Searcharxiv⌕ Search

arXiv subjects

William R. P. Denault

Publications and source records attributed to William R. P. Denault.

2 recordsLinked to original sources

Nash: Neural Adaptive Shrinkage for Structured High-Dimensional Regression

Sparse linear regression is a fundamental tool in data analysis. However, traditional approaches often fall short when covariates exhibit structure or arise from heterogeneous sources. In biomedical applications, covariates may stem from distinct modalities or be structured according to an underlying graph. We introduce \textit{Neural Adaptive Shrinkage} (Nash), a unified framework that integrates covariate-specific side information into sparse regression via neural networks. Nash adaptively modulates penalties on a per-covariate basis, learning to tailor regularization without cross-validation. We use a \textit{split variational empirical Bayes} algorithm that decouples prior learning from posterior inference, reducing the M-step from $\mathcal{O}(p) $ neural-network passes per sweep to a single batched pass, a \textit{74 to 106x wall-clock speedup} over previously proposed coordinate ascent CAVI for p between $10^2$ and $10^4$. Experiments on real data demonstrate that Nash improves accuracy and adaptability over existing methods.

stat.ML↗

Covariate-moderated Empirical Bayes Matrix Factorization

Matrix factorization is a fundamental method in statistics and machine learning for inferring and summarizing structure in multivariate data. Modern data sets often come with "side information" of various forms (images, text, graphs) that can be leveraged to improve estimation of the underlying structure. However, existing methods that leverage side information are limited in the types of data they can incorporate, and they assume specific parametric models. Here, we introduce a novel method for this problem, covariate-moderated empirical Bayes matrix factorization (cEBMF). cEBMF is a modular framework that accepts any type of side information that is processable by a probabilistic model or a neural network. The cEBMF framework can accommodate different assumptions and constraints on the factors through the use of different priors, and it adapts these priors to the data. We demonstrate the benefits of cEBMF in simulations and in analyses of spatial transcriptomics and collaborative filtering data. A PyTorch-based implementation of cEBMF with flexible priors is available at https://github.com/william-denault/cebmf_torch.

stat.ME↗