arXiv subjects

William Dawson

Publications and source records attributed to William Dawson.

At least 19 recordsLinked to original sources

arXiv2026

Band Structure Modulation of ZrO2 Nanoparticles for Control of CO Adsorption Properties: A Combined Density Functional Theory - Density Functional Tight Binding Study

We present a combined density functional theory (DFT) and density functional tight binding (DFTB) study of zirconia (ZrO2) nanoparticles of experimentally relevant sizes of several nanometers and their interactions with the CO molecule. A hybrid DFTB - Force Field (DFTB-FF) framework is developed, whereby band structure calculations rely on an existing Slater-Koster framework, while the accuracy of structural optimization and adsorption properties is controlled by the introduction of classical long-range interatomic potentials into DFTB instead of the traditional repulsive potentials. Additionally, coordination-dependent Zr-C potentials are introduced to account for the distinct local chemical environments of bulk-like facet sites and under-coordinated tip and edge sites, thereby improving the description of CO adsorption. This hybrid DFTB-FF approach substantially improves the robustness of geometry optimization and provides a practical strategy for extending the applicability of DFTB to complex oxide nanostructures. The calculations reveal that termination stoichiometry can be used to engineer intrinsic, p-type, or n-type electronic structures and thereby tune the adsorption activity of zirconia nanoparticles. While stoichiometric nanoparticles do not activate the C-O bond, low-coordinated sites in Zr-rich (n-type) nanoparticles exhibit chemisorption accompanied by charge donation into a CO antibonding LUMO-derived orbital, resulting in C-O bond activation. These results demonstrate that stoichiometry-controlled electronic structure and under-coordinated surface sites introduced by nanostructuring play a key role in governing the adsorption strength and reactivity of zirconia nanoparticles.

cond-mat.mtrl-sci↗

arXiv2026

Toward Exascale AI for Science: A Scalable AI Skill for Autonomous Microkinetics Discovery

We present a scalable AI-driven framework that advances autonomous scientific discovery by combining agentic workflow automation, high-performance computing, and scientific surrogate models. Using microkinetics discovery as a testbed, the work demonstrates how AI can reduce expert intervention, recover from failed simulations, and systematically evaluate surrogate model reliability. This study shows how AI skills can transform complex domain workflows into robust, scalable capabilities for next-generation materials research.

cs.CE↗

arXiv2026

From Knowledge to Action: Outcomes of the 2025 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

cond-mat.mtrl-sci↗

arXiv2026

LARA: Validation-Driven Agentic Supercomputer Workflows for Atomistic Modeling

Large language models (LLMs) and agentic systems have recently demonstrated potential for automating scientific workflows, including atomistic simulations. However, their deployment in high-performance computing (HPC) environments remains limited by the lack of mechanisms ensuring correctness, reproducibility, and safe interaction with computational resources. Generated workflows suffer from inconsistencies, incorrect API usage, or invalid physical configurations - leading to failed or unreliable simulations. In this work, we introduce LARA-HPC, a validation-driven agentic framework to enable reliable workflow generation for atomistic modeling on HPC systems. Our approach is based on three key components: (i) a controlled execution layer that mediates all interactions with HPC resources; (ii) simulation-native validation through dry-run capabilities, enabling execution-level verification without incurring resource cost; and (iii) a multi-phase agentic pipeline combining retrieval-augmented generation and iterative refinement. We demonstrate the effectiveness of this approach performing an end-to-end atomistic simulation workflow on HPC by applying LARA-HPC to Density Functional Theory simulations. The results show that validation-driven generation significantly improves robustness and enables iterative correction of both syntactic and physical inconsistencies. More broadly, this work advocates for a shift from generation-first to validation-first paradigms in Artificial Intelligence (AI) assisted scientific computing. We argue that the future task of the computational physics community is to develop domain specific agentic systems based on structured tooling to realize an HPC enabled co-piloted research ecosystem.

physics.comp-ph↗

arXiv2026

Coupling Quantum Mechanical Modeling and Molecular Dynamics on Heterogeneous Supercomputers for Studying Distal Mutation Effects on Drug Binding in HIV-1

Predicting how protein mutations affect drug binding remains a major challenge, particularly when the mutations are distal from the binding site. In this study, we introduce a coupled simulation workflow that combines long-time-scale molecular dynamics (MD) with high-throughput quantum mechanical (QM) analysis to reveal the electronic structure signatures of mutation induced drug resistance in the HIV-1 protease. Our workflow leverages GPU-accelerated MD to generate conformational ensembles, and performs in-operando linear-scaling density functional theory (DFT) calculations on selected frames parallelized on a coupled partition of CPU nodes. This design enables efficient, massively parallel quantum analysis of protein-ligand complexes at atomic resolution. Using this approach, we investigate resistance to the antiviral Darunavir in a multi-mutant HIV-1 protease variant. By mapping the network of electronic interactions across the binding interface, our results highlight the critical role of conformational sampling and quantum insight in understanding distal mutation effects, and demonstrate a scalable computational strategy for studying complex biophysical mechanisms of drug resistance. We argue that such kind of analysis may pave the way for designing inhibitors that maintain binding stability against systemic, mutation-induced destabilization.

physics.chem-ph↗

arXiv2025

Roadmap on Advancements of the FHI-aims Software Package

Electronic-structure theory is the foundation of the description of materials including multiscale modeling of their properties and functions. Obviously, without sufficient accuracy at the base, reliable predictions are unlikely at any level that follows. The software package FHI-aims has proven to be a game changer for accurate free-energy calculations because of its scalability, numerical precision, and its efficient handling of density functional theory (DFT) with hybrid functionals and van der Waals interactions. It treats molecules, clusters, and extended systems (solids and liquids) on an equal footing. Besides DFT, FHI-aims also includes quantum-chemistry methods, descriptions for excited states and vibrations, and calculations of various types of transport. Recent advancements address the integration of FHI-aims into an increasing number of workflows and various artificial intelligence (AI) methods. This Roadmap describes the state-of-the-art of FHI-aims and advancements that are currently ongoing or planned.

cond-mat.mtrl-sci↗

arXiv2025

A Scalable Diagonalization Framework for Tensor-Product Bitstring Selected Configuration Interaction

Selected configuration interaction (SCI) methods are effective for treating strongly correlated electronic systems, yet their scalability has long been limited by implementations that replicate the configuration interaction (CI) vector across processes, leading to severe memory bottlenecks. Here, we present a fully distributed diagonalization framework tailored for extremely large selected determinant spaces, directly addressing this major scalability bottleneck of modern SCI methods. The method is grounded in a tensor-product bitstring (TPB) representation, in which determinants are organized through a TPB structure constructed from selected alpha- and beta-bitstrings, and is referred to as tensor-product bitstring SCI (TBSCI). An efficient TBSCI eigensolver is developed based on a novel bitstring-based Hamiltonian evaluation algorithm together with a suite of MPI communication strategies designed to improve parallel efficiency. Large-scale full configuration interaction (FCI) benchmarks, employed as communication-intensive stress tests, demonstrate that the implemented TBSCI eigensolver continues to reduce the wall time for distributed diagonalization of 2.6 trillion determinants, reaching 54,000 nodes (more than 2.5 million cores) on supercomputer Fugaku. Beyond scalability, we investigate the structural compactness of the TPB representation and show that selecting alpha- and beta-bitstrings according to their collective weights in a reference SCI wavefunction yields TPB-based wavefunctions approaching the FCI limit while using only a small fraction of determinants. These results establish TBSCI as a scalable SCI methodology and provide evidence for the intrinsic compactness of the TPB representation.

physics.chem-ph↗

arXiv2025

Solvers for Large-Scale Electronic Structure Theory: ELPA and ELSI

In this contribution, we give an overview of the ELPA library and ELSI interface, which are crucial elements for large-scale electronic structure calculations in FHI-aims. ELPA is a key solver library that provides efficient solutions for both standard and generalized eigenproblems, which are central to the Kohn-Sham formalism in density functional theory (DFT). It supports CPU and GPU architectures, with full support for NVIDIA and AMD GPUs, and ongoing development for Intel GPUs. Here we also report the results of recent optimizations, leading to significant improvements in GPU performance for the generalized eigenproblem. ELSI is an open-source software interface layer that creates a well-defined connection between "user" electronic structure codes and "solver" libraries for the Kohn-Sham problem, abstracting the step between Hamilton and overlap matrices (as input to ELSI and the respective solvers) and eigenvalues and eigenvectors or density matrix solutions (as output to be passed back to the "user" electronic structure code). In addition to ELPA, ELSI supports solvers including LAPACK and MAGMA, the PEXSI and NTPoly libraries (which bypass an explicit eigenvalue solution), and several others.

cond-mat.mtrl-sci↗

arXiv2024

Investigating the mixing between two black hole populations in LIGO-Virgo-KAGRA GWTC-3

We introduce a population model to analyze the mixing between hypothesised power-law and $\sim 35 M_\odot$ Gaussian bump black hole populations in the latest gravitational wave catalog, GWTC-3, estimating their co-location and separation. We find a relatively low level of mixing, $3.1^{+5.0}_{-3.1}\%$, between the power-law and Gaussian populations, compared to the percentage of mergers containing two Gaussian bump black holes, $5.0^{+3.2}_{-1.7}\%$. Our analysis indicates that black holes within the Gaussian bump are generally separate from the power-law population, with only a minor fraction engaging in mixing and contributing to the $\mathcal{M} \sim 14 M_\odot$ peak in the chirp mass. This leads us to identify a distinct population of Binary Gaussian Black Holes (BGBHs) that arise from mergers within the Gaussian bump. We suggest that current theories for the formation of the massive $35 M_\odot$ Gaussian bump population may need to reevaluate the underlying mechanisms that drive the preference for BGBHs.

astro-ph.HE↗

arXiv2024

Reducing Numerical Precision Requirements in Quantum Chemistry Calculations

The abundant demand for deep learning compute resources has created a renaissance in low precision hardware. Going forward, it will be essential for simulation software to run on this new generation of machines without sacrificing scientific fidelity. In this paper, we examine the precision requirements of a representative kernel from quantum chemistry calculations: calculation of the single particle density matrix from a given mean field Hamiltonian (i.e. Hartree-Fock or Density Functional Theory) represented in an LCAO basis. We find that double precision affords an unnecessarily high level of precision, leading to optimization opportunities. We show how an approximation built from an error-free matrix multiplication transformation can be used to potentially accelerate this kernel on future hardware. Our results provide a road map for adapting quantum chemistry software for the next generation of High Performance Computing platforms.

physics.chem-ph↗

arXiv2023

Positivity Preserving Density Matrix Minimization at Finite Temperatures via Square Root

We present a Wave Operator Minimization (WOM) method for calculating the Fermi-Dirac density matrix for electronic structure problems at finite temperature while preserving physicality by construction using the wave operator, i.e., the square root of the density matrix. WOM models cooling a state initially at infinite temperature down to the desired finite temperature. We consider both the grand canonical (constant chemical potential) and canonical (constant number of electrons) ensembles. Additionally, we show that the number of steps required for convergence is independent of the number of atoms in the system. We hope that the discussion and results presented in this article reinvigorates interest in density matrix minimization methods.

quant-ph↗

arXiv2023

Exploratory Data Science on Supercomputers for Quantum Mechanical Calculations

Literate programming - the bringing together of program code and natural language narratives - has become a ubiquitous approach in the realm of data science. This methodology is appealing as well for the domain of Density Functional Theory (DFT) calculations, particularly for interactively developing new methodologies and workflows. However, effective use of literate programming is hampered by old programming paradigms and the difficulties associated with using High Performance Computing (HPC) resources. Here we present two Python libraries that aim to remove these hurdles. First, we describe the PyBigDFT library, which can be used to setup materials or molecular systems and provides high-level access to the wavelet based BigDFT code. We then present the related remotemanager library, which is able to serialize and execute arbitrary Python functions on remote supercomputers. We show how together these libraries enable transparent access to HPC based DFT calculations and can serve as building blocks for rapid prototyping and data exploration.

physics.chem-ph↗

arXiv2023

Disentangling the Black Hole Mass Spectrum with Photometric Microlensing Surveys

From the formation mechanisms of stars and compact objects to nuclear physics, modern astronomy frequently leverages surveys to understand populations of objects to answer fundamental questions. The population of dark and isolated compact objects in the Galaxy contains critical information related to many of these topics, but is only practically accessible via gravitational microlensing. However, photometric microlensing observables are degenerate for different types of lenses, and one can seldom classify an event as involving either a compact object or stellar lens on its own. To address this difficulty, we apply a Bayesian framework that treats lens type probabilistically and jointly with a lens population model. This method allows lens population characteristics to be inferred despite intrinsic uncertainty in the lens-class of any single event. We investigate this method's effectiveness on a simulated ground-based photometric survey in the context of characterizing a hypothetical population of primordial black holes (PBHs) with an average mass of $30 M_{\odot}$. On simulated data, our method outperforms current black hole (BH) lens identification pipelines and characterizes different subpopulations of lenses while jointly constraining the PBH contribution to dark matter to ${\approx}25$\%. Key to robust inference, our method can marginalize over population model uncertainty. We find the lower mass cutoff for stellar origin BHs, a key observable in understanding the BH mass gap, particularly difficult to infer in our simulations. This work lays the foundation for cutting-edge PBH abundance constraints to be extracted from current photometric microlensing surveys.

astro-ph.IM↗

arXiv2023

Roman CCS White Paper: Characterizing the Galactic population of isolated black holes

Although there are estimated to be 100 million isolated black holes (BHs) in the Milky Way, only one has been found so far, resulting in significant uncertainty about their properties. The Galactic Bulge Time Domain Survey provides the only opportunity in the coming decades to grow this catalog by order(s) of magnitude. This can be achieved if 1) Roman's astrometric potential is fully realized in the observation strategy and software pipelines, 2) Roman's observational gaps of the Bulge are minimized, and 3) observations with ground-based facilities are taken of the Bulge to fill in gaps during non-Bulge seasons. A large sample of isolated BHs will enable a broad range of astrophysical questions to be answered, such as massive stellar evolution, origin of gravitational wave sources, supernova physics, and the growth of supermassive BHs, maximizing Roman's scientific return.

astro-ph.IM↗

arXiv2023

Complexity Reduction in Density Functional Theory: Locality in Space and Energy

We present recent developments of the NTChem program for performing large scale hybrid Density Functional Theory calculations on the supercomputer Fugaku. We combine these developments with our recently proposed Complexity Reduction Framework to assess the impact of basis set and functional choice on its measures of fragment quality and interaction. We further exploit the all electron representation to study system fragmentation in various energy envelopes. Building off this analysis, we propose two algorithms for computing the orbital energies of the Kohn-Sham Hamiltonian. We demonstrate these algorithms can efficiently be applied to systems composed of thousands of atoms and as an analysis tool that reveals the origin of spectral properties.

physics.chem-ph↗

arXiv2022

Roadmap on Electronic Structure Codes in the Exascale Era

Electronic structure calculations have been instrumental in providing many important insights into a range of physical and chemical properties of various molecular and solid-state systems. Their importance to various fields, including materials science, chemical sciences, computational chemistry and device physics, is underscored by the large fraction of available public supercomputing resources devoted to these calculations. As we enter the exascale era, exciting new opportunities to increase simulation numbers, sizes, and accuracies present themselves. In order to realize these promises, the community of electronic structure software developers will however first have to tackle a number of challenges pertaining to the efficient use of new architectures that will rely heavily on massive parallelism and hardware accelerators. This roadmap provides a broad overview of the state-of-the-art in electronic structure calculations and of the various new directions being pursued by the community. It covers 14 electronic structure codes, presenting their current status, their development priorities over the next five years, and their plans towards tackling the challenges and leveraging the opportunities presented by the advent of exascale computing.

cond-mat.mtrl-sci↗

arXiv2022

Probing Disorder in 2CzPN using Core and Valence States

Molecules which exhibit thermally activated delayed fluorescence (TADF) show great promise for use in efficient, environmentally-friendly OLEDs, and thus the design of new TADF emitters is an active area of research. However, when used in devices, they are typically in the form of disordered thin films, where both the external molecular environment and thermally-induced internal variations in parameters such as the torsion angle can strongly influence their electronic structure. In this work, we use density functional theory and X-ray photoelectron spectroscopy to investigate the impact of disorder on both core and valence states in the TADF emitter 2CzPN. By simulating gas phase molecules displaying varying levels of disorder, we assess the relative sensitivity of the different states to factors such as varying torsion angle. The theoretical results for both core and valence states show good agreement with experiment, thereby also highlighting the advantages of our approach for interpreting experimental spectra of large aromatic molecules, which are too complex to interpret based solely on experimental data.

physics.chem-ph↗

arXiv2020

ELSI -- An Open Infrastructure for Electronic Structure Solvers

Routine applications of electronic structure theory to molecules and periodic systems need to compute the electron density from given Hamiltonian and, in case of non-orthogonal basis sets, overlap matrices. System sizes can range from few to thousands or, in some examples, millions of atoms. Different discretization schemes (basis sets) and different system geometries (finite non-periodic vs. infinite periodic boundary conditions) yield matrices with different structures. The ELectronic Structure Infrastructure (ELSI) project provides an open-source software interface to facilitate the implementation and optimal use of high-performance solver libraries covering cubic scaling eigensolvers, linear scaling density-matrix-based algorithms, and other reduced scaling methods in between. In this paper, we present recent improvements and developments inside ELSI, mainly covering (1) new solvers connected to the interface, (2) matrix layout and communication adapted for parallel calculations of periodic and/or spin-polarized systems, (3) routines for density matrix extrapolation in geometry optimization and molecular dynamics calculations, and (4) general utilities such as parallel matrix I/O and JSON output. The ELSI interface has been integrated into four electronic structure code projects (DFTB+, DGDFT, FHI-aims, SIESTA), allowing us to rigorously benchmark the performance of the solvers on an equal footing. Based on results of a systematic set of large-scale benchmarks performed with Kohn-Sham density-functional theory and density-functional tight-binding theory, we identify factors that strongly affect the efficiency of the solvers, and propose a decision layer that assists with the solver selection process. Finally, we describe a reverse communication interface encoding matrix-free iterative solver strategies that are amenable, e.g., for use with planewave basis sets.

physics.comp-ph↗