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Xiangyu Su

Publications and source records attributed to Xiangyu Su.

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Efficient Proton Relay Orchestrated by Covalent Bond Switching of Active Amino Acids in Protein Channels

Through systematic mutational simulations of the key site in a proton channel, we find that 13 of the 20 canonical amino acid residues are active for proton transfer through covalent bond switching, whereas the remaining 7 residues, whose side chains terminate in sp3 hybridized carbon-hydrogen covalent bonds, do not undergo such bond switching and are therefore inactive. All active residues have a negative electrostatic potential extremum at the proton accepting atom and lower energy barriers for proton relay orchestrated by bond switching, whereas the inactive residues have positive electrostatic potential extremum and significantly higher barriers for bond switching. We further find that the active residues tend to be distributed within the pore to mediate proton transfer, while the inactive residues are enriched in the periphery to stabilize the structure. This bond switching activity can also be observed in respiratory complex I. These findings establish a new classification criterion for amino acids based on their covalent bond switching activity, providing insights into how life utilizes the 20 types of amino acids.

physics.bio-ph

IMR-LLM: Industrial Multi-Robot Task Planning and Program Generation using Large Language Models

In modern industrial production, multiple robots often collaborate to complete complex manufacturing tasks. Large language models (LLMs), with their strong reasoning capabilities, have shown potential in coordinating robots for simple household and manipulation tasks. However, in industrial scenarios, stricter sequential constraints and more complex dependencies within tasks present new challenges for LLMs. To address this, we propose IMR-LLM, a novel LLM-driven Industrial Multi-Robot task planning and program generation framework. Specifically, we utilize LLMs to assist in constructing disjunctive graphs and employ deterministic solving methods to obtain a feasible and efficient high-level task plan. Based on this, we use a process tree to guide LLMs to generate executable low-level programs. Additionally, we create IMR-Bench, a challenging benchmark that encompasses multi-robot industrial tasks across three levels of complexity. Experimental results indicate that our method significantly surpasses existing methods across all evaluation metrics.

cs.RO

Photo-to-Shape Material Transfer for Diverse Structures

We introduce a method for assigning photorealistic relightable materials to 3D shapes in an automatic manner. Our method takes as input a photo exemplar of a real object and a 3D object with segmentation, and uses the exemplar to guide the assignment of materials to the parts of the shape, so that the appearance of the resulting shape is as similar as possible to the exemplar. To accomplish this goal, our method combines an image translation neural network with a material assignment neural network. The image translation network translates the color from the exemplar to a projection of the 3D shape and the part segmentation from the projection to the exemplar. Then, the material prediction network assigns materials from a collection of realistic materials to the projected parts, based on the translated images and perceptual similarity of the materials. One key idea of our method is to use the translation network to establish a correspondence between the exemplar and shape projection, which allows us to transfer materials between objects with diverse structures. Another key idea of our method is to use the two pairs of (color, segmentation) images provided by the image translation to guide the material assignment, which enables us to ensure the consistency in the assignment. We demonstrate that our method allows us to assign materials to shapes so that their appearances better resemble the input exemplars, improving the quality of the results over the state-of-the-art method, and allowing us to automatically create thousands of shapes with high-quality photorealistic materials. Code and data for this paper are available at https://github.com/XiangyuSu611/TMT.

cs.GR

A t-out-of-n Redactable Signature Scheme

A redactable signature scheme allows removing parts of a signed message without invalidating the signature. Currently, the need to prove the validity of digital documents issued by governments and enterprises is increasing. However, when disclosing documents, governments and enterprises must remove privacy information concerning individuals. A redactable signature scheme is useful for such a situation. In this paper, we introduce the new notion of the t-out-of-n redactable signature scheme. This scheme has a signer, n redactors, a combiner, and a verifier. The signer designates n redactors and a combiner in advance and generates a signature of a message M. Each redactor decides parts that he or she wants to remove from the message and generates a piece of redaction information. The combiner collects pieces of redaction information from all redactors, extracts parts of the message that more than t redactors want to remove, and generate a redacted message. We consider the one-time redaction model which allows redacting signatures generated by the signer only once. We formalize the one-time redaction t-out-of-n redactable signature scheme, define security, and give a construction using the pairing based aggregate signature scheme in the random oracle model.

cs.CR