arXiv subjects

Wenqi Huang

Publications and source records attributed to Wenqi Huang.

At least 19 recordsLinked to original sources

arXiv2026

Primitive Representation Learning for Unsupervised Dynamic Contrast Enhanced MRI Reconstruction

Reliable quantitative analysis of dynamic contrast-enhanced MRI requires high-quality spatiotemporal reconstructions at high undersampling rates. Scan-specific reconstructions using Gaussian and Gabor primitives have shown promising results without the need for large training datasets, but have not addressed the additional dimension of dynamic contrast. We propose a multi-dimensional, primitive based framework for dynamic contrast-enhanced MRI reconstruction that disentangles the underlying anatomy, the dynamic contrast enhancement, and residual motion into separate temporal basis functions, thereby enabling a geometrical interpretation of the representation. We show that this architecture achieves performance competitive with conventional reconstruction methods, both in reconstruction quality and in the accuracy of extracted aorta and kidney enhancement curves. The modular tier design extends naturally to additional dynamic factors and higher acceleration rates. Code available at https://github.com/compai-lab/2026-GaborDCE-spieker.

eess.IV↗

arXiv2026

Implicit representations are dead. Long live explicit primitives!

Continuous parameterization of medical data has emerged as a powerful paradigm for resolution-independent image representation. While Implicit Neural Representations offer high fidelity and compact storage, their reliance on global Multi-Layer Perceptrons incurs sizeable computational costs, large memory requirements, and extensive optimization times. As medical imaging trends towards ever-more detailed, high-resolution volumes, these costs impose significant bottlenecks in the applicability of implicit approaches. Recently, explicit Gaussian-based primitives have revolutionized the representation learning paradigm by trading deep network evaluations for localized, rasterization-friendly primitives. In this paper, we present a comprehensive, cross-dimensional evaluation of Gaussian representations against implicit approaches for medical imaging applications. First, we outline a theoretical overview on the mathematical properties offered by explicit primitives beyond what is capable under the implicit neural paradigm. Subsequently, we benchmark the computational performance on two demanding image datasets: 2D microscopy histology and 3D lung Computed Tomography (CT). Our experiments demonstrate that Gaussian representations consistently match or surpass reconstruction metrics compared to implicit methods across all compression factors, while displaying significantly lower optimization times, and memory requirements. Together with the compelling mathematical properties offered by explicit primitives, these findings motivate the wider adoption of Gaussian representations and position them as an attractive direction for future research in medical imaging.

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arXiv2026

DeepSWE: Measuring Frontier Coding Agents on Original, Long-Horizon Engineering Tasks

DeepSWE is a benchmark of 113 original, long-horizon software engineering tasks for evaluating coding agents. Most public agentic coding benchmarks follow SWE-bench in mining merged fixes from public GitHub repositories, which creates two problems: the fixes and their discussion were likely seen during pretraining, so a high score can reflect recall rather than problem-solving; and each task is graded by the tests that shipped with its merged fix, which were written to confirm one specific fix rather than grade an arbitrary solution, so they can fail a correct alternative or pass an incomplete one. DeepSWE avoids both. Its tasks are written from scratch across 91 active open-source repositories and five languages and are never contributed back upstream, so their reference solutions stay out of the public record that model training scrapes; and each task is graded by a hand-written verifier that checks the requested functionality and accepts any implementation that provides it. When an independent LLM judge re-reviews graded runs, it disagrees with DeepSWE's verifier about an order of magnitude less often than with SWE-Bench Pro's inherited tests (1.4% versus 32.4%). Despite being about half the length of SWE-Bench Pro's prompts, DeepSWE's prompts describe tasks whose reference solutions touch 5.5x more code, and the benchmark separates frontier agents across a wider score band than the leaderboards on which they otherwise cluster. We release the benchmark, its verifiers, and the full record of evaluation trajectories.

cs.SE↗

arXiv2026

Distortion-Corrected Diffusion MRI Using Rotated-View EPI and Joint Field-Map/Image Estimation with Gaussian Primitives

Echo Planar Imaging (EPI) is the standard acquisition technique for diffusion and functional neuroimaging, enabling rapid imaging but suffering from geometric distortions caused by B0 field inhomogeneities. Existing correction methods first reconstruct distorted images using parallel imaging, then estimate the B0 field and correct the distortion in the image domain. In this sequential process, reconstruction artifacts at high acceleration factors and low SNR at high diffusion b-values degrade B0 estimation and limit the overall correction quality. We propose a physics-informed framework that jointly estimates the B0 field and distortion-free image directly from k-space data, without depending on an intermediate parallel-imaging reconstruction for the correction. The image and the B0 field are each represented as a superposition of Gaussian primitives embedded within an MRI physics forward model. The explicit, continuous parameterization captures both smooth regions and tissue boundaries and supports rotated-view EPI acquisitions without interpolation. The diffusion-weighted image is modeled as real and non-negative, with the image phase absorbed into a per-shot phase factor. Rotated views distribute distortions across multiple phase-encoding orientations, improving point spread function isotropy and providing stronger constraints for B0 estimation. On in vivo brain diffusion EPI, the proposed method attains the closest brain-boundary agreement with a distortion-free structural reference, with the largest improvement over sequential methods at high b-value and high acceleration. Extensive visual comparisons further show improved detail fidelity and noise suppression.

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arXiv2026

Buffer Matters: Unleashing the Power of Off-Policy Reinforcement Learning in Large Language Model Reasoning

Traditional on-policy Reinforcement Learning with Verifiable Rewards (RLVR) frameworks suffer from experience waste and reward homogeneity, which directly hinders learning efficiency on difficult samples during large language models post-training. In this paper, we introduce Batch Adaptation Policy Optimization (BAPO), an off-policy RLVR framework to improve the data efficiency in large language models post-training. It dynamically selects training batches by re-evaluating historically difficult samples and reusing high-quality ones, while holding a lower bound guarantee for policy improvement. Extensive experiments further demonstrate that BAPO achieves an average 12.5% improvement over GRPO across mathematics, planning, and visual reasoning tasks. Crucially, BAPO successfully resolves 40.7% of problems that base models consistently fail to solve.

cs.AI↗

arXiv2026

Gabor Primitives for Accelerated Cardiac Cine MRI Reconstruction

Accelerated cardiac cine MRI requires reconstructing spatiotemporal images from highly undersampled k-space data. Implicit neural representations (INRs) enable scan-specific reconstruction without large training datasets, but encode content implicitly in network weights without physically interpretable parameters. Gaussian primitives provide an explicit and geometrically interpretable alternative, but their spectra are confined near the k-space origin, limiting high-frequency representation. We propose Gabor primitives for MRI reconstruction, modulating each Gaussian envelope with a complex exponential to place its spectral support at an arbitrary k-space location, enabling efficient representation of both smooth structures and sharp boundaries. To exploit spatiotemporal redundancy in cardiac cine, we decompose per-primitive temporal variation into a low-rank geometry basis capturing cardiac motion and a signal-intensity basis modeling contrast changes. Experiments on cardiac cine data with Cartesian and radial trajectories show that Gabor primitives consistently outperform compressed sensing, Gaussian primitives, and hash-grid INR baselines, while providing a compact, continuous-resolution representation with physically meaningful parameters.

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arXiv2026

WSI-INR: Implicit Neural Representations for Lesion Segmentation in Whole-Slide Images

Whole-slide images (WSIs) are fundamental for computational pathology, where accurate lesion segmentation is critical for clinical decision making. Existing methods partition WSIs into discrete patches, disrupting spatial continuity and treating multi-resolution views as independent samples, which leads to spatially fragmented segmentation and reduced robustness to resolution variations. To address the issues, we propose WSI-INR, a novel patch-free framework based on Implicit Neural Representations (INRs). WSI-INR models the WSI as a continuous implicit function mapping spatial coordinates directly to tissue semantics features, outputting segmentation results while preserving intrinsic spatial information across the entire slide. In the WSI-INR, we incorporate multi-resolution hash grid encoding to regard different resolution levels as varying sampling densities of the same continuous tissue, achieving a consistent feature representation across resolutions. In addition, by jointly training a shared INR decoder, WSI-INR can capture general priors across different cases. Experimental results showed that WSI-INR maintains robust segmentation performance across resolutions; at Base/4, our resolution-specific optimization improves Dice score by +26.11%, while U-Net and TransUNet decrease by 54.28% and 36.18%, respectively. Crucially, this work enables INRs to segment highly heterogeneous pathological lesions beyond structurally consistent anatomical tissues, offering a fresh perspective for pathological analysis.

cs.CV↗

arXiv2026

LLM-DMD: Large Language Model-based Power System Dynamic Model Discovery

Current model structural discovery methods for power system dynamics impose rigid priors on the basis functions and variable sets of dynamic models while often neglecting algebraic constraints, thereby limiting the formulation of high-fidelity models required for precise simulation and analysis. This letter presents a novel large language model (LLM)-based framework for dynamic model discovery (LLM-DMD) which integrates the reasoning and code synthesis capabilities of LLMs to discover dynamic equations and enforce algebraic constraints through two sequential loops: the differential-equation loop that identifies state dynamics and associated variables, and the algebraic-equation loop that formulates algebraic constraints on the identified algebraic variables. In each loop, executable skeletons of power system dynamic equations are generated by the LLM-based agent and evaluated via gradient-based optimizer. Candidate models are stored in an island-based archive to guide future iterations, and evaluation stagnation activates a variable extension mechanism that augments the model with missing algebraic or input variables, such as stator currents to refine the model. Validation on synchronous generator benchmarks of the IEEE 39-bus system demonstrates the superiority of LLM-DMD in complete dynamic model discovery.

eess.SY↗

arXiv2025

Evolutionary System 2 Reasoning: An Empirical Proof

Machine intelligence marks the ultimate dream of making machines' intelligence comparable to human beings. While recent progress in Large Language Models (LLMs) show substantial specific skills for a wide array of downstream tasks, they more or less fall shorts in general intelligence. Following correlation between intelligence and system 2 reasoning (slow thinking), in this paper, we aim to answering a worthwhile research question: could machine intelligence such as LLMs be evolved to acquire reasoning ability (not specific skill) just like our human beings? To this end, we propose evolutionary reasoning optimization (ERO) framework which performs survival of the fittest over a population of LLMs to search for individual with strong reasoning ability. Given a reasoning task, ERO first initializes multiple LLMs as a population, after which an evolutionary strategy evolves the population to maximize quantified reasoning score of the best individual. Based on experiments on representative testsuites, we claim two surprising empirical discoveries: i) the latest LLMs such as GPT-5 still show limited system 2 reasoning ability; ii) with simple evolution-loop of ERO, a relatively weak model (Qwen-7B) could be enhanced to emerge powerful reasoning ability. Our project can be accessed at https://github.com/MetaEvo/ERO for reproduction needs.

cs.AI↗

arXiv2025

Reconstruction-free segmentation from undersampled k-space using transformers

Motivation: High acceleration factors place a limit on MRI image reconstruction. This limit is extended to segmentation models when treating these as subsequent independent processes. Goal: Our goal is to produce segmentations directly from sparse k-space measurements without the need for intermediate image reconstruction. Approach: We employ a transformer architecture to encode global k-space information into latent features. The produced latent vectors condition queried coordinates during decoding to generate segmentation class probabilities. Results: The model is able to produce better segmentations across high acceleration factors than image-based segmentation baselines. Impact: Cardiac segmentation directly from undersampled k-space samples circumvents the need for an intermediate image reconstruction step. This allows the potential to assess myocardial structure and function on higher acceleration factors than methods that rely on images as input.

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arXiv2025

INR meets Multi-Contrast MRI Reconstruction

Multi-contrast MRI sequences allow for the acquisition of images with varying tissue contrast within a single scan. The resulting multi-contrast images can be used to extract quantitative information on tissue microstructure. To make such multi-contrast sequences feasible for clinical routine, the usually very long scan times need to be shortened e.g. through undersampling in k-space. However, this comes with challenges for the reconstruction. In general, advanced reconstruction techniques such as compressed sensing or deep learning-based approaches can enable the acquisition of high-quality images despite the acceleration. In this work, we leverage redundant anatomical information of multi-contrast sequences to achieve even higher acceleration rates. We use undersampling patterns that capture the contrast information located at the k-space center, while performing complementary undersampling across contrasts for high frequencies. To reconstruct this highly sparse k-space data, we propose an implicit neural representation (INR) network that is ideal for using the complementary information acquired across contrasts as it jointly reconstructs all contrast images. We demonstrate the benefits of our proposed INR method by applying it to multi-contrast MRI using the MPnRAGE sequence, where it outperforms the state-of-the-art parallel imaging compressed sensing (PICS) reconstruction method, even at higher acceleration factors.

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arXiv2025

Physics-Informed Implicit Neural Representations for Joint B0 Estimation and Echo Planar Imaging

Echo Planar Imaging (EPI) is widely used for its rapid acquisition but suffers from severe geometric distortions due to B0 inhomogeneities, particularly along the phase encoding direction. Existing methods follow a two-step process: reconstructing blip-up/down EPI images, then estimating B0, which can introduce error accumulation and reduce correction accuracy. This is especially problematic in high B0 regions, where distortions align along the same axis, making them harder to disentangle. In this work, we propose a novel approach that integrates Implicit Neural Representations (INRs) with a physics-informed correction model to jointly estimate B0 inhomogeneities and reconstruct distortion-free images from rotated-view EPI acquisitions. INRs offer a flexible, continuous representation that inherently captures complex spatial variations without requiring predefined grid-based field maps. By leveraging this property, our method dynamically adapts to subject-specific B0 variations and improves robustness across different imaging conditions. Experimental results on 180 slices of brain images from three subjects demonstrate that our approach outperforms traditional methods in terms of reconstruction quality and field estimation accuracy.

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arXiv2025

SenseFlow: A Physics-Informed and Self-Ensembling Iterative Framework for Power Flow Estimation

Power flow estimation plays a vital role in ensuring the stability and reliability of electrical power systems, particularly in the context of growing network complexities and renewable energy integration. However, existing studies often fail to adequately address the unique characteristics of power systems, such as the sparsity of network connections and the critical importance of the unique Slack node, which poses significant challenges in achieving high-accuracy estimations. In this paper, we present SenseFlow, a novel physics-informed and self-ensembling iterative framework that integrates two main designs, the Physics-Informed Power Flow Network (FlowNet) and Self-Ensembling Iterative Estimation (SeIter), to carefully address the unique properties of the power system and thereby enhance the power flow estimation. Specifically, SenseFlow enforces the FlowNet to gradually predict high-precision voltage magnitudes and phase angles through the iterative SeIter process. On the one hand, FlowNet employs the Virtual Node Attention and Slack-Gated Feed-Forward modules to facilitate efficient global-local communication in the face of network sparsity and amplify the influence of the Slack node on angle predictions, respectively. On the other hand, SeIter maintains an exponential moving average of FlowNet's parameters to create a robust ensemble model that refines power state predictions throughout the iterative fitting process. Experimental results demonstrate that SenseFlow outperforms existing methods, providing a promising solution for high-accuracy power flow estimation across diverse grid configurations.

cs.LG↗

arXiv2025

Sim-and-Real Co-Training: A Simple Recipe for Vision-Based Robotic Manipulation

Large real-world robot datasets hold great potential to train generalist robot models, but scaling real-world human data collection is time-consuming and resource-intensive. Simulation has great potential in supplementing large-scale data, especially with recent advances in generative AI and automated data generation tools that enable scalable creation of robot behavior datasets. However, training a policy solely in simulation and transferring it to the real world often demands substantial human effort to bridge the reality gap. A compelling alternative is to co-train the policy on a mixture of simulation and real-world datasets. Preliminary studies have recently shown this strategy to substantially improve the performance of a policy over one trained on a limited amount of real-world data. Nonetheless, the community lacks a systematic understanding of sim-and-real co-training and what it takes to reap the benefits of simulation data for real-robot learning. This work presents a simple yet effective recipe for utilizing simulation data to solve vision-based robotic manipulation tasks. We derive this recipe from comprehensive experiments that validate the co-training strategy on various simulation and real-world datasets. Using two domains--a robot arm and a humanoid--across diverse tasks, we demonstrate that simulation data can enhance real-world task performance by an average of 38%, even with notable differences between the simulation and real-world data. Videos and additional results can be found at https://co-training.github.io/

cs.RO↗

arXiv2025

Empowering Large Language Models in Wireless Communication: A Novel Dataset and Fine-Tuning Framework

In this work, we develop a specialized dataset aimed at enhancing the evaluation and fine-tuning of large language models (LLMs) specifically for wireless communication applications. The dataset includes a diverse set of multi-hop questions, including true/false and multiple-choice types, spanning varying difficulty levels from easy to hard. By utilizing advanced language models for entity extraction and question generation, rigorous data curation processes are employed to maintain high quality and relevance. Additionally, we introduce a Pointwise V-Information (PVI) based fine-tuning method, providing a detailed theoretical analysis and justification for its use in quantifying the information content of training data with 2.24\% and 1.31\% performance boost for different models compared to baselines, respectively. To demonstrate the effectiveness of the fine-tuned models with the proposed methodologies on practical tasks, we also consider different tasks, including summarizing optimization problems from technical papers and solving the mathematical problems related to non-orthogonal multiple access (NOMA), which are generated by using the proposed multi-agent framework. Simulation results show significant performance gain in summarization tasks with 20.9\% in the ROUGE-L metrics. We also study the scaling laws of fine-tuning LLMs and the challenges LLMs face in the field of wireless communications, offering insights into their adaptation to wireless communication tasks. This dataset and fine-tuning methodology aim to enhance the training and evaluation of LLMs, contributing to advancements in LLMs for wireless communication research and applications.

cs.LG↗

arXiv2025

PISCO: Self-Supervised k-Space Regularization for Improved Neural Implicit k-Space Representations of Dynamic MRI

Neural implicit k-space representations (NIK) have shown promising results for dynamic magnetic resonance imaging (MRI) at high temporal resolutions. Yet, reducing acquisition time, and thereby available training data, results in severe performance drops due to overfitting. To address this, we introduce a novel self-supervised k-space loss function $\mathcal{L}_\mathrm{PISCO}$, applicable for regularization of NIK-based reconstructions. The proposed loss function is based on the concept of parallel imaging-inspired self-consistency (PISCO), enforcing a consistent global k-space neighborhood relationship without requiring additional data. Quantitative and qualitative evaluations on static and dynamic MR reconstructions show that integrating PISCO significantly improves NIK representations. Particularly for high acceleration factors (R$\geq$54), NIK with PISCO achieves superior spatio-temporal reconstruction quality compared to state-of-the-art methods. Furthermore, an extensive analysis of the loss assumptions and stability shows PISCO's potential as versatile self-supervised k-space loss function for further applications and architectures. Code is available at: https://github.com/compai-lab/2025-pisco-spieker

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arXiv2024

Subspace Implicit Neural Representations for Real-Time Cardiac Cine MR Imaging

Conventional cardiac cine MRI methods rely on retrospective gating, which limits temporal resolution and the ability to capture continuous cardiac dynamics, particularly in patients with arrhythmias and beat-to-beat variations. To address these challenges, we propose a reconstruction framework based on subspace implicit neural representations for real-time cardiac cine MRI of continuously sampled radial data. This approach employs two multilayer perceptrons to learn spatial and temporal subspace bases, leveraging the low-rank properties of cardiac cine MRI. Initialized with low-resolution reconstructions, the networks are fine-tuned using spoke-specific loss functions to recover spatial details and temporal fidelity. Our method directly utilizes the continuously sampled radial k-space spokes during training, thereby eliminating the need for binning and non-uniform FFT. This approach achieves superior spatial and temporal image quality compared to conventional binned methods at the acceleration rate of 10 and 20, demonstrating potential for high-resolution imaging of dynamic cardiac events and enhancing diagnostic capability.

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arXiv2024

Motion-compensated MR CINE reconstruction with reconstruction-driven motion estimation

In cardiac CINE, motion-compensated MR reconstruction (MCMR) is an effective approach to address highly undersampled acquisitions by incorporating motion information between frames. In this work, we propose a novel perspective for addressing the MCMR problem and a more integrated and efficient solution to the MCMR field. Contrary to state-of-the-art (SOTA) MCMR methods which break the original problem into two sub-optimization problems, i.e. motion estimation and reconstruction, we formulate this problem as a single entity with one single optimization. Our approach is unique in that the motion estimation is directly driven by the ultimate goal, reconstruction, but not by the canonical motion-warping loss (similarity measurement between motion-warped images and target images). We align the objectives of motion estimation and reconstruction, eliminating the drawbacks of artifacts-affected motion estimation and therefore error-propagated reconstruction. Further, we can deliver high-quality reconstruction and realistic motion without applying any regularization/smoothness loss terms, circumventing the non-trivial weighting factor tuning. We evaluate our method on two datasets: 1) an in-house acquired 2D CINE dataset for the retrospective study and 2) the public OCMR cardiac dataset for the prospective study. The conducted experiments indicate that the proposed MCMR framework can deliver artifact-free motion estimation and high-quality MR images even for imaging accelerations up to 20x, outperforming SOTA non-MCMR and MCMR methods in both qualitative and quantitative evaluation across all experiments. The code is available at https://github.com/JZPeterPan/MCMR-Recon-Driven-Motion.

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