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William Pettersson

Publications and source records attributed to William Pettersson.

16 recordsLinked to original sources

Reachability in temporal graphs under perturbation

Reachability and other path-based measures on temporal graphs can be used to understand spread of infection, information, and people in modelled systems. Due to delays and errors in reporting, temporal graphs derived from data are unlikely to perfectly reflect reality, especially with respect to the precise times at which edges appear. To reflect this uncertainty, we consider a model in which some number $ζ$ of edge appearances may have their timestamps perturbed by $\pmδ$ for some $δ$. Within this model, we investigate temporal reachability and consider the problem of determining the maximum number of vertices any vertex can reach under these perturbations. We show that this problem is intractable in general but is efficiently solvable when $ζ$ is sufficiently large. We also give algorithms which solve this problem in several restricted settings. We complement this with some contrasting results concerning the complexity of related temporal eccentricity problems under perturbation.

cs.DM

Operational research approaches and mathematical models for kidney exchange: A literature survey and empirical evaluation

Kidney exchange is a transplant modality that has provided new opportunities for living kidney donation in many countries around the world since 1991. It has been extensively studied from an Operational Research (OR) perspective since 2004. This article provides a comprehensive literature survey on OR approaches to fundamental computational problems associated with kidney exchange over the last two decades. We also summarise the key integer linear programming (ILP) models for kidney exchange, showing how to model optimisation problems involving only cycles and chains separately. This allows new combined ILP models, not previously presented, to be obtained by amalgamating cycle and chain models. We present a comprehensive empirical evaluation involving all combined models from this paper in addition to bespoke software packages from the literature involving advanced techniques. This focuses primarily on computation times for 49 methods applied to 4,320 problem instances of varying sizes that reflect the characteristics of real kidney exchange datasets, corresponding to over 200,000 algorithm executions. We have made our implementations of all cycle and chain models described in this paper, together with all instances used for the experiments, and a web application to visualise our experimental results, publicly available.

cs.DS

Tangled Paths: A Random Graph Model from Mallows Permutations

We introduce the random graph $\mathcal{P}(n,q)$ which results from taking the union of two paths of length $n\geq 1$, where the vertices of one of the paths have been relabelled according to a Mallows permutation with parameter $0<q(n)\leq 1$. This random graph model, the tangled path, goes through an evolution: if $q$ is close to $0$ the graph bears resemblance to a path, and as $q$ tends to $1$ it becomes an expander. In an effort to understand the evolution of $\mathcal{P}(n,q)$ we determine the treewidth and cutwidth of $\mathcal{P}(n,q)$ up to log factors for all $q$. We also show that the property of having a separator of size one has a sharp threshold. In addition, we prove bounds on the diameter, and vertex isoperimetric number for specific values of $q$.

math.CO

Directed branch-width: A directed analogue of tree-width

Gurski and Wanke showed that a graph class C has bounded tree-width if and only if its associated class of directed line graphs has bounded clique-width. Inevitably -- asking whether this relationship lifts to directed graphs -- we introduce a new digraph width measure: we obtain it by investigating digraphs whose directed line graphs have bounded cliquewidth. Thus, to generalize Gurski and Wanke's aforementioned result, we introduce a natural generalization of branch-width to digraphs and we name it accordingly. Directed branch-width is a genuinely directed width-measure insofar as it cannot be used to bound the value of the underlying undirected tree-width. Despite this, the two measures are still closely related: the directed branch-width of a digraph D can differ from the branch-width of its underlying undirected graph only at sources and sinks. This relationship allows us to extend a range of algorithmic results from directed graphs with bounded underlying treewidth to the strictly larger class of digraphs having bounded directed branch-width.

math.CO

Cops and Robbers on Multi-Layer Graphs

We generalise the popular cops and robbers game to multi-layer graphs, where each cop and the robber are restricted to a single layer (or set of edges). We show that initial intuition about the best way to allocate cops to layers is not always correct, and prove that the multi-layer cop number is neither bounded from above nor below by any increasing function of the cop numbers of the individual layers. We determine that it is NP-hard to decide if $k$ cops are sufficient to catch the robber, even if every cop layer is a tree and a set of isolated vertices. However, we give a polynomial time algorithm to determine if $k$ cops can win when the robber layer is a tree. Additionally, we investigate a question of worst-case divisions of a simple graph into layers: given a simple graph $G$, what is the maximum number of cops required to catch a robber over all multi-layer graphs where each edge of $G$ is in at least one layer and all layers are connected? For cliques, suitably dense random graphs, and graphs of bounded treewidth, we determine this parameter up to multiplicative constants. Lastly we consider a multi-layer variant of Meyniel's conjecture, and show the existence of an infinite family of graphs whose multi-layer cop number is bounded from below by a constant times $n / \log n$, where $n$ is the number of vertices in the graph.

math.CO

Bounds on the Twin-Width of Product Graphs

Twin-width is a graph width parameter recently introduced by Bonnet, Kim, Thomassé & Watrigant. Given two graphs $G$ and $H$ and a graph product $\star$, we address the question: is the twin-width of $G\star H$ bounded by a function of the twin-widths of $G$ and $H$ and their maximum degrees? It is known that a bound of this type holds for strong products (Bonnet, Geniet, Kim, Thomassé & Watrigant; SODA 2021). We show that bounds of the same form hold for Cartesian, tensor/direct, corona, rooted, replacement, and zig-zag products. For the lexicographical product it is known that the twin-width of the product of two graphs is exactly the maximum of the twin-widths of the individual graphs (Bonnet, Kim, Reinald, Thomassé & Watrigant; IPEC 2021). In contrast, for the modular product we show that no bound can hold. In addition, we provide examples showing many of our bounds are tight, and give improved bounds for certain classes of graphs.

math.CO

The complexity of finding and enumerating optimal subgraphs to represent spatial correlation

Understanding spatial correlation is vital in many fields including epidemiology and social science. Lee, Meeks and Pettersson (Stat. Comput. 2021) recently demonstrated that improved inference for areal unit count data can be achieved by carrying out modifications to a graph representing spatial correlations; specifically, they delete edges of the planar graph derived from border-sharing between geographic regions in order to maximise a specific objective function. In this paper we address the computational complexity of the associated graph optimisation problem. We demonstrate that this problem cannot be solved in polynomial time unless P = NP; we further show intractability for two simpler variants of the problem. We follow these results with two parameterised algorithms that exactly solve the problem. Both of these solve not only the decision problem, but also enumerate all solutions with polynomial time precalculation, delay, and postcalculation time in respective restricted settings. For this problem, efficient enumeration allows the uncertainty in the spatial correlation to be utilised in the modelling. The first enumeration algorithm utilises dynamic programming on a tree decomposition, and has polynomial time precalculation and linear delay if both the treewidth and maximum degree are bounded. The second algorithm is restricted to problem instances with maximum degree three, as may arise from triangulations of planar surfaces, but can output all solutions with FPT precalculation time and linear delay when the maximum number of edges that can be removed is taken as the parameter.

cs.DS

Multi-Objective Mixed Integer Programming: An Objective Space Algorithm

This paper introduces the first objective space algorithm which can exactly find all supported and non-supported non-dominated solutions to a mixed-integer multi-objective linear program with an arbitrary number of objective functions. This algorithm is presented in three phases. First it builds up a super-set which contains the Pareto front. This super-set is then modified to not contain any intersecting polytopes. Once this is achieved, the algorithm efficiently calculates which portions of the super-set are not part of the Pareto front and removes them, leaving exactly the Pareto front.

math.OC

Mathematical models for stable matching problems with ties and incomplete lists

We present new integer linear programming (ILP) models for NP-hard optimisation problems in instances of the Stable Marriage problem with Ties and Incomplete lists (SMTI) and its many-to-one generalisation, the Hospitals / Residents problem with Ties (HRT). These models can be used to efficiently solve these optimisation problems when applied to (i) instances derived from real-world applications, and (ii) larger instances that are randomly-generated. In the case of SMTI, we consider instances arising from the pairing of children with adoptive families, where preferences are obtained from a quality measure of each possible pairing of child to family. In this case we seek a maximum weight stable matching. We present new algorithms for preprocessing instances of SMTI with ties on both sides, as well as new ILP models. Algorithms based on existing state-of-the-art models only solve 6 of our 22 real-world instances within an hour per instance, and our new models solve all 22 instances within a mean runtime of 60 seconds. For HRT, we consider instances derived from the problem of assigning junior doctors to foundation posts in Scottish hospitals. Here we seek a maximum size stable matching. We show how to extend our models for SMTI to the HRT case. For the real instances, we reduce the mean runtime from an average of 144 seconds when using state-of-the-art methods, to 3 seconds when using our new ILP-based algorithms. We also show that our models outperform considerably state-of-the-art models on larger randomly-generated instances of SMTI and HRT.

cs.DS

Multi-objective integer programming: Synergistic parallel approaches

Exactly solving multi-objective integer programming (MOIP) problems is often a very time consuming process, especially for large and complex problems. Parallel computing has the potential to significantly reduce the time taken to solve such problems, but only if suitable algorithms are used. The first of our new algorithms follows a simple technique that demonstrates impressive performance for its design. We then go on to introduce new theory for developing more efficient parallel algorithms. The theory utilises elements of the symmetric group to apply a permutation to the objective functions to assign different workloads, and applies to algorithms that order the objective functions lexicographically. As a result, information and updated bounds can be shared in real time, creating a synergy between threads. We design and implement two algorithms that take advantage of such theory. To properly analyse the running time of our three algorithms, we compare them against two existing algorithms from the literature, and against using multiple threads within our chosen IP solver, CPLEX. This survey of six different parallel algorithms, the first of its kind, demonstrates the advantages of parallel computing. Across all problem types tested, our new algorithms are on par with existing algorithms on smaller cases and massively outperform the competition on larger cases. These new algorithms, and freely available implementations, allows the investigation of complex MOIP problems with four or more objectives.

math.OC

The parameterized complexity of finding a 2-sphere in a simplicial complex

We consider the problem of finding a subcomplex K' of a simplicial complex K such that K' is homeomorphic to the 2-dimensional sphere, S^2. We study two variants of this problem. The first asks if there exists such a K' with at most k triangles, and we show that this variant is W[1]-hard and, assuming ETH, admits no O(n^{o(sqrt(k))}) time algorithm. We also give an algorithm that is tight with regards to this lower bound. The second problem is the dual of the first, and asks if K' can be found by removing at most k triangles from K. This variant has an immediate O(3^k poly(|K|)) time algorithm, and we show that it admits a polynomial kernelization to O(k^2) triangles, as well as a polynomial compression to a weighted version with bit-size O(k log k).

cs.DS

Efficient Projection Partitioning for parallel multi-objective integer optimisation

This paper introduces a new method of partitioning the solution space of a multi-objective optimisation problem for parallel processing, called Efficient Projection Partitioning. This method projects solutions down into a single dimension, greatly reducing the cost of partitioning the search space. We test EPP on a variety of randomly generated multi-objective combinatorial optimisation problems. The results are compared with the state of the art in parallel partitioning, and we show that in all scenarios tested, our new algorithm performs significantly better. Our proposed method allows the generation of non-dominated sets of larger problems with more decision variables or objective functions through the use of highly parallel computational infrastructure. Source code is provided to allow others to utilise, build upon and improve the algorithm

math.OC

A parallel approach to bi-objective integer programming

To obtain a better understanding of the trade-offs between various objectives, Bi-Objective Integer Programming (BOIP) algorithms calculate the set of all non-dominated vectors and present these as the solution to a BOIP problem. Historically, these algorithms have been compared in terms of the number of single-objective IPs solved and total CPU time taken to produce the solution to a problem. This is equitable, as researchers can often have access to widely differing amounts of computing power. However, the real world has recently seen a large uptake of multi-core processors in computers, laptops, tablets and even mobile phones. With this in mind, we look at how to best utilise parallel processing to improve the elapsed time of optimisation algorithms. We present two methods of parallelising the recursive algorithm presented by Ozlen, Burton and MacRae. Both new methods utilise two threads and improve running times. One of the new methods, the Meeting algorithm, halves running time to achieve near-perfect parallelisation. The results are compared with the efficiency of parallelisation within the commercial IP solver IBM ILOG CPLEX, and the new methods are both shown to perform better.

math.OC

An edge-based framework for enumerating 3-manifold triangulations

A typical census of 3-manifolds contains all manifolds (under various constraints) that can be triangulated with at most n tetrahedra. Al- though censuses are useful resources for mathematicians, constructing them is difficult: the best algorithms to date have not gone beyond n = 12. The underlying algorithms essentially (i) enumerate all relevant 4-regular multigraphs on n nodes, and then (ii) for each multigraph G they enumerate possible 3-manifold triangulations with G as their dual 1-skeleton, of which there could be exponentially many. In practice, a small number of multigraphs often dominate the running times of census algorithms: for example, in a typical census on 10 tetrahedra, almost half of the running time is spent on just 0.3% of the graphs. Here we present a new algorithm for stage (ii), which is the computational bottleneck in this process. The key idea is to build triangulations by recursively constructing neighbourhoods of edges, in contrast to traditional algorithms which recursively glue together pairs of tetrahedron faces. We implement this algorithm, and find experimentally that whilst the overall performance is mixed, the new algorithm runs significantly faster on those "pathological" multigraphs for which existing methods are extremely slow. In this way the old and new algorithms complement one another, and together can yield significant performance improvements over either method alone.

math.GT

Fixed parameter tractable algorithms in combinatorial topology

To enumerate 3-manifold triangulations with a given property, one typically begins with a set of potential face pairing graphs (also known as dual 1-skeletons), and then attempts to flesh each graph out into full triangulations using an exponential-time enumeration. However, asymptotically most graphs do not result in any 3-manifold triangulation, which leads to significant "wasted time" in topological enumeration algorithms. Here we give a new algorithm to determine whether a given face pairing graph supports any 3-manifold triangulation, and show this to be fixed parameter tractable in the treewidth of the graph. We extend this result to a "meta-theorem" by defining a broad class of properties of triangulations, each with a corresponding fixed parameter tractable existence algorithm. We explicitly implement this algorithm in the most generic setting, and we identify heuristics that in practice are seen to mitigate the large constants that so often occur in parameterised complexity, highlighting the practicality of our techniques.

math.GT

Decompositions of complete graphs into cycles of arbitrary lengths

We show that the complete graph on $n$ vertices can be decomposed into $t$ cycles of specified lengths $m_1,\ldots,m_t$ if and only if $n$ is odd, $3\leq m_i\leq n$ for $i=1,\ldots,t$, and $m_1+\cdots+m_t=\binom n2$. We also show that the complete graph on $n$ vertices can be decomposed into a perfect matching and $t$ cycles of specified lengths $m_1,\ldots,m_t$ if and only if $n$ is even, $3\leq m_i\leq n$ for $i=1,\ldots,t$, and $m_1+\ldots+m_t=\binom n2-\frac n2$.

math.CO