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Wei Sun

Publications and source records attributed to Wei Sun.

At least 253 records · Page 14Linked to original sources

Generating Explanations in Medical Question-Answering by Expectation Maximization Inference over Evidence

Medical Question Answering~(medical QA) systems play an essential role in assisting healthcare workers in finding answers to their questions. However, it is not sufficient to merely provide answers by medical QA systems because users might want explanations, that is, more analytic statements in natural language that describe the elements and context that support the answer. To do so, we propose a novel approach for generating natural language explanations for answers predicted by medical QA systems. As high-quality medical explanations require additional medical knowledge, so that our system extract knowledge from medical textbooks to enhance the quality of explanations during the explanation generation process. Concretely, we designed an expectation-maximization approach that makes inferences about the evidence found in these texts, offering an efficient way to focus attention on lengthy evidence passages. Experimental results, conducted on two datasets MQAE-diag and MQAE, demonstrate the effectiveness of our framework for reasoning with textual evidence. Our approach outperforms state-of-the-art models, achieving a significant improvement of \textbf{6.86} and \textbf{9.43} percentage points on the Rouge-1 score; \textbf{8.23} and \textbf{7.82} percentage points on the Bleu-4 score on the respective datasets.

cs.CL↗

Efficient N:M Sparse DNN Training Using Algorithm, Architecture, and Dataflow Co-Design

Sparse training is one of the promising techniques to reduce the computational cost of DNNs while retaining high accuracy. In particular, N:M fine-grained structured sparsity, where only N out of consecutive M elements can be nonzero, has attracted attention due to its hardware-friendly pattern and capability of achieving a high sparse ratio. However, the potential to accelerate N:M sparse DNN training has not been fully exploited, and there is a lack of efficient hardware supporting N:M sparse training. To tackle these challenges, this paper presents a computation-efficient training scheme for N:M sparse DNNs using algorithm, architecture, and dataflow co-design. At the algorithm level, a bidirectional weight pruning method, dubbed BDWP, is proposed to leverage the N:M sparsity of weights during both forward and backward passes of DNN training, which can significantly reduce the computational cost while maintaining model accuracy. At the architecture level, a sparse accelerator for DNN training, namely SAT, is developed to neatly support both the regular dense operations and the computation-efficient N:M sparse operations. At the dataflow level, multiple optimization methods ranging from interleave mapping, pre-generation of N:M sparse weights, and offline scheduling, are proposed to boost the computational efficiency of SAT. Finally, the effectiveness of our training scheme is evaluated on a Xilinx VCU1525 FPGA card using various DNN models and datasets. Experimental results show the SAT accelerator with the BDWP sparse training method under 2:8 sparse ratio achieves an average speedup of 1.75x over that with the dense training, accompanied by a negligible accuracy loss of 0.56% on average. Furthermore, our proposed training scheme significantly improves the training throughput by 2.97~25.22x and the energy efficiency by 1.36~3.58x over prior FPGA-based accelerators.

cs.LG↗

Radiative transition decay width of $ψ_2(3823)\rightarrowγχ_{c1}$ from lattice QCD

We present an exploratory $N_f=2$ lattice QCD study of $ψ_2(3823)\to γχ_{c1}$ at a pion mass $m_π\approx 350$~MeV. The related two-point and three-piont functions are calculated using the distillation method. The electromagnetic multipole form factor $\hat{V}(0)=2.083(11)$ for $J/ψ\toγη_c$ is consistent with previous lattice results, the form factors $\hat{E}_1(0)$, $\hat{M}_2(0)$ and $\hat{E}_3(0)$ for $Γ(χ_{c2}\toγJ/ψ)$ have the same hierarchy as that derived from experiments and the predicted decay width $Γ(χ_{c2}\toγJ/ψ)=368(5)~\text{keV}$ is in excellent agreement with the PDG value $374(10)~\text{keV}$ and previous lattice QCD results in the quenched approximation. The same strategy is applied to the study of the process $ψ_2(3823)\to γχ_{c1}$ and the partial decay width is predicted to be $337(27)~\text{keV}$. According to the BESIII constraints on the $ψ_2(3823)$ decay channels and some phenomenological results, we estimate the total width $Γ(ψ_2(3823))=520(100)~\text{keV}$.

hep-lat↗

Content Reduction, Surprisal and Information Density Estimation for Long Documents

Many computational linguistic methods have been proposed to study the information content of languages. We consider two interesting research questions: 1) how is information distributed over long documents, and 2) how does content reduction, such as token selection and text summarization, affect the information density in long documents. We present four criteria for information density estimation for long documents, including surprisal, entropy, uniform information density, and lexical density. Among those criteria, the first three adopt the measures from information theory. We propose an attention-based word selection method for clinical notes and study machine summarization for multiple-domain documents. Our findings reveal the systematic difference in information density of long text in various domains. Empirical results on automated medical coding from long clinical notes show the effectiveness of the attention-based word selection method.

cs.CL↗

Data Commons

Publicly available data from open sources (e.g., United States Census Bureau (Census), World Health Organization (WHO), Intergovernmental Panel on Climate Change (IPCC)) are vital resources for policy makers, students and researchers across different disciplines. Combining data from different sources requires the user to reconcile the differences in schemas, formats, assumptions, and more. This data wrangling is time consuming, tedious and needs to be repeated by every user of the data. Our goal with Data Commons (DC) is to help make public data accessible and useful to those who want to understand this data and use it to solve societal challenges and opportunities. We do the data processing and make the processed data widely available via standard schemas and Cloud APIs. Data Commons is a distributed network of sites that publish data in a common schema and interoperate using the Data Commons APIs. Data from different Data Commons can be joined easily. The aggregate of these Data Commons can be viewed as a single Knowledge Graph. This Knowledge Graph can then be searched over using Natural Language questions utilizing advances in Large Language Models. This paper describes the architecture of Data Commons, some of the major deployments and highlights directions for future work.

cs.CY↗

Programmable access to microresonator solitons with modulational sideband heating

Dissipative Kerr solitons formed in high-$Q$ optical microresonators provide a route to miniaturized optical frequency combs that can revolutionize precision measurements, spectroscopy, sensing, and communication. In the last decade, a myriad of integrated material platforms have been extensively studied and developed to create photonic-chip-based soliton combs. However, the photo-thermal effect in integrated optical microresonators has been a major issue preventing simple and reliable soliton generation. Several sophisticated techniques to circumvent the photo-thermal effect have been developed. In addition, instead of the single-soliton state, emerging applications in microwave photonics and frequency metrology prefer multi-soliton states. Here we demonstrate an approach to manage the photo-thermal effect and facilitate soliton generation. The approach is based on a single phase-modulated pump, where the generated blue-detuned sideband synergizes with the carrier and thermally stabilizes the microresonator. We apply this technique and demonstrate deterministic soliton generation of 19.97 GHz repetition rate in an integrated silicon nitride microresonator. Furthermore, we develop a program to automatically address to target $N-$soliton state, in addition to the single-soliton state, with near 100% success rate and as short as 10 s time consumption. Our method is valuable for soliton generation in essentially any platforms even with strong photo-thermal effect, and can promote wider applications of soliton frequency comb systems for microwave photonics, telecommunication and frequency metrology.

physics.optics↗

Frequency-comb-linearized, widely tunable lasers for coherent ranging

Tunable lasers, with the ability to continuously adjust their emission wavelengths, have found widespread applications across various fields such as biomedical imaging, coherent ranging, optical communications and spectroscopy. In these applications, a wide chirp range is advantageous for large spectral coverage and high frequency resolution. Besides, the frequency accuracy and precision also depend critically on the chirp linearity of the laser. While extensive efforts have been made on the development of many kinds of frequency-agile, widely tunable, narrow-linewidth lasers, wideband yet precise methods to characterize and to linearize laser chirp dynamics are also demanded. Here we present an approach to characterize laser chirp dynamics using an optical frequency comb. The instantaneous laser frequency is tracked over terahertz bandwidth with 1 MHz interval. Using this approach we calibrate the chirp performance of twelve tunable lasers from Toptica, Santec, New Focus, EXFO and NKT that are commonly used in fiber optics and integrated photonics. In addition, with acquired knowledge on laser chirp dynamics, we demonstrate a simple frequency-linearization scheme that enables coherent ranging without any optical or electronic linearization units. Our approach not only presents a novel wideband, high-resolution laser spectroscopy, but is also critical for sensing applications with ever-increasing requirements on performance.

physics.optics↗

DDH-QA: A Dynamic Digital Humans Quality Assessment Database

In recent years, large amounts of effort have been put into pushing forward the real-world application of dynamic digital human (DDH). However, most current quality assessment research focuses on evaluating static 3D models and usually ignores motion distortions. Therefore, in this paper, we construct a large-scale dynamic digital human quality assessment (DDH-QA) database with diverse motion content as well as multiple distortions to comprehensively study the perceptual quality of DDHs. Both model-based distortion (noise, compression) and motion-based distortion (binding error, motion unnaturalness) are taken into consideration. Ten types of common motion are employed to drive the DDHs and a total of 800 DDHs are generated in the end. Afterward, we render the video sequences of the distorted DDHs as the evaluation media and carry out a well-controlled subjective experiment. Then a benchmark experiment is conducted with the state-of-the-art video quality assessment (VQA) methods and the experimental results show that existing VQA methods are limited in assessing the perceptual loss of DDHs.

cs.CV↗

EEP-3DQA: Efficient and Effective Projection-based 3D Model Quality Assessment

Currently, great numbers of efforts have been put into improving the effectiveness of 3D model quality assessment (3DQA) methods. However, little attention has been paid to the computational costs and inference time, which is also important for practical applications. Unlike 2D media, 3D models are represented by more complicated and irregular digital formats, such as point cloud and mesh. Thus it is normally difficult to perform an efficient module to extract quality-aware features of 3D models. In this paper, we address this problem from the aspect of projection-based 3DQA and develop a no-reference (NR) \underline{E}fficient and \underline{E}ffective \underline{P}rojection-based \underline{3D} Model \underline{Q}uality \underline{A}ssessment (\textbf{EEP-3DQA}) method. The input projection images of EEP-3DQA are randomly sampled from the six perpendicular viewpoints of the 3D model and are further spatially downsampled by the grid-mini patch sampling strategy. Further, the lightweight Swin-Transformer tiny is utilized as the backbone to extract the quality-aware features. Finally, the proposed EEP-3DQA and EEP-3DQA-t (tiny version) achieve the best performance than the existing state-of-the-art NR-3DQA methods and even outperforms most full-reference (FR) 3DQA methods on the point cloud and mesh quality assessment databases while consuming less inference time than the compared 3DQA methods.

cs.CV↗

Joint Gaze-Location and Gaze-Object Detection

This paper proposes an efficient and effective method for joint gaze location detection (GL-D) and gaze object detection (GO-D), \emph{i.e.}, gaze following detection. Current approaches frame GL-D and GO-D as two separate tasks, employing a multi-stage framework where human head crops must first be detected and then be fed into a subsequent GL-D sub-network, which is further followed by an additional object detector for GO-D. In contrast, we reframe the gaze following detection task as detecting human head locations and their gaze followings simultaneously, aiming at jointly detect human gaze location and gaze object in a unified and single-stage pipeline. To this end, we propose GTR, short for \underline{G}aze following detection \underline{TR}ansformer, streamlining the gaze following detection pipeline by eliminating all additional components, leading to the first unified paradigm that unites GL-D and GO-D in a fully end-to-end manner. GTR enables an iterative interaction between holistic semantics and human head features through a hierarchical structure, inferring the relations of salient objects and human gaze from the global image context and resulting in an impressive accuracy. Concretely, GTR achieves a 12.1 mAP gain ($\mathbf{25.1}\%$) on GazeFollowing and a 18.2 mAP gain ($\mathbf{43.3\%}$) on VideoAttentionTarget for GL-D, as well as a 19 mAP improvement ($\mathbf{45.2\%}$) on GOO-Real for GO-D. Meanwhile, unlike existing systems detecting gaze following sequentially due to the need for a human head as input, GTR has the flexibility to comprehend any number of people's gaze followings simultaneously, resulting in high efficiency. Specifically, GTR introduces over a $\times 9$ improvement in FPS and the relative gap becomes more pronounced as the human number grows.

cs.CV↗

Deformed relativistic Hartree-Bogoliubov theory in continuum with a point-coupling functional. II. Examples of odd Nd isotopes

The aim of this work is to extend the deformed relativistic Hartree-Bogoliubov theory in continuum (DRHBc) based on the point-coupling density functionals to odd-$A$ and odd-odd nuclei and examine its applicability by taking odd-$A$ Nd isotopes as examples. In the DRHBc theory, the densities and potentials with axial deformation are expanded in terms of Legendre polynomials, and the relativistic Hartree-Bogoliubov equations are solved in a Dirac Woods-Saxon basis to include the continuum effects. For an odd-$A$ or odd-odd nucleus, the blocking effect of unpaired nucleon(s) is taken into account with the equal filling approximation. To determine its ground state, an automatic blocking procedure is adopted, in which the orbital with the lowest quasiparticle energy is blocked during the iteration. This procedure is justified by comparing with the results from the orbital-fixed blocking calculations, in which the blocked orbital near the Fermi surface is fixed during the iteration. The ground states for both light and heavy nuclei can be provided by the automatic blocking procedure as the orbital-fixed blocking procedure, but with considerably reduced computational cost. The numerical details for even-even nuclei are found to be valid for odd-$A$ and odd-odd nuclei as well. Taking Nd isotopes including both even-even and odd-$A$ ones as examples, the calculated ground-state properties with PC-PK1 are in good agreement with the available experimental data. This work paves the way to construct the DRHBc mass table including all even-even, odd-$A$ and odd-odd nuclei in the nuclear chart.

nucl-th↗

Agglomerative Transformer for Human-Object Interaction Detection

We propose an agglomerative Transformer (AGER) that enables Transformer-based human-object interaction (HOI) detectors to flexibly exploit extra instance-level cues in a single-stage and end-to-end manner for the first time. AGER acquires instance tokens by dynamically clustering patch tokens and aligning cluster centers to instances with textual guidance, thus enjoying two benefits: 1) Integrality: each instance token is encouraged to contain all discriminative feature regions of an instance, which demonstrates a significant improvement in the extraction of different instance-level cues and subsequently leads to a new state-of-the-art performance of HOI detection with 36.75 mAP on HICO-Det. 2) Efficiency: the dynamical clustering mechanism allows AGER to generate instance tokens jointly with the feature learning of the Transformer encoder, eliminating the need of an additional object detector or instance decoder in prior methods, thus allowing the extraction of desirable extra cues for HOI detection in a single-stage and end-to-end pipeline. Concretely, AGER reduces GFLOPs by 8.5% and improves FPS by 36%, even compared to a vanilla DETR-like pipeline without extra cue extraction.

cs.CV↗

NTIRE 2023 Quality Assessment of Video Enhancement Challenge

This paper reports on the NTIRE 2023 Quality Assessment of Video Enhancement Challenge, which will be held in conjunction with the New Trends in Image Restoration and Enhancement Workshop (NTIRE) at CVPR 2023. This challenge is to address a major challenge in the field of video processing, namely, video quality assessment (VQA) for enhanced videos. The challenge uses the VQA Dataset for Perceptual Video Enhancement (VDPVE), which has a total of 1211 enhanced videos, including 600 videos with color, brightness, and contrast enhancements, 310 videos with deblurring, and 301 deshaked videos. The challenge has a total of 167 registered participants. 61 participating teams submitted their prediction results during the development phase, with a total of 3168 submissions. A total of 176 submissions were submitted by 37 participating teams during the final testing phase. Finally, 19 participating teams submitted their models and fact sheets, and detailed the methods they used. Some methods have achieved better results than baseline methods, and the winning methods have demonstrated superior prediction performance.

cs.CV↗

Advancing Zero-Shot Digital Human Quality Assessment through Text-Prompted Evaluation

Digital humans have witnessed extensive applications in various domains, necessitating related quality assessment studies. However, there is a lack of comprehensive digital human quality assessment (DHQA) databases. To address this gap, we propose SJTU-H3D, a subjective quality assessment database specifically designed for full-body digital humans. It comprises 40 high-quality reference digital humans and 1,120 labeled distorted counterparts generated with seven types of distortions. The SJTU-H3D database can serve as a benchmark for DHQA research, allowing evaluation and refinement of processing algorithms. Further, we propose a zero-shot DHQA approach that focuses on no-reference (NR) scenarios to ensure generalization capabilities while mitigating database bias. Our method leverages semantic and distortion features extracted from projections, as well as geometry features derived from the mesh structure of digital humans. Specifically, we employ the Contrastive Language-Image Pre-training (CLIP) model to measure semantic affinity and incorporate the Naturalness Image Quality Evaluator (NIQE) model to capture low-level distortion information. Additionally, we utilize dihedral angles as geometry descriptors to extract mesh features. By aggregating these measures, we introduce the Digital Human Quality Index (DHQI), which demonstrates significant improvements in zero-shot performance. The DHQI can also serve as a robust baseline for DHQA tasks, facilitating advancements in the field. The database and the code are available at https://github.com/zzc-1998/SJTU-H3D.

eess.IV↗

Dynamical Stability of Polar Circumbinary Orbits and Planet-Formation in Planetary Disc of 99 Herculis

A possible polar-ring debris disc, the dynamics of which can be described by the outer hierarchical restricted three-body problem, has been detected in 99 Herculis. An empirical formula on the minimum radius beyond which test particles in polar orbits can keep stable within ${10^7}$ binary periods is provided through the numerical fitting, applying to the binary eccentricity $e_{1} \in \left[ {0,0.8} \right)$ and the mass ratio of binary $ λ\in \left[ {0.1,1} \right]$, where $ λ= m_0/m_1$ (${m_0}$ and ${m_1}$ represent the masses of the two binary stars). The polar planetary disc has the lowerest statistical accretion efficiency and moderate impact frequency of collisions among planetesimals (with a radius of 1-10km) compared to that in the circumbinary coplanar disc and the standard disc around the single host star. Colliding timescales in the circumbinary disk (both polar and coplanar configuration) are longer than $10^7$ yr exceeding the dissipation timescales of the gas disc. The stochastic simulations show that successive collisions cannot make planetesimal grow up which may explain the formation of the debris disc observed in 99 Herculis.

astro-ph.EP↗

Incorporating increased variability in testing for cancer DNA methylation

Cancer development is associated with aberrant DNA methylation, including increased stochastic variability. Statistical tests for discovering cancer methylation biomarkers have focused on changes in mean methylation. To improve the power of detection, we propose to incorporate increased variability in testing for cancer differential methylation by two joint constrained tests: one for differential mean and increased variance, the other for increased mean and increased variance. To improve small sample properties, likelihood ratio statistics are developed, accounting for the variability in estimating the sample medians in the Levene test. Efficient algorithms were developed and implemented in DMVC function of R package DMtest. The proposed joint constrained tests were compared to standard tests and partial area under the curve (pAUC) for the receiver operating characteristic curve (ROC) in simulated datasets under diverse models. Application to the high-throughput methylome data in The Cancer Genome Atlas (TCGA) shows substantially increased yield of candidate CpG markers.

stat.ME↗

DMseg: a Python algorithm for de novo detection of differentially or variably methylated regions

Detecting and assessing statistical significance of differentially methylated regions (DMRs) is a fundamental task in methylome association studies. While the average differential methylation in different phenotype groups has been the inferential focus, methylation changes in chromosomal regions may also present as differential variability, i.e., variably methylated regions (VMRs). Testing statistical significance of regional differential methylation is a challenging problem, and existing algorithms do not provide accurate type I error control for genome-wide DMR or VMR analysis. No algorithm has been publicly available for detecting VMRs. We propose DMseg, a Python algorithm with efficient DMR/VMR detection and significance assessment for array-based methylome data, and compare its performance to Bumphunter, a popular existing algorithm. Operationally, DMseg searches for DMRs or VMRs within CpG clusters that are adaptively determined by both gap distance and correlation between contiguous CpG sites in a microarray. Levene test was implemented for assessing differential variability of individual CpGs. A likelihood ratio statistic is proposed to test for a constant difference within CpGs in a DMR or VMR to summarize the evidence of regional difference. Using a stratified permutation scheme and pooling null distributions of LRTs from clusters with similar numbers of CpGs, DMseg provides accurate control of the type I error rate. In simulation experiments, DMseg shows superior power than Bumphunter to detect DMRs. Application to methylome data of Barrett's esophagus and esophageal adenocarcinoma reveals a number of DMRs and VMRs of biological interest.

stat.ME↗

First Place Solution to the CVPR'2023 AQTC Challenge: A Function-Interaction Centric Approach with Spatiotemporal Visual-Language Alignment

Affordance-Centric Question-driven Task Completion (AQTC) has been proposed to acquire knowledge from videos to furnish users with comprehensive and systematic instructions. However, existing methods have hitherto neglected the necessity of aligning spatiotemporal visual and linguistic signals, as well as the crucial interactional information between humans and objects. To tackle these limitations, we propose to combine large-scale pre-trained vision-language and video-language models, which serve to contribute stable and reliable multimodal data and facilitate effective spatiotemporal visual-textual alignment. Additionally, a novel hand-object-interaction (HOI) aggregation module is proposed which aids in capturing human-object interaction information, thereby further augmenting the capacity to understand the presented scenario. Our method achieved first place in the CVPR'2023 AQTC Challenge, with a Recall@1 score of 78.7\%. The code is available at https://github.com/tomchen-ctj/CVPR23-LOVEU-AQTC.

cs.CV↗