arXiv subjects

Wenyu Chen

Publications and source records attributed to Wenyu Chen.

At least 55 records · Page 3Linked to original sources

arXiv2024

One Node One Model: Featuring the Missing-Half for Graph Clustering

Most existing graph clustering methods primarily focus on exploiting topological structure, often neglecting the ``missing-half" node feature information, especially how these features can enhance clustering performance. This issue is further compounded by the challenges associated with high-dimensional features. Feature selection in graph clustering is particularly difficult because it requires simultaneously discovering clusters and identifying the relevant features for these clusters. To address this gap, we introduce a novel paradigm called ``one node one model", which builds an exclusive model for each node and defines the node label as a combination of predictions for node groups. Specifically, the proposed ``Feature Personalized Graph Clustering (FPGC)" method identifies cluster-relevant features for each node using a squeeze-and-excitation block, integrating these features into each model to form the final representations. Additionally, the concept of feature cross is developed as a data augmentation technique to learn low-order feature interactions. Extensive experimental results demonstrate that FPGC outperforms state-of-the-art clustering methods. Moreover, the plug-and-play nature of our method provides a versatile solution to enhance GNN-based models from a feature perspective.

cs.LG↗

arXiv2024

Quantifying sex differences in brain network topology by aggregating nodal centrality rankings

Although numerous studies report significant sex differences in functional connectivity, these differences do not sufficient to reveal specific functional disparities among brain regions or the topological differences in brain networks. Meanwhile, individual differences could potentially bias the understanding of these sex differences. To address these challenges, we propose a consensus rank-based method to quantify sex differences in four node centrality ranking within the functional brain network. This method aggregates individuals' nodal centrality rankings into a consensus or "average" ranking, minimizing the impact of outliers and enhancing the robustness of the findings. By analyzing resting-state functional MRI data from 1,948 healthy young adults (aged 18-27 years, 1,163 females), we find significant sex differences in the topology of functional brain network, primarily attributed to biological sex rather than individual differences. Particularly, sex accounts for approximately 10% of the differences in nodal centrality consensus rankings. Using a rank difference index (RDI), we identify eight critical brain regions with the greatest rank differences, including the insula, supramarginal gyrus, and dorsolateral superior frontal gyrus. females show higher rankings in regions with stronger intra-system connections, whereas males dominate in areas with stronger inter-system connections. Our findings enhance our understanding of sex-specific characteristics in functional brain networks. Moreover, our approach may offer novel insights into targeted population studies, including those involving healthy individuals and patients with brain injuries.

q-bio.QM↗

arXiv2024

Sex Differences in Hierarchical and Modular Organization of Functional Brain Networks: Insights from Hierarchical Entropy and Modularity Analysis

Existing studies have demonstrated significant sex differences in the neural mechanisms of daily life and neuropsychiatric disorders. The hierarchical organization of the functional brain network is a critical feature for assessing these neural mechanisms. But sex differences on the hierarchical organization is not fully investigated. Here, we explore whether hierarchical structure of brain network differs between females and males. At the group level, we measure the hierarchical entropy and the maximum modularity of each individual, and identify a significant negative correlation between the complexity of hierarchy and modularity in brain networks. On average, female brain networks have stronger connectivity within the module, whereas male brain networks demonstrate more complex hierarchy. At the consensus level, we use co-classification matrix to investigate the detailed differences in the hierarchical organization between sexes and observe that females and males exhibit different interaction patterns of brain regions in the dorsal attention network (DAN) and visual network (VIN). Our finding suggests that females and males employ different network topology to achieve brain functions. In addition, the negative correlation between hierarchy and modularity implies a need to balance the complexity in hierarchical organization of the brain network, which shed light on future studies of brain functions.

q-bio.NC↗

arXiv2024

A Compressive Memory-based Retrieval Approach for Event Argument Extraction

Recent works have demonstrated the effectiveness of retrieval augmentation in the Event Argument Extraction (EAE) task. However, existing retrieval-based EAE methods have two main limitations: (1) input length constraints and (2) the gap between the retriever and the inference model. These issues limit the diversity and quality of the retrieved information. In this paper, we propose a Compressive Memory-based Retrieval (CMR) mechanism for EAE, which addresses the two limitations mentioned above. Our compressive memory, designed as a dynamic matrix that effectively caches retrieved information and supports continuous updates, overcomes the limitations of the input length. Additionally, after pre-loading all candidate demonstrations into the compressive memory, the model further retrieves and filters relevant information from memory based on the input query, bridging the gap between the retriever and the inference model. Extensive experiments show that our method achieves new state-of-the-art performance on three public datasets (RAMS, WikiEvents, ACE05), significantly outperforming existing retrieval-based EAE methods.

cs.CL↗

arXiv2024

Cultural Compass: Predicting Transfer Learning Success in Offensive Language Detection with Cultural Features

The increasing ubiquity of language technology necessitates a shift towards considering cultural diversity in the machine learning realm, particularly for subjective tasks that rely heavily on cultural nuances, such as Offensive Language Detection (OLD). Current understanding underscores that these tasks are substantially influenced by cultural values, however, a notable gap exists in determining if cultural features can accurately predict the success of cross-cultural transfer learning for such subjective tasks. Addressing this, our study delves into the intersection of cultural features and transfer learning effectiveness. The findings reveal that cultural value surveys indeed possess a predictive power for cross-cultural transfer learning success in OLD tasks and that it can be further improved using offensive word distance. Based on these results, we advocate for the integration of cultural information into datasets. Additionally, we recommend leveraging data sources rich in cultural information, such as surveys, to enhance cultural adaptability. Our research signifies a step forward in the quest for more inclusive, culturally sensitive language technologies.

cs.CL↗

arXiv2024

How to Train Text Summarization Model with Weak Supervisions

Currently, machine learning techniques have seen significant success across various applications. Most of these techniques rely on supervision from human-generated labels or a mixture of noisy and imprecise labels from multiple sources. However, for certain complex tasks, even noisy or inexact labels are unavailable due to the intricacy of the objectives. To tackle this issue, we propose a method that breaks down the complex objective into simpler tasks and generates supervision signals for each one. We then integrate these supervision signals into a manageable form, resulting in a straightforward learning procedure. As a case study, we demonstrate a system used for topic-based summarization. This system leverages rich supervision signals to promote both summarization and topic relevance. Remarkably, we can train the model end-to-end without any labels. Experimental results indicate that our approach performs exceptionally well on the CNN and DailyMail datasets.

cs.CL↗

arXiv2024

Accelerated Markov Chain Monte Carlo Using Adaptive Weighting Scheme

Gibbs sampling is one of the most commonly used Markov Chain Monte Carlo (MCMC) algorithms due to its simplicity and efficiency. It cycles through the latent variables, sampling each one from its distribution conditional on the current values of all the other variables. Conventional Gibbs sampling is based on the systematic scan (with a deterministic order of variables). In contrast, in recent years, Gibbs sampling with random scan has shown its advantage in some scenarios. However, almost all the analyses of Gibbs sampling with the random scan are based on uniform selection of variables. In this paper, we focus on a random scan Gibbs sampling method that selects each latent variable non-uniformly. Firstly, we show that this non-uniform scan Gibbs sampling leaves the target posterior distribution invariant. Then we explore how to determine the selection probability for latent variables. In particular, we construct an objective as a function of the selection probability and solve the constrained optimization problem. We further derive an analytic solution of the selection probability, which can be estimated easily. Our algorithm relies on the simple intuition that choosing the variable updates according to their marginal probabilities enhances the mixing time of the Markov chain. Finally, we validate the effectiveness of the proposed Gibbs sampler by conducting a set of experiments on real-world applications.

cs.LG↗

arXiv2024

SGCCNet: Single-Stage 3D Object Detector With Saliency-Guided Data Augmentation and Confidence Correction Mechanism

The single-stage point-based 3D object detectors have attracted widespread research interest due to their advantages of lightweight and fast inference speed. However, they still face challenges such as inadequate learning of low-quality objects (ILQ) and misalignment between localization accuracy and classification confidence (MLC). In this paper, we propose SGCCNet to alleviate these two issues. For ILQ, SGCCNet adopts a Saliency-Guided Data Augmentation (SGDA) strategy to enhance the robustness of the model on low-quality objects by reducing its reliance on salient features. Specifically, We construct a classification task and then approximate the saliency scores of points by moving points towards the point cloud centroid in a differentiable process. During the training process, SGCCNet will be forced to learn from low saliency features through dropping points. Meanwhile, to avoid internal covariate shift and contextual features forgetting caused by dropping points, we add a geometric normalization module and skip connection block in each stage. For MLC, we design a Confidence Correction Mechanism (CCM) specifically for point-based multi-class detectors. This mechanism corrects the confidence of the current proposal by utilizing the predictions of other key points within the local region in the post-processing stage. Extensive experiments on the KITTI dataset demonstrate the generality and effectiveness of our SGCCNet. On the KITTI \textit{test} set, SGCCNet achieves $80.82\%$ for the metric of $AP_{3D}$ on the \textit{Moderate} level, outperforming all other point-based detectors, surpassing IA-SSD and Fast Point R-CNN by $2.35\%$ and $3.42\%$, respectively. Additionally, SGCCNet demonstrates excellent portability for other point-based detectors

cs.CV↗

arXiv2024

AntibodyFlow: Normalizing Flow Model for Designing Antibody Complementarity-Determining Regions

Therapeutic antibodies have been extensively studied in drug discovery and development in the past decades. Antibodies are specialized protective proteins that bind to antigens in a lock-to-key manner. The binding strength/affinity between an antibody and a specific antigen is heavily determined by the complementarity-determining regions (CDRs) on the antibodies. Existing machine learning methods cast in silico development of CDRs as either sequence or 3D graph (with a single chain) generation tasks and have achieved initial success. However, with CDR loops having specific geometry shapes, learning the 3D geometric structures of CDRs remains a challenge. To address this issue, we propose AntibodyFlow, a 3D flow model to design antibody CDR loops. Specifically, AntibodyFlow first constructs the distance matrix, then predicts amino acids conditioned on the distance matrix. Also, AntibodyFlow conducts constraint learning and constrained generation to ensure valid 3D structures. Experimental results indicate that AntibodyFlow outperforms the best baseline consistently with up to 16.0% relative improvement in validity rate and 24.3% relative reduction in geometric graph level error (root mean square deviation, RMSD).

cs.LG↗

arXiv2024

Beyond Single-Event Extraction: Towards Efficient Document-Level Multi-Event Argument Extraction

Recent mainstream event argument extraction methods process each event in isolation, resulting in inefficient inference and ignoring the correlations among multiple events. To address these limitations, here we propose a multiple-event argument extraction model DEEIA (Dependency-guided Encoding and Event-specific Information Aggregation), capable of extracting arguments from all events within a document simultaneouslyThe proposed DEEIA model employs a multi-event prompt mechanism, comprising DE and EIA modules. The DE module is designed to improve the correlation between prompts and their corresponding event contexts, whereas the EIA module provides event-specific information to improve contextual understanding. Extensive experiments show that our method achieves new state-of-the-art performance on four public datasets (RAMS, WikiEvents, MLEE, and ACE05), while significantly saving the inference time compared to the baselines. Further analyses demonstrate the effectiveness of the proposed modules.

cs.CL↗

arXiv2024

Utilizing Contextual Clues and Role Correlations for Enhancing Document-level Event Argument Extraction

Document-level event argument extraction is a crucial yet challenging task within the field of information extraction. Current mainstream approaches primarily focus on the information interaction between event triggers and their arguments, facing two limitations: insufficient context interaction and the ignorance of event correlations. Here, we introduce a novel framework named CARLG (Contextual Aggregation of clues and Role-based Latent Guidance), comprising two innovative components: the Contextual Clues Aggregation (CCA) and the Role-based Latent Information Guidance (RLIG). The CCA module leverages the attention weights derived from a pre-trained encoder to adaptively assimilates broader contextual information, while the RLIG module aims to capture the semantic correlations among event roles. We then instantiate the CARLG framework into two variants based on two types of current mainstream EAE approaches. Notably, our CARLG framework introduces less than 1% new parameters yet significantly improving the performance. Comprehensive experiments across the RAMS, WikiEvents, and MLEE datasets confirm the superiority of CARLG, showing significant superiority in terms of both performance and inference speed compared to major benchmarks. Further analyses demonstrate the effectiveness of the proposed modules.

cs.CL↗

arXiv2024

Learning Directed Acyclic Graphs from Partial Orderings

Directed acyclic graphs (DAGs) are commonly used to model causal relationships among random variables. In general, learning the DAG structure is both computationally and statistically challenging. Moreover, without additional information, the direction of edges may not be estimable from observational data. In contrast, given a complete causal ordering of the variables, the problem can be solved efficiently, even in high dimensions. In this paper, we consider the intermediate problem of learning DAGs when a partial causal ordering of variables is available. We propose a general estimation framework for leveraging the partial ordering and present efficient estimation algorithms for low- and high-dimensional problems. The advantages of the proposed framework are illustrated via numerical studies.

stat.ML↗

arXiv2024

FALCON: FLOP-Aware Combinatorial Optimization for Neural Network Pruning

The increasing computational demands of modern neural networks present deployment challenges on resource-constrained devices. Network pruning offers a solution to reduce model size and computational cost while maintaining performance. However, most current pruning methods focus primarily on improving sparsity by reducing the number of nonzero parameters, often neglecting other deployment costs such as inference time, which are closely related to the number of floating-point operations (FLOPs). In this paper, we propose FALCON, a novel combinatorial-optimization-based framework for network pruning that jointly takes into account model accuracy (fidelity), FLOPs, and sparsity constraints. A main building block of our approach is an integer linear program (ILP) that simultaneously handles FLOP and sparsity constraints. We present a novel algorithm to approximately solve the ILP. We propose a novel first-order method for our optimization framework which makes use of our ILP solver. Using problem structure (e.g., the low-rank structure of approx. Hessian), we can address instances with millions of parameters. Our experiments demonstrate that FALCON achieves superior accuracy compared to other pruning approaches within a fixed FLOP budget. For instance, for ResNet50 with 20% of the total FLOPs retained, our approach improves the accuracy by 48% relative to state-of-the-art. Furthermore, in gradual pruning settings with re-training between pruning steps, our framework outperforms existing pruning methods, emphasizing the significance of incorporating both FLOP and sparsity constraints for effective network pruning.

cs.LG↗

arXiv2024

Robust Graph Structure Learning under Heterophily

Graph is a fundamental mathematical structure in characterizing relations between different objects and has been widely used on various learning tasks. Most methods implicitly assume a given graph to be accurate and complete. However, real data is inevitably noisy and sparse, which will lead to inferior results. Despite the remarkable success of recent graph representation learning methods, they inherently presume that the graph is homophilic, and largely overlook heterophily, where most connected nodes are from different classes. In this regard, we propose a novel robust graph structure learning method to achieve a high-quality graph from heterophilic data for downstream tasks. We first apply a high-pass filter to make each node more distinctive from its neighbors by encoding structure information into the node features. Then, we learn a robust graph with an adaptive norm characterizing different levels of noise. Afterwards, we propose a novel regularizer to further refine the graph structure. Clustering and semi-supervised classification experiments on heterophilic graphs verify the effectiveness of our method.

cs.LG↗

arXiv2024

3D Object Visibility Prediction in Autonomous Driving

With the rapid advancement of hardware and software technologies, research in autonomous driving has seen significant growth. The prevailing framework for multi-sensor autonomous driving encompasses sensor installation, perception, path planning, decision-making, and motion control. At the perception phase, a common approach involves utilizing neural networks to infer 3D bounding box (Bbox) attributes from raw sensor data, including classification, size, and orientation. In this paper, we present a novel attribute and its corresponding algorithm: 3D object visibility. By incorporating multi-task learning, the introduction of this attribute, visibility, negligibly affects the model's effectiveness and efficiency. Our proposal of this attribute and its computational strategy aims to expand the capabilities for downstream tasks, thereby enhancing the safety and reliability of real-time autonomous driving in real-world scenarios.

cs.RO↗

arXiv2024

DPGNN: Dual-Perception Graph Neural Network for Representation Learning

Graph neural networks (GNNs) have drawn increasing attention in recent years and achieved remarkable performance in many graph-based tasks, especially in semi-supervised learning on graphs. However, most existing GNNs are based on the message-passing paradigm to iteratively aggregate neighborhood information in a single topology space. Despite their success, the expressive power of GNNs is limited by some drawbacks, such as inflexibility of message source expansion, negligence of node-level message output discrepancy, and restriction of single message space. To address these drawbacks, we present a novel message-passing paradigm, based on the properties of multi-step message source, node-specific message output, and multi-space message interaction. To verify its validity, we instantiate the new message-passing paradigm as a Dual-Perception Graph Neural Network (DPGNN), which applies a node-to-step attention mechanism to aggregate node-specific multi-step neighborhood information adaptively. Our proposed DPGNN can capture the structural neighborhood information and the feature-related information simultaneously for graph representation learning. Experimental results on six benchmark datasets with different topological structures demonstrate that our method outperforms the latest state-of-the-art models, which proves the superiority and versatility of our method. To our knowledge, we are the first to consider node-specific message passing in the GNNs.

cs.LG↗

arXiv2024

MLPs Compass: What is learned when MLPs are combined with PLMs?

While Transformer-based pre-trained language models and their variants exhibit strong semantic representation capabilities, the question of comprehending the information gain derived from the additional components of PLMs remains an open question in this field. Motivated by recent efforts that prove Multilayer-Perceptrons (MLPs) modules achieving robust structural capture capabilities, even outperforming Graph Neural Networks (GNNs), this paper aims to quantify whether simple MLPs can further enhance the already potent ability of PLMs to capture linguistic information. Specifically, we design a simple yet effective probing framework containing MLPs components based on BERT structure and conduct extensive experiments encompassing 10 probing tasks spanning three distinct linguistic levels. The experimental results demonstrate that MLPs can indeed enhance the comprehension of linguistic structure by PLMs. Our research provides interpretable and valuable insights into crafting variations of PLMs utilizing MLPs for tasks that emphasize diverse linguistic structures.

cs.CL↗

arXiv2023

Rethinking Relation Classification with Graph Meaning Representations

In the field of natural language understanding, the intersection of neural models and graph meaning representations (GMRs) remains a compelling area of research. Despite the growing interest, a critical gap persists in understanding the exact influence of GMRs, particularly concerning relation extraction tasks. Addressing this, we introduce DAGNN-plus, a simple and parameter-efficient neural architecture designed to decouple contextual representation learning from structural information propagation. Coupled with various sequence encoders and GMRs, this architecture provides a foundation for systematic experimentation on two English and two Chinese datasets. Our empirical analysis utilizes four different graph formalisms and nine parsers. The results yield a nuanced understanding of GMRs, showing improvements in three out of the four datasets, particularly favoring English over Chinese due to highly accurate parsers. Interestingly, GMRs appear less effective in literary-domain datasets compared to general-domain datasets. These findings lay the groundwork for better-informed design of GMRs and parsers to improve relation classification, which is expected to tangibly impact the future trajectory of natural language understanding research.

cs.CL↗