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Wen Ye

Publications and source records attributed to Wen Ye.

23 records · Page 2Linked to original sources

TEMPO: Prompt-based Generative Pre-trained Transformer for Time Series Forecasting

The past decade has witnessed significant advances in time series modeling with deep learning. While achieving state-of-the-art results, the best-performing architectures vary highly across applications and domains. Meanwhile, for natural language processing, the Generative Pre-trained Transformer (GPT) has demonstrated impressive performance via training one general-purpose model across various textual datasets. It is intriguing to explore whether GPT-type architectures can be effective for time series, capturing the intrinsic dynamic attributes and leading to significant accuracy improvements. In this paper, we propose a novel framework, TEMPO, that can effectively learn time series representations. We focus on utilizing two essential inductive biases of the time series task for pre-trained models: (i) decomposition of the complex interaction between trend, seasonal and residual components; and (ii) introducing the design of prompts to facilitate distribution adaptation in different types of time series. TEMPO expands the capability for dynamically modeling real-world temporal phenomena from data within diverse domains. Our experiments demonstrate the superior performance of TEMPO over state-of-the-art methods on zero shot setting for a number of time series benchmark datasets. This performance gain is observed not only in scenarios involving previously unseen datasets but also in scenarios with multi-modal inputs. This compelling finding highlights TEMPO's potential to constitute a foundational model-building framework.

cs.LG↗

Incorporating External Risk Information with the Cox Model under Population Heterogeneity: Applications to Trans-Ancestry Polygenic Hazard Scores

Polygenic hazard score (PHS) models designed for European ancestry (EUR) individuals provide ample information regarding survival risk discrimination. Incorporating such information can improve the performance of risk discrimination in an internal small-sized non-EUR cohort. However, given that external EUR-based model and internal individual-level data come from different populations, ignoring population heterogeneity can introduce substantial bias. In this paper, we develop a Kullback-Leibler-based Cox model (CoxKL) to integrate internal individual-level time-to-event data with external risk scores derived from published prediction models, accounting for population heterogeneity. Partial-likelihood-based KL information is utilized to measure the discrepancy between the external risk information and the internal data. We establish the asymptotic properties of the CoxKL estimator. Simulation studies show that the integration model by the proposed CoxKL method achieves improved estimation efficiency and prediction accuracy. We applied the proposed method to develop a trans-ancestry PHS model for prostate cancer and found that integrating a previously published EUR-based PHS with an internal genotype data of African ancestry (AFR) males yielded considerable improvement on the prostate cancer risk discrimination.

stat.ME↗

Region2Vec: Community Detection on Spatial Networks Using Graph Embedding with Node Attributes and Spatial Interactions

Community Detection algorithms are used to detect densely connected components in complex networks and reveal underlying relationships among components. As a special type of networks, spatial networks are usually generated by the connections among geographic regions. Identifying the spatial network communities can help reveal the spatial interaction patterns, understand the hidden regional structures and support regional development decision-making. Given the recent development of Graph Convolutional Networks (GCN) and its powerful performance in identifying multi-scale spatial interactions, we proposed an unsupervised GCN-based community detection method "region2vec" on spatial networks. Our method first generates node embeddings for regions that share common attributes and have intense spatial interactions, and then applies clustering algorithms to detect communities based on their embedding similarity and spatial adjacency. Experimental results show that while existing methods trade off either attribute similarities or spatial interactions for one another, "region2vec" maintains a great balance between both and performs the best when one wants to maximize both attribute similarities and spatial interactions within communities.

cs.SI↗

Kullback-Leibler-Based Discrete Failure Time Models for Integration of Published Prediction Models with New Time-To-Event Dataset

Prediction of time-to-event data often suffers from rare event rates, small sample sizes, high dimensionality and low signal-to-noise ratios. Incorporating published prediction models from large-scale studies is expected to improve the performance of prognosis prediction on internal individual-level time-to-event data. However, existing integration approaches typically assume that underlying distributions from the external and internal data sources are similar, which is often invalid. To account for challenges including heterogeneity, data sharing, and privacy constraints, we propose a discrete failure time modeling procedure, which utilizes a discrete hazard-based Kullback-Leibler discriminatory information measuring the discrepancy between the published models and the internal dataset. Simulations show the advantage of the proposed method compared with those solely based on the internal data or published models. We apply the proposed method to improve prediction performance on a kidney transplant dataset from a local hospital by integrating this small-scale dataset with published survival models obtained from the national transplant registry.

stat.ME↗

A measurement method of transverse light-shift in atomic spin co-magnetometer

We disclose a method to obtain the transverse light-shift along the probe light of a single-axis alkali metal-noble gas co-magnetometer. The relationship between transverse compensating field and light-shift is deduced through the steady-state solution of Bloch equations. The variety of probe light intensity is used to obtain the residual magnetic field, and step modulation tests are applied to acquire the total spin-relaxation rate of electron spins and self-compensation point. Finally, the transverse light-shift is reduced from -0.115 nT to -0.039 nT by optimizing the probe light wavelength, and the value of the calibration coefficient can be increased simultaneously.

physics.app-ph↗