arXiv subjects

William W. Cohen

Publications and source records attributed to William W. Cohen.

At least 55 records · Page 3Linked to original sources

arXiv2021

MATE: Multi-view Attention for Table Transformer Efficiency

This work presents a sparse-attention Transformer architecture for modeling documents that contain large tables. Tables are ubiquitous on the web, and are rich in information. However, more than 20% of relational tables on the web have 20 or more rows (Cafarella et al., 2008), and these large tables present a challenge for current Transformer models, which are typically limited to 512 tokens. Here we propose MATE, a novel Transformer architecture designed to model the structure of web tables. MATE uses sparse attention in a way that allows heads to efficiently attend to either rows or columns in a table. This architecture scales linearly with respect to speed and memory, and can handle documents containing more than 8000 tokens with current accelerators. MATE also has a more appropriate inductive bias for tabular data, and sets a new state-of-the-art for three table reasoning datasets. For HybridQA (Chen et al., 2020b), a dataset that involves large documents containing tables, we improve the best prior result by 19 points.

cs.CL↗

arXiv2021

Reasoning Over Virtual Knowledge Bases With Open Predicate Relations

We present the Open Predicate Query Language (OPQL); a method for constructing a virtual KB (VKB) trained entirely from text. Large Knowledge Bases (KBs) are indispensable for a wide-range of industry applications such as question answering and recommendation. Typically, KBs encode world knowledge in a structured, readily accessible form derived from laborious human annotation efforts. Unfortunately, while they are extremely high precision, KBs are inevitably highly incomplete and automated methods for enriching them are far too inaccurate. Instead, OPQL constructs a VKB by encoding and indexing a set of relation mentions in a way that naturally enables reasoning and can be trained without any structured supervision. We demonstrate that OPQL outperforms prior VKB methods on two different KB reasoning tasks and, additionally, can be used as an external memory integrated into a language model (OPQL-LM) leading to improvements on two open-domain question answering tasks.

cs.AI↗

arXiv2021

Differentiable Open-Ended Commonsense Reasoning

Current commonsense reasoning research focuses on developing models that use commonsense knowledge to answer multiple-choice questions. However, systems designed to answer multiple-choice questions may not be useful in applications that do not provide a small list of candidate answers to choose from. As a step towards making commonsense reasoning research more realistic, we propose to study open-ended commonsense reasoning (OpenCSR) -- the task of answering a commonsense question without any pre-defined choices -- using as a resource only a corpus of commonsense facts written in natural language. OpenCSR is challenging due to a large decision space, and because many questions require implicit multi-hop reasoning. As an approach to OpenCSR, we propose DrFact, an efficient Differentiable model for multi-hop Reasoning over knowledge Facts. To evaluate OpenCSR methods, we adapt several popular commonsense reasoning benchmarks, and collect multiple new answers for each test question via crowd-sourcing. Experiments show that DrFact outperforms strong baseline methods by a large margin.

cs.CL↗

arXiv2021

Instance-based Transfer Learning for Multilingual Deep Retrieval

We focus on the problem of search in the multilingual setting. Examining the problems of next-sentence prediction and inverse cloze, we show that at large scale, instance-based transfer learning is surprisingly effective in the multilingual setting, leading to positive transfer on all of the 35 target languages and two tasks tested. We analyze this improvement and argue that the most natural explanation, namely direct vocabulary overlap between languages, only partially explains the performance gains: in fact, we demonstrate target-language improvement can occur after adding data from an auxiliary language even with no vocabulary in common with the target. This surprising result is due to the effect of transitive vocabulary overlaps between pairs of auxiliary and target languages.

cs.CL↗

arXiv2021

What's the best place for an AI conference, Vancouver or ______: Why completing comparative questions is difficult

Although large neural language models (LMs) like BERT can be finetuned to yield state-of-the-art results on many NLP tasks, it is often unclear what these models actually learn. Here we study using such LMs to fill in entities in human-authored comparative questions, like ``Which country is older, India or ______?'' -- i.e., we study the ability of neural LMs to ask (not answer) reasonable questions. We show that accuracy in this fill-in-the-blank task is well-correlated with human judgements of whether a question is reasonable, and that these models can be trained to achieve nearly human-level performance in completing comparative questions in three different subdomains. However, analysis shows that what they learn fails to model any sort of broad notion of which entities are semantically comparable or similar -- instead the trained models are very domain-specific, and performance is highly correlated with co-occurrences between specific entities observed in the training set. This is true both for models that are pretrained on general text corpora, as well as models trained on a large corpus of comparison questions. Our study thus reinforces recent results on the difficulty of making claims about a deep model's world knowledge or linguistic competence based on performance on specific benchmark problems. We make our evaluation datasets publicly available to foster future research on complex understanding and reasoning in such models at standards of human interaction.

cs.CL↗

arXiv2021

Open Question Answering over Tables and Text

In open question answering (QA), the answer to a question is produced by retrieving and then analyzing documents that might contain answers to the question. Most open QA systems have considered only retrieving information from unstructured text. Here we consider for the first time open QA over both tabular and textual data and present a new large-scale dataset Open Table-and-Text Question Answering (OTT-QA) to evaluate performance on this task. Most questions in OTT-QA require multi-hop inference across tabular data and unstructured text, and the evidence required to answer a question can be distributed in different ways over these two types of input, making evidence retrieval challenging -- our baseline model using an iterative retriever and BERT-based reader achieves an exact match score less than 10%. We then propose two novel techniques to address the challenge of retrieving and aggregating evidence for OTT-QA. The first technique is to use "early fusion" to group multiple highly relevant tabular and textual units into a fused block, which provides more context for the retriever to search for. The second technique is to use a cross-block reader to model the cross-dependency between multiple retrieved evidence with global-local sparse attention. Combining these two techniques improves the score significantly, to above 27%.

cs.CL↗

arXiv2021

Faithful Embeddings for Knowledge Base Queries

The deductive closure of an ideal knowledge base (KB) contains exactly the logical queries that the KB can answer. However, in practice KBs are both incomplete and over-specified, failing to answer some queries that have real-world answers. \emph{Query embedding} (QE) techniques have been recently proposed where KB entities and KB queries are represented jointly in an embedding space, supporting relaxation and generalization in KB inference. However, experiments in this paper show that QE systems may disagree with deductive reasoning on answers that do not require generalization or relaxation. We address this problem with a novel QE method that is more faithful to deductive reasoning, and show that this leads to better performance on complex queries to incomplete KBs. Finally we show that inserting this new QE module into a neural question-answering system leads to substantial improvements over the state-of-the-art.

cs.LG↗

arXiv2020

Facts as Experts: Adaptable and Interpretable Neural Memory over Symbolic Knowledge

Massive language models are the core of modern NLP modeling and have been shown to encode impressive amounts of commonsense and factual information. However, that knowledge exists only within the latent parameters of the model, inaccessible to inspection and interpretation, and even worse, factual information memorized from the training corpora is likely to become stale as the world changes. Knowledge stored as parameters will also inevitably exhibit all of the biases inherent in the source materials. To address these problems, we develop a neural language model that includes an explicit interface between symbolically interpretable factual information and subsymbolic neural knowledge. We show that this model dramatically improves performance on two knowledge-intensive question-answering tasks. More interestingly, the model can be updated without re-training by manipulating its symbolic representations. In particular this model allows us to add new facts and overwrite existing ones in ways that are not possible for earlier models.

cs.CL↗

arXiv2020

Differentiable Reasoning over a Virtual Knowledge Base

We consider the task of answering complex multi-hop questions using a corpus as a virtual knowledge base (KB). In particular, we describe a neural module, DrKIT, that traverses textual data like a KB, softly following paths of relations between mentions of entities in the corpus. At each step the module uses a combination of sparse-matrix TFIDF indices and a maximum inner product search (MIPS) on a special index of contextual representations of the mentions. This module is differentiable, so the full system can be trained end-to-end using gradient based methods, starting from natural language inputs. We also describe a pretraining scheme for the contextual representation encoder by generating hard negative examples using existing knowledge bases. We show that DrKIT improves accuracy by 9 points on 3-hop questions in the MetaQA dataset, cutting the gap between text-based and KB-based state-of-the-art by 70%. On HotpotQA, DrKIT leads to a 10% improvement over a BERT-based re-ranking approach to retrieving the relevant passages required to answer a question. DrKIT is also very efficient, processing 10-100x more queries per second than existing multi-hop systems.

cs.CL↗

arXiv2020

Scalable Neural Methods for Reasoning With a Symbolic Knowledge Base

We describe a novel way of representing a symbolic knowledge base (KB) called a sparse-matrix reified KB. This representation enables neural modules that are fully differentiable, faithful to the original semantics of the KB, expressive enough to model multi-hop inferences, and scalable enough to use with realistically large KBs. The sparse-matrix reified KB can be distributed across multiple GPUs, can scale to tens of millions of entities and facts, and is orders of magnitude faster than naive sparse-matrix implementations. The reified KB enables very simple end-to-end architectures to obtain competitive performance on several benchmarks representing two families of tasks: KB completion, and learning semantic parsers from denotations.

cs.CL↗

arXiv2019

Game Design for Eliciting Distinguishable Behavior

The ability to inferring latent psychological traits from human behavior is key to developing personalized human-interacting machine learning systems. Approaches to infer such traits range from surveys to manually-constructed experiments and games. However, these traditional games are limited because they are typically designed based on heuristics. In this paper, we formulate the task of designing \emph{behavior diagnostic games} that elicit distinguishable behavior as a mutual information maximization problem, which can be solved by optimizing a variational lower bound. Our framework is instantiated by using prospect theory to model varying player traits, and Markov Decision Processes to parameterize the games. We validate our approach empirically, showing that our designed games can successfully distinguish among players with different traits, outperforming manually-designed ones by a large margin.

cs.LG↗

arXiv2019

From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer

Cancers are mainly caused by somatic genomic alterations (SGAs) that perturb cellular signaling systems and eventually activate oncogenic processes. Therefore, understanding the functional impact of SGAs is a fundamental task in cancer biology and precision oncology. Here, we present a deep neural network model with encoder-decoder architecture, referred to as genomic impact transformer (GIT), to infer the functional impact of SGAs on cellular signaling systems through modeling the statistical relationships between SGA events and differentially expressed genes (DEGs) in tumors. The model utilizes a multi-head self-attention mechanism to identify SGAs that likely cause DEGs, or in other words, differentiating potential driver SGAs from passenger ones in a tumor. GIT model learns a vector (gene embedding) as an abstract representation of functional impact for each SGA-affected gene. Given SGAs of a tumor, the model can instantiate the states of the hidden layer, providing an abstract representation (tumor embedding) reflecting characteristics of perturbed molecular/cellular processes in the tumor, which in turn can be used to predict multiple phenotypes. We apply the GIT model to 4,468 tumors profiled by The Cancer Genome Atlas (TCGA) project. The attention mechanism enables the model to better capture the statistical relationship between SGAs and DEGs than conventional methods, and distinguishes cancer drivers from passengers. The learned gene embeddings capture the functional similarity of SGAs perturbing common pathways. The tumor embeddings are shown to be useful for tumor status representation, and phenotype prediction including patient survival time and drug response of cancer cell lines.

q-bio.MN↗

arXiv2019

PubMedQA: A Dataset for Biomedical Research Question Answering

We introduce PubMedQA, a novel biomedical question answering (QA) dataset collected from PubMed abstracts. The task of PubMedQA is to answer research questions with yes/no/maybe (e.g.: Do preoperative statins reduce atrial fibrillation after coronary artery bypass grafting?) using the corresponding abstracts. PubMedQA has 1k expert-annotated, 61.2k unlabeled and 211.3k artificially generated QA instances. Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion. PubMedQA is the first QA dataset where reasoning over biomedical research texts, especially their quantitative contents, is required to answer the questions. Our best performing model, multi-phase fine-tuning of BioBERT with long answer bag-of-word statistics as additional supervision, achieves 68.1% accuracy, compared to single human performance of 78.0% accuracy and majority-baseline of 55.2% accuracy, leaving much room for improvement. PubMedQA is publicly available at https://pubmedqa.github.io.

cs.CL↗

arXiv2019

Handling Divergent Reference Texts when Evaluating Table-to-Text Generation

Automatically constructed datasets for generating text from semi-structured data (tables), such as WikiBio, often contain reference texts that diverge from the information in the corresponding semi-structured data. We show that metrics which rely solely on the reference texts, such as BLEU and ROUGE, show poor correlation with human judgments when those references diverge. We propose a new metric, PARENT, which aligns n-grams from the reference and generated texts to the semi-structured data before computing their precision and recall. Through a large scale human evaluation study of table-to-text models for WikiBio, we show that PARENT correlates with human judgments better than existing text generation metrics. We also adapt and evaluate the information extraction based evaluation proposed by Wiseman et al (2017), and show that PARENT has comparable correlation to it, while being easier to use. We show that PARENT is also applicable when the reference texts are elicited from humans using the data from the WebNLG challenge.

cs.CL↗

arXiv2019

Differentiable Representations For Multihop Inference Rules

We present efficient differentiable implementations of second-order multi-hop reasoning using a large symbolic knowledge base (KB). We introduce a new operation which can be used to compositionally construct second-order multi-hop templates in a neural model, and evaluate a number of alternative implementations, with different time and memory trade offs. These techniques scale to KBs with millions of entities and tens of millions of triples, and lead to simple models with competitive performance on several learning tasks requiring multi-hop reasoning.

cs.LG↗

arXiv2019

Neural Query Language: A Knowledge Base Query Language for Tensorflow

Large knowledge bases (KBs) are useful for many AI tasks, but are difficult to integrate into modern gradient-based learning systems. Here we describe a framework for accessing soft symbolic database using only differentiable operators. For example, this framework makes it easy to conveniently write neural models that adjust confidences associated with facts in a soft KB; incorporate prior knowledge in the form of hand-coded KB access rules; or learn to instantiate query templates using information extracted from text. NQL can work well with KBs with millions of tuples and hundreds of thousands of entities on a single GPU.

cs.LG↗

arXiv2019

PullNet: Open Domain Question Answering with Iterative Retrieval on Knowledge Bases and Text

We consider open-domain queston answering (QA) where answers are drawn from either a corpus, a knowledge base (KB), or a combination of both of these. We focus on a setting in which a corpus is supplemented with a large but incomplete KB, and on questions that require non-trivial (e.g., ``multi-hop'') reasoning. We describe PullNet, an integrated framework for (1) learning what to retrieve (from the KB and/or corpus) and (2) reasoning with this heterogeneous information to find the best answer. PullNet uses an {iterative} process to construct a question-specific subgraph that contains information relevant to the question. In each iteration, a graph convolutional network (graph CNN) is used to identify subgraph nodes that should be expanded using retrieval (or ``pull'') operations on the corpus and/or KB. After the subgraph is complete, a similar graph CNN is used to extract the answer from the subgraph. This retrieve-and-reason process allows us to answer multi-hop questions using large KBs and corpora. PullNet is weakly supervised, requiring question-answer pairs but not gold inference paths. Experimentally PullNet improves over the prior state-of-the art, and in the setting where a corpus is used with incomplete KB these improvements are often dramatic. PullNet is also often superior to prior systems in a KB-only setting or a text-only setting.

cs.CL↗

arXiv2019

Probing Biomedical Embeddings from Language Models

Contextualized word embeddings derived from pre-trained language models (LMs) show significant improvements on downstream NLP tasks. Pre-training on domain-specific corpora, such as biomedical articles, further improves their performance. In this paper, we conduct probing experiments to determine what additional information is carried intrinsically by the in-domain trained contextualized embeddings. For this we use the pre-trained LMs as fixed feature extractors and restrict the downstream task models to not have additional sequence modeling layers. We compare BERT, ELMo, BioBERT and BioELMo, a biomedical version of ELMo trained on 10M PubMed abstracts. Surprisingly, while fine-tuned BioBERT is better than BioELMo in biomedical NER and NLI tasks, as a fixed feature extractor BioELMo outperforms BioBERT in our probing tasks. We use visualization and nearest neighbor analysis to show that better encoding of entity-type and relational information leads to this superiority.

cs.CL↗