arXiv subjects

Xiangyu Shi

Publications and source records attributed to Xiangyu Shi.

26 records · Page 2Linked to original sources

arXiv2025

SmartWay: Enhanced Waypoint Prediction and Backtracking for Zero-Shot Vision-and-Language Navigation

Vision-and-Language Navigation (VLN) in continuous environments requires agents to interpret natural language instructions while navigating unconstrained 3D spaces. Existing VLN-CE frameworks rely on a two-stage approach: a waypoint predictor to generate waypoints and a navigator to execute movements. However, current waypoint predictors struggle with spatial awareness, while navigators lack historical reasoning and backtracking capabilities, limiting adaptability. We propose a zero-shot VLN-CE framework integrating an enhanced waypoint predictor with a Multi-modal Large Language Model (MLLM)-based navigator. Our predictor employs a stronger vision encoder, masked cross-attention fusion, and an occupancy-aware loss for better waypoint quality. The navigator incorporates history-aware reasoning and adaptive path planning with backtracking, improving robustness. Experiments on R2R-CE and MP3D benchmarks show our method achieves state-of-the-art (SOTA) performance in zero-shot settings, demonstrating competitive results compared to fully supervised methods. Real-world validation on Turtlebot 4 further highlights its adaptability.

cs.RO↗

arXiv2025

DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design

Inverse Protein Folding (IPF) is a critical subtask in the field of protein design, aiming to engineer amino acid sequences capable of folding correctly into a specified three-dimensional (3D) conformation. Although substantial progress has been achieved in recent years, existing methods generally rely on either backbone coordinates or molecular surface features alone, which restricts their ability to fully capture the complex chemical and geometric constraints necessary for precise sequence prediction. To address this limitation, we present DS-ProGen, a dual-structure deep language model for functional protein design, which integrates both backbone geometry and surface-level representations. By incorporating backbone coordinates as well as surface chemical and geometric descriptors into a next-amino-acid prediction paradigm, DS-ProGen is able to generate functionally relevant and structurally stable sequences while satisfying both global and local conformational constraints. On the PRIDE dataset, DS-ProGen attains the current state-of-the-art recovery rate of 61.47%, demonstrating the synergistic advantage of multi-modal structural encoding in protein design. Furthermore, DS-ProGen excels in predicting interactions with a variety of biological partners, including ligands, ions, and RNA, confirming its robust functional retention capabilities.

cs.CL↗

arXiv2025

Benchmarking Large Language Models on Multiple Tasks in Bioinformatics NLP with Prompting

Large language models (LLMs) have become important tools in solving biological problems, offering improvements in accuracy and adaptability over conventional methods. Several benchmarks have been proposed to evaluate the performance of these LLMs. However, current benchmarks can hardly evaluate the performance of these models across diverse tasks effectively. In this paper, we introduce a comprehensive prompting-based benchmarking framework, termed Bio-benchmark, which includes 30 key bioinformatics tasks covering areas such as proteins, RNA, drugs, electronic health records, and traditional Chinese medicine. Using this benchmark, we evaluate six mainstream LLMs, including GPT-4o and Llama-3.1-70b, etc., using 0-shot and few-shot Chain-of-Thought (CoT) settings without fine-tuning to reveal their intrinsic capabilities. To improve the efficiency of our evaluations, we demonstrate BioFinder, a new tool for extracting answers from LLM responses, which increases extraction accuracy by round 30% compared to existing methods. Our benchmark results show the biological tasks suitable for current LLMs and identify specific areas requiring enhancement. Furthermore, we propose targeted prompt engineering strategies for optimizing LLM performance in these contexts. Based on these findings, we provide recommendations for the development of more robust LLMs tailored for various biological applications. This work offers a comprehensive evaluation framework and robust tools to support the application of LLMs in bioinformatics.

cs.CL↗

arXiv2025

Towards Faster k-Nearest-Neighbor Machine Translation

Recent works have proven the effectiveness of k-nearest-neighbor machine translation(a.k.a kNN-MT) approaches to produce remarkable improvement in cross-domain translations. However, these models suffer from heavy retrieve overhead on the entire datastore when decoding each token. We observe that during the decoding phase, about 67% to 84% of tokens are unvaried after searching over the corpus datastore, which means most of the tokens cause futile retrievals and introduce unnecessary computational costs by initiating k-nearest-neighbor searches. We consider this phenomenon is explainable in linguistics and propose a simple yet effective multi-layer perceptron (MLP) network to predict whether a token should be translated jointly by the neural machine translation model and probabilities produced by the kNN or just by the neural model. The results show that our method succeeds in reducing redundant retrieval operations and significantly reduces the overhead of kNN retrievals by up to 53% at the expense of a slight decline in translation quality. Moreover, our method could work together with all existing kNN-MT systems. This work has been accepted for publication in the jornal Advances in Artificial Intelligence and Machine Learning (ISSN: 2582-9793). The final published version can be found at DOI: https://dx.doi.org/10.54364/AAIML.2024.41111

cs.CL↗

arXiv2024

Improving Online Source-free Domain Adaptation for Object Detection by Unsupervised Data Acquisition

Effective object detection in autonomous vehicles is challenged by deployment in diverse and unfamiliar environments. Online Source-Free Domain Adaptation (O-SFDA) offers model adaptation using a stream of unlabeled data from a target domain in an online manner. However, not all captured frames contain information beneficial for adaptation, especially in the presence of redundant data and class imbalance issues. This paper introduces a novel approach to enhance O-SFDA for adaptive object detection through unsupervised data acquisition. Our methodology prioritizes the most informative unlabeled frames for inclusion in the online training process. Empirical evaluation on a real-world dataset reveals that our method outperforms existing state-of-the-art O-SFDA techniques, demonstrating the viability of unsupervised data acquisition for improving the adaptive object detector.

cs.CV↗

arXiv2024

TransportationGames: Benchmarking Transportation Knowledge of (Multimodal) Large Language Models

Large language models (LLMs) and multimodal large language models (MLLMs) have shown excellent general capabilities, even exhibiting adaptability in many professional domains such as law, economics, transportation, and medicine. Currently, many domain-specific benchmarks have been proposed to verify the performance of (M)LLMs in specific fields. Among various domains, transportation plays a crucial role in modern society as it impacts the economy, the environment, and the quality of life for billions of people. However, it is unclear how much traffic knowledge (M)LLMs possess and whether they can reliably perform transportation-related tasks. To address this gap, we propose TransportationGames, a carefully designed and thorough evaluation benchmark for assessing (M)LLMs in the transportation domain. By comprehensively considering the applications in real-world scenarios and referring to the first three levels in Bloom's Taxonomy, we test the performance of various (M)LLMs in memorizing, understanding, and applying transportation knowledge by the selected tasks. The experimental results show that although some models perform well in some tasks, there is still much room for improvement overall. We hope the release of TransportationGames can serve as a foundation for future research, thereby accelerating the implementation and application of (M)LLMs in the transportation domain.

cs.CL↗

arXiv2023

Audio compression-assisted feature extraction for voice replay attack detection

Replay attack is one of the most effective and simplest voice spoofing attacks. Detecting replay attacks is challenging, according to the Automatic Speaker Verification Spoofing and Countermeasures Challenge 2021 (ASVspoof 2021), because they involve a loudspeaker, a microphone, and acoustic conditions (e.g., background noise). One obstacle to detecting replay attacks is finding robust feature representations that reflect the channel noise information added to the replayed speech. This study proposes a feature extraction approach that uses audio compression for assistance. Audio compression compresses audio to preserve content and speaker information for transmission. The missed information after decompression is expected to contain content- and speaker-independent information (e.g., channel noise added during the replay process). We conducted a comprehensive experiment with a few data augmentation techniques and 3 classifiers on the ASVspoof 2021 physical access (PA) set and confirmed the effectiveness of the proposed feature extraction approach. To the best of our knowledge, the proposed approach achieves the lowest EER at 22.71% on the ASVspoof 2021 PA evaluation set.

cs.SD↗

arXiv2022

AutoMC: Automated Model Compression based on Domain Knowledge and Progressive search strategy

Model compression methods can reduce model complexity on the premise of maintaining acceptable performance, and thus promote the application of deep neural networks under resource constrained environments. Despite their great success, the selection of suitable compression methods and design of details of the compression scheme are difficult, requiring lots of domain knowledge as support, which is not friendly to non-expert users. To make more users easily access to the model compression scheme that best meet their needs, in this paper, we propose AutoMC, an effective automatic tool for model compression. AutoMC builds the domain knowledge on model compression to deeply understand the characteristics and advantages of each compression method under different settings. In addition, it presents a progressive search strategy to efficiently explore pareto optimal compression scheme according to the learned prior knowledge combined with the historical evaluation information. Extensive experimental results show that AutoMC can provide satisfying compression schemes within short time, demonstrating the effectiveness of AutoMC.

cs.LG↗