volume fractions. The results of this paper can be used to understand how variations in density and height of such structures can alter shear stresses and bulk flows.

physics.flu-dyn↗

arXiv2016

IB2d: a Python and MATLAB implementation of the immersed boundary method

The development of fluid-structure interaction (FSI) software involves trade-offs between ease of use, generality, performance, and cost. Typically there are large learning curves when using low-level software to model the interaction of an elastic structure immersed in a uniform density fluid. Many existing codes are not publicly available, and the commercial software that exists usually requires expensive licenses and may not be as robust or allow the necessary flexibility that in house codes can provide. We present an open source immersed boundary software package, IB2d, with full implementations in both MATLAB and Python, that is capable of running a vast range of biomechanics models and is accessible to scientists who have experience in high-level programming environments. IB2d contains multiple options for constructing material properties of the fiber structure, as well as the advection-diffusion of a chemical gradient, muscle mechanics models, and artificial forcing to drive boundaries with a preferred motion.

physics.flu-dyn↗