arXiv subjects

Wenxin Fan

Publications and source records attributed to Wenxin Fan.

15 recordsLinked to original sources

arXiv2026

Large-Small Model Collaboration for Zero-Shot Surgical Phase Recognition

Task-specific lightweight models for surgical phase recognition excel at capturing temporal dynamics but generalize poorly under domain shift. Conversely, surgical foundation models (FMs) offer superior transferability via large-scale pretraining, yet their lack of explicit temporal modeling often yields temporally inconsistent predictions, leading to degraded performance. To exploit the complementary strengths of both paradigms, we propose \textbf{La}rge-\textbf{S}mall \textbf{T}emporal adaptation (\textbf{LaST}), a novel large-small collaborative framework that enables zero-shot adaptation to unseen clinical domains. In LaST, the FM initiates the pipeline by generating frame-level phase priors that serve as initial weak supervision. To effectively utilize these noisy phase priors, we introduce an iterative temporal refinement scheme that integrates dynamic quality control to filter reliable predictions and dual-model cross-learning to mitigate confirmation bias. Simultaneously, the lightweight model leverages its intrinsic temporal modeling ability to progressively correct inconsistent predictions and enhance overall accuracy across iterations. At the end, a cycle replay strategy is employed to close the loop: the refined, more accurate predictions are utilized as upgraded supervision signals for the subsequent iterations, fostering a self-reinforcing evolution of both label quality and model capability. Extensive experiments demonstrate that LaST achieves robust adaptation to unseen domains for zero-shot surgical phase recognition, outperforming the baseline (PeskaVLP) by 24.85\%-43.17\% in accuracy and even surpassing fully supervised linear probing and several state-of-the-art few-shot approaches. Codes will be released at https://github.com/YIYIZH/LaST.

cs.CV↗

arXiv2025

3D Anatomical Structure-guided Deep Learning for Accurate Diffusion Microstructure Imaging

Diffusion magnetic resonance imaging (dMRI) is a crucial non-invasive technique for exploring the microstructure of the living human brain. Traditional hand-crafted and model-based tissue microstructure reconstruction methods often require extensive diffusion gradient sampling, which can be time-consuming and limits the clinical applicability of tissue microstructure information. Recent advances in deep learning have shown promise in microstructure estimation; however, accurately estimating tissue microstructure from clinically feasible dMRI scans remains challenging without appropriate constraints. This paper introduces a novel framework that achieves high-fidelity and rapid diffusion microstructure imaging by simultaneously leveraging anatomical information from macro-level priors and mutual information across parameters. This approach enhances time efficiency while maintaining accuracy in microstructure estimation. Experimental results demonstrate that our method outperforms four state-of-the-art techniques, achieving a peak signal-to-noise ratio (PSNR) of 30.51$\pm$0.58 and a structural similarity index measure (SSIM) of 0.97$\pm$0.004 in estimating parametric maps of multiple diffusion models. Notably, our method achieves a 15$\times$ acceleration compared to the dense sampling approach, which typically utilizes 270 diffusion gradients.

eess.IV↗

arXiv2025

Spatial-Angular Representation Learning for High-Fidelity Continuous Super-Resolution in Diffusion MRI

Diffusion magnetic resonance imaging (dMRI) often suffers from low spatial and angular resolution due to inherent limitations in imaging hardware and system noise, adversely affecting the accurate estimation of microstructural parameters with fine anatomical details. Deep learning-based super-resolution techniques have shown promise in enhancing dMRI resolution without increasing acquisition time. However, most existing methods are confined to either spatial or angular super-resolution, limiting their effectiveness in capturing detailed microstructural features. Furthermore, traditional pixel-wise loss functions struggle to recover intricate image details essential for high-resolution reconstruction. To address these challenges, we propose SARL-dMRI, a novel Spatial-Angular Representation Learning framework for high-fidelity, continuous super-resolution in dMRI. SARL-dMRI explores implicit neural representations and spherical harmonics to model continuous spatial and angular representations, simultaneously enhancing both spatial and angular resolution while improving microstructural parameter estimation accuracy. To further preserve image fidelity, a data-fidelity module and wavelet-based frequency loss are introduced, ensuring the super-resolved images remain consistent with the original input and retain fine details. Extensive experiments demonstrate that, compared to five other state-of-the-art methods, our method significantly enhances dMRI data resolution, improves the accuracy of microstructural parameter estimation, and provides better generalization capabilities. It maintains stable performance even under a 45$\times$ downsampling factor.

eess.IV↗

arXiv2024

SamRobNODDI: Q-Space Sampling-Augmented Continuous Representation Learning for Robust and Generalized NODDI

Neurite Orientation Dispersion and Density Imaging (NODDI) microstructure estimation from diffusion magnetic resonance imaging (dMRI) is of great significance for the discovery and treatment of various neurological diseases. Current deep learning-based methods accelerate the speed of NODDI parameter estimation and improve the accuracy. However, most methods require the number and coordinates of gradient directions during testing and training to remain strictly consistent, significantly limiting the generalization and robustness of these models in NODDI parameter estimation. In this paper, we propose a q-space sampling augmentation-based continuous representation learning framework (SamRobNODDI) to achieve robust and generalized NODDI. Specifically, a continuous representation learning method based on q-space sampling augmentation is introduced to fully explore the information between different gradient directions in q-space. Furthermore, we design a sampling consistency loss to constrain the outputs of different sampling schemes, ensuring that the outputs remain as consistent as possible, thereby further enhancing performance and robustness to varying q-space sampling schemes. SamRobNODDI is also a flexible framework that can be applied to different backbone networks. To validate the effectiveness of the proposed method, we compared it with 7 state-of-the-art methods across 18 different q-space sampling schemes, demonstrating that the proposed SamRobNODDI has better performance, robustness, generalization, and flexibility.

cs.CV↗

arXiv2024

CSR-dMRI: Continuous Super-Resolution of Diffusion MRI with Anatomical Structure-assisted Implicit Neural Representation Learning

Deep learning-based dMRI super-resolution methods can effectively enhance image resolution by leveraging the learning capabilities of neural networks on large datasets. However, these methods tend to learn a fixed scale mapping between low-resolution (LR) and high-resolution (HR) images, overlooking the need for radiologists to scale the images at arbitrary resolutions. Moreover, the pixel-wise loss in the image domain tends to generate over-smoothed results, losing fine textures and edge information. To address these issues, we propose a novel continuous super-resolution method for dMRI, called CSR-dMRI, which utilizes an anatomical structure-assisted implicit neural representation learning approach. Specifically, the CSR-dMRI model consists of two components. The first is the latent feature extractor, which primarily extracts latent space feature maps from LR dMRI and anatomical images while learning structural prior information from the anatomical images. The second is the implicit function network, which utilizes voxel coordinates and latent feature vectors to generate voxel intensities at corresponding positions. Additionally, a frequency-domain-based loss is introduced to preserve the structural and texture information, further enhancing the image quality. Extensive experiments on the publicly available HCP dataset validate the effectiveness of our approach. Furthermore, our method demonstrates superior generalization capability and can be applied to arbitrary-scale super-resolution, including non-integer scale factors, expanding its applicability beyond conventional approaches.

eess.IV↗

arXiv2024

RobNODDI: Robust NODDI Parameter Estimation with Adaptive Sampling under Continuous Representation

Neurite Orientation Dispersion and Density Imaging (NODDI) is an important imaging technology used to evaluate the microstructure of brain tissue, which is of great significance for the discovery and treatment of various neurological diseases. Current deep learning-based methods perform parameter estimation through diffusion magnetic resonance imaging (dMRI) with a small number of diffusion gradients. These methods speed up parameter estimation and improve accuracy. However, the diffusion directions used by most existing deep learning models during testing needs to be strictly consistent with the diffusion directions during training. This results in poor generalization and robustness of deep learning models in dMRI parameter estimation. In this work, we verify for the first time that the parameter estimation performance of current mainstream methods will significantly decrease when the testing diffusion directions and the training diffusion directions are inconsistent. A robust NODDI parameter estimation method with adaptive sampling under continuous representation (RobNODDI) is proposed. Furthermore, long short-term memory (LSTM) units and fully connected layers are selected to learn continuous representation signals. To this end, we use a total of 100 subjects to conduct experiments based on the Human Connectome Project (HCP) dataset, of which 60 are used for training, 20 are used for validation, and 20 are used for testing. The test results indicate that RobNODDI improves the generalization performance and robustness of the deep learning model, enhancing the stability and flexibility of deep learning NODDI parameter estimatimation applications.

cs.CV↗

arXiv2024

AID-DTI: Accelerating High-fidelity Diffusion Tensor Imaging with Detail-preserving Model-based Deep Learning

Deep learning has shown great potential in accelerating diffusion tensor imaging (DTI). Nevertheless, existing methods tend to suffer from Rician noise and eddy current, leading to detail loss in reconstructing the DTI-derived parametric maps especially when sparsely sampled q-space data are used. To address this, this paper proposes a novel method, AID-DTI (\textbf{A}ccelerating h\textbf{I}gh fi\textbf{D}elity \textbf{D}iffusion \textbf{T}ensor \textbf{I}maging), to facilitate fast and accurate DTI with only six measurements. AID-DTI is equipped with a newly designed Singular Value Decomposition-based regularizer, which can effectively capture fine details while suppressing noise during network training by exploiting the correlation across DTI-derived parameters. Additionally, we introduce a Nesterov-based adaptive learning algorithm that optimizes the regularization parameter dynamically to enhance the performance. AID-DTI is an extendable framework capable of incorporating flexible network architecture. Experimental results on Human Connectome Project (HCP) data consistently demonstrate that the proposed method estimates DTI parameter maps with fine-grained details and outperforms other state-of-the-art methods both quantitatively and qualitatively.

eess.IV↗

arXiv2024

Sequential Model for Predicting Patient Adherence in Subcutaneous Immunotherapy for Allergic Rhinitis

Objective: Subcutaneous Immunotherapy (SCIT) is the long-lasting causal treatment of allergic rhinitis (AR). How to enhance the adherence of patients to maximize the benefit of allergen immunotherapy (AIT) plays a crucial role in the management of AIT. This study aims to leverage novel machine learning models to precisely predict the risk of non-adherence of AR patients and related local symptom scores in three years SCIT. Methods: The research develops and analyzes two models, sequential latent-variable model (SLVM) of Stochastic Latent Actor-Critic (SLAC) and Long Short-Term Memory (LSTM) evaluating them based on scoring and adherence prediction capabilities. Results: Excluding the biased samples at the first time step, the predictive adherence accuracy of the SLAC models is from 60\% to 72\%, and for LSTM models, it is 66\% to 84\%, varying according to the time steps. The range of Root Mean Square Error (RMSE) for SLAC models is between 0.93 and 2.22, while for LSTM models it is between 1.09 and 1.77. Notably, these RMSEs are significantly lower than the random prediction error of 4.55. Conclusion: We creatively apply sequential models in the long-term management of SCIT with promising accuracy in the prediction of SCIT nonadherence in AR patients. While LSTM outperforms SLAC in adherence prediction, SLAC excels in score prediction for patients undergoing SCIT for AR. The state-action-based SLAC adds flexibility, presenting a novel and effective approach for managing long-term AIT.

cs.LG↗

arXiv2024

DeepMpMRI: Tensor-decomposition Regularized Learning for Fast and High-Fidelity Multi-Parametric Microstructural MR Imaging

Deep learning has emerged as a promising approach for learning the nonlinear mapping between diffusion-weighted MR images and tissue parameters, which enables automatic and deep understanding of the brain microstructures. However, the efficiency and accuracy in estimating multiple microstructural parameters derived from multiple diffusion models are still limited since previous studies tend to estimate parameter maps from distinct models with isolated signal modeling and dense sampling. This paper proposes DeepMpMRI, an efficient framework for fast and high-fidelity multiple microstructural parameter estimation from multiple models using highly sparse sampled q-space data. DeepMpMRI is equipped with a newly designed tensor-decomposition-based regularizer to effectively capture fine details by exploiting the high-dimensional correlation across microstructural parameters. In addition, we introduce a Nesterov-based adaptive learning algorithm that optimizes the regularization parameter dynamically to enhance the performance. DeepMpMRI is an extendable framework capable of incorporating flexible network architecture. Experimental results on the HCP dataset and the Alzheimer's disease dataset both demonstrate the superiority of our approach over 5 state-of-the-art methods in simultaneously estimating multi-model microstructural parameter maps for DKI and NODDI model with fine-grained details both quantitatively and qualitatively, achieving 4.5 - 15 $\times$ acceleration compared to the dense sampling of a total of 270 diffusion gradients.

cs.CV↗

arXiv2024

Simultaneous q-Space Sampling Optimization and Reconstruction for Fast and High-fidelity Diffusion Magnetic Resonance Imaging

Diffusion Magnetic Resonance Imaging (dMRI) plays a crucial role in the noninvasive investigation of tissue microstructural properties and structural connectivity in the \textit{in vivo} human brain. However, to effectively capture the intricate characteristics of water diffusion at various directions and scales, it is important to employ comprehensive q-space sampling. Unfortunately, this requirement leads to long scan times, limiting the clinical applicability of dMRI. To address this challenge, we propose SSOR, a Simultaneous q-Space sampling Optimization and Reconstruction framework. We jointly optimize a subset of q-space samples using a continuous representation of spherical harmonic functions and a reconstruction network. Additionally, we integrate the unique properties of diffusion magnetic resonance imaging (dMRI) in both the q-space and image domains by applying $l1$-norm and total-variation regularization. The experiments conducted on HCP data demonstrate that SSOR has promising strengths both quantitatively and qualitatively and exhibits robustness to noise.

cs.CV↗

arXiv2024

AID-DTI: Accelerating High-fidelity Diffusion Tensor Imaging with Detail-Preserving Model-based Deep Learning

Deep learning has shown great potential in accelerating diffusion tensor imaging (DTI). Nevertheless, existing methods tend to suffer from Rician noise and detail loss in reconstructing the DTI-derived parametric maps especially when sparsely sampled q-space data are used. This paper proposes a novel method, AID-DTI (Accelerating hIgh fiDelity Diffusion Tensor Imaging), to facilitate fast and accurate DTI with only six measurements. AID-DTI is equipped with a newly designed Singular Value Decomposition (SVD)-based regularizer, which can effectively capture fine details while suppressing noise during network training. Experimental results on Human Connectome Project (HCP) data consistently demonstrate that the proposed method estimates DTI parameter maps with fine-grained details and outperforms three state-of-the-art methods both quantitatively and qualitatively.

cs.CV↗

arXiv2023

Multiplexed entanglement swapping with atomic-ensemble-based quantum memories in the single excitation regime

Entanglement swapping (ES) between memory repeater links is critical for establishing quantum networks via quantum repeaters. So far, ES with atomic-ensemble-based memories has not been achieved. Here, we experimentally demonstrated ES between two entangled pairs of spin-wave memories via Duan-Lukin-Cirac-Zoller scheme. With a cloud of cold atoms inserted in a cavity, we produce non-classically-correlated spin-wave-photon pairs in 12 spatial modes and then prepare two entangled pairs of spin-wave memories via a multiplexed scheme. Via single-photon Bell measurement on retrieved fields from two memories, we project the two remaining memories never entangled previously into an entangled state with the measured concurrence of C = 0.0124(0.003). The successful probability of ES in our scheme is increased by three times, compared with that in non-multiplexed scheme. Our presented work shows that the generation of entanglement (C>0) between the remaining memory ensembles requires the average cross-correlation function of the spin-wave-photon pairs to be >30 .

quant-ph↗

arXiv2023

Proof-of-principle demonstration of temporally multiplexed quantum repeater link based on atomic ensemble

Duan-Lukin-Cirac-Zoller quantum repeater protocol provides a feasible scheme to implement long-distance quantum communication and large-scale quantum networks. The elementary link, namely the entanglement between two atomic ensembles, is a fundamental component of quantum repeater. For practical quantum repeater, it is required that the elementary link can be prepared with high yield and the spin waves stored in atoms can be efficiently converted into photons on demand. However, so far, such quantum repeater link has not been demonstrated in experiments. Here, we demonstrate a proof-of-principle multiplexed quantum repeater link by entangling two temporally multiplexed quantum memory. Compared with a single-mode link, the successful preparation rate of the multiplexed link is increased by one order of magnitude. By using the cavity-enhanced scheme, the on-demand retrieval efficiency of atomic spin waves is improved to 70%, which is beneficial for the subsequent entanglement swapping between adjacent links. The realization of temporally multiplexed quantum repeater link with high retrieval efficiency lays a foundation for the development of practical quantum networks.

quant-ph↗

arXiv2023

Cavity-enhanced and spatial-multimode spin-wave-photon quantum interface

Practical realizations of quantum repeaters require quantum memory simultaneously providing high retrieval efficiency, long lifetime and multimode storages. So far, the combination of high retrieval efficiency and spatially multiplexed storages into a single memory remains challenging. Here, we set up a ring cavity that supports an array including 6 TEM00 modes and then demonstrated cavity enhanced and spatially multiplexed spin wave photon quantum interface (QI). The cavity arrangement is according to Fermat' optical theorem, which enables the six modes to experience the same optical length per round trip. Each mode includesn horizontal and vertical polarizations. Via DLCZ process in a cold atomic ensemble, we create non classically correlated pairs of spin waves and Stokes photons in the 12 modes. The retrieved fields from the multiplexed SWs are enhanced by the cavity and the average intrinsic retrieval efficiency reaches 70% at zero delay. The storage time for the case that cross-correlation function of the multiplexed QI is beyond 2 reaches 0.6ms .

quant-ph↗

arXiv2022

Rethinking the optimization process for self-supervised model-driven MRI reconstruction

Recovering high-quality images from undersampled measurements is critical for accelerated MRI reconstruction. Recently, various supervised deep learning-based MRI reconstruction methods have been developed. Despite the achieved promising performances, these methods require fully sampled reference data, the acquisition of which is resource-intensive and time-consuming. Self-supervised learning has emerged as a promising solution to alleviate the reliance on fully sampled datasets. However, existing self-supervised methods suffer from reconstruction errors due to the insufficient constraint enforced on the non-sampled data points and the error accumulation happened alongside the iterative image reconstruction process for model-driven deep learning reconstrutions. To address these challenges, we propose K2Calibrate, a K-space adaptation strategy for self-supervised model-driven MR reconstruction optimization. By iteratively calibrating the learned measurements, K2Calibrate can reduce the network's reconstruction deterioration caused by statistically dependent noise. Extensive experiments have been conducted on the open-source dataset FastMRI, and K2Calibrate achieves better results than five state-of-the-art methods. The proposed K2Calibrate is plug-and-play and can be easily integrated with different model-driven deep learning reconstruction methods.

eess.IV↗