arXiv subjects

Xianqiao Wang

Publications and source records attributed to Xianqiao Wang.

At least 19 recordsLinked to original sources

arXiv2026

Evaluation of OpenAI o1: Opportunities and Challenges of AGI

This comprehensive study evaluates the performance of OpenAI's o1-preview large language model across a diverse array of complex reasoning tasks, spanning multiple domains, including computer science, mathematics, natural sciences, medicine, linguistics, and social sciences. Through rigorous testing, o1-preview demonstrated remarkable capabilities, often achieving human-level or superior performance in areas ranging from coding challenges to scientific reasoning and from language processing to creative problem-solving. Key findings include: -83.3% success rate in solving complex competitive programming problems, surpassing many human experts. -Superior ability in generating coherent and accurate radiology reports, outperforming other evaluated models. -100% accuracy in high school-level mathematical reasoning tasks, providing detailed step-by-step solutions. -Advanced natural language inference capabilities across general and specialized domains like medicine. -Impressive performance in chip design tasks, outperforming specialized models in areas such as EDA script generation and bug analysis. -Remarkable proficiency in anthropology and geology, demonstrating deep understanding and reasoning in these specialized fields. -Strong capabilities in quantitative investing. O1 has comprehensive financial knowledge and statistical modeling skills. -Effective performance in social media analysis, including sentiment analysis and emotion recognition. The model excelled particularly in tasks requiring intricate reasoning and knowledge integration across various fields. While some limitations were observed, including occasional errors on simpler problems and challenges with certain highly specialized concepts, the overall results indicate significant progress towards artificial general intelligence.

cs.CL↗

arXiv2026

Stiff-FCS: Single-Cell Stiffness Profiling With Integrated Molecular and Functional Analysis

Cell stiffness is a key determinant of how cells deform, migrate, and adapt to mechanically restrictive environments, yet existing single-cell stiffness assays remain difficult to combine with molecular analysis and downstream functional studies. To address these limitations, we introduce a microfluidic platform, stiffness-based ferrohydrodynamic cell sorting (Stiff-FCS), designed for high-throughput quantification of single-cell stiffness, on-chip molecular analysis, and post-assay cell recovery. Stiff-FCS combines ferrofluid-driven actuation with graded confinement channels to control cell movement, induce deformation, and spatially separate cells based on stiffness. An inverse computational model converts cell position and morphology into quantitative Young's modulus values. We demonstrate stiffness profiling of hundreds to thousands of cells per chip within minutes, same-cell fluorescence-based protein analysis, and recovery of stiffness-defined cells for downstream assays. Across diverse human and mouse cell lines, Lamin A/C showed the most consistent association with stiffness, whereas softer cells exhibited greater migratory capacity than stiffer cells. In a series of human head and neck cancer cell models, Stiff-FCS further resolved a stiff, less migratory subpopulation enriched in a higher-molecular-weight Vimentin state, offering a workflow for linking single-cell stiffness to molecular heterogeneity and cell behavior.

q-bio.CB↗

arXiv2026

Tau-induced atrophy drives functional connectivity disruption in Alzheimer's disease

Alzheimer's disease involves progressive tau accumulation and spread, leading to regional brain atrophy and disruption of large-scale functional networks. While tau propagation and tissue degeneration have been widely modeled, how atrophy dynamics translate into functional connectivity (FC) degradation remains unclear. Here, we develop a multiphysics framework integrating anisotropic tau reaction-diffusion, finite-deformation biomechanics, and network modeling to link tau-driven atrophy with FC changes. Model fidelity is evaluated by quantitatively comparing simulated atrophy patterns with imaging-derived measurements. Using longitudinal structural and functional MRI, we identify an approximately linear relationship between regional atrophy rates and FC change. We then construct an atrophy-informed structural network degradation matrix from model-predicted region-specific atrophy rates and embed it into a neural oscillation model to predict FC disruption. Our results show that (i) the coupled reaction-diffusion-biomechanical model reproduces observed regional atrophy, (ii) regional atrophy rates parsimoniously predict longitudinal FC changes, and (iii) the atrophy-informed degradation matrix captures the direction and relative magnitude of regional FC disruption. By converting tau-driven atrophy into predictive FC trajectories, the proposed framework offers a clinically interpretable avenue for forecasting disease progression and informing trial design.

physics.med-ph↗

arXiv2025

Build AI Assistants using Large Language Models and Agents to Enhance the Engineering Education of Biomechanics

While large language models (LLMs) have demonstrated remarkable versatility across a wide range of general tasks, their effectiveness often diminishes in domain-specific applications due to inherent knowledge gaps. Moreover, their performance typically declines when addressing complex problems that require multi-step reasoning and analysis. In response to these challenges, we propose leveraging both LLMs and AI agents to develop education assistants aimed at enhancing undergraduate learning in biomechanics courses that focus on analyzing the force and moment in the musculoskeletal system of the human body. To achieve our goal, we construct a dual-module framework to enhance LLM performance in biomechanics educational tasks: 1) we apply Retrieval-Augmented Generation (RAG) to improve the specificity and logical consistency of LLM's responses to the conceptual true/false questions; 2) we build a Multi-Agent System (MAS) to solve calculation-oriented problems involving multi-step reasoning and code execution. Specifically, we evaluate the performance of several LLMs, i.e., Qwen-1.0-32B, Qwen-2.5-32B, and Llama-70B, on a biomechanics dataset comprising 100 true/false conceptual questions and problems requiring equation derivation and calculation. Our results demonstrate that RAG significantly enhances the performance and stability of LLMs in answering conceptual questions, surpassing those of vanilla models. On the other hand, the MAS constructed using multiple LLMs demonstrates its ability to perform multi-step reasoning, derive equations, execute code, and generate explainable solutions for tasks that require calculation. These findings demonstrate the potential of applying RAG and MAS to enhance LLM performance for specialized courses in engineering curricula, providing a promising direction for developing intelligent tutoring in engineering education.

cs.AI↗

arXiv2025

Ferrohydrodynamic Microfluidics for Bioparticle Separation and Single-Cell Phenotyping: Principles, Applications, and Emerging Directions

Ferrohydrodynamic microfluidics relies on magnetic field gradients to manipulate diamagnetic particles in ferrofluid-filled microenvironments. It has emerged as a promising tool for label-free manipulation of bioparticles, including their separation and phenotyping. This perspective reviews recent progress in the development and applications of ferrofluid-based microfluidic platforms for multiscale bioparticle separation, ranging from micron-scale cells to submicron extracellular vesicles. We highlight the fundamental physical principles for ferrohydrodynamic manipulation, including the dominant magnetic buoyancy force resulting from the interaction of ferrofluids and particles. We then describe how these principles enable high-resolution size-based bioparticle separation, subcellular bioparticle enrichment, and phenotypic screening based on physical traits. We also discuss key challenges in ferrohydrodynamic microfluidics from the aspects of ferrofluid biocompatibility, system throughput, and nanoparticle depletion. Finally, we outline future research directions involving machine learning, 3D printing, and multiplexed detection. These insights chart a path for advancing ferrofluid-based technologies in precision biomedicine, diagnostics, and cellular engineering.

eess.SY↗

arXiv2025

Automatic Classification of Circulating Blood Cell Clusters based on Multi-channel Flow Cytometry Imaging

Circulating blood cell clusters (CCCs) containing red blood cells (RBCs), white blood cells(WBCs), and platelets are significant biomarkers linked to conditions like thrombosis, infection, and inflammation. Flow cytometry, paired with fluorescence staining, is commonly used to analyze these cell clusters, revealing cell morphology and protein profiles. While computational approaches based on machine learning have advanced the automatic analysis of single-cell flow cytometry images, there is a lack of effort to build tools to automatically analyze images containing CCCs. Unlike single cells, cell clusters often exhibit irregular shapes and sizes. In addition, these cell clusters often consist of heterogeneous cell types, which require multi-channel staining to identify the specific cell types within the clusters. This study introduces a new computational framework for analyzing CCC images and identifying cell types within clusters. Our framework uses a two-step analysis strategy. First, it categorizes images into cell cluster and non-cluster groups by fine-tuning the You Only Look Once(YOLOv11) model, which outperforms traditional convolutional neural networks (CNNs), Vision Transformers (ViT). Then, it identifies cell types by overlaying cluster contours with regions from multi-channel fluorescence stains, enhancing accuracy despite cell debris and staining artifacts. This approach achieved over 95% accuracy in both cluster classification and phenotype identification. In summary, our automated framework effectively analyzes CCC images from flow cytometry, leveraging both bright-field and fluorescence data. Initially tested on blood cells, it holds potential for broader applications, such as analyzing immune and tumor cell clusters, supporting cellular research across various diseases.

cs.CV↗

arXiv2025

Physics-informed deep learning for infectious disease forecasting

Accurate forecasting of contagious diseases is critical for public health policymaking and pandemic preparedness. We propose a new infectious disease forecasting model based on physics-informed neural networks (PINNs), an emerging scientific machine learning approach. By embedding a compartmental model into the loss function, our method integrates epidemiological theory with data, helping to prevent model overfitting. We further enhance the model with a sub-network that accounts for covariates such as mobility and cumulative vaccine doses, which influence the transmission rate. Using state-level COVID-19 data from California, we demonstrate that the PINN model accurately predicts cases, deaths, and hospitalizations, aligning well with existing benchmarks. Notably, the PINN model outperforms naive baseline forecasts and several sequence deep learning models, including Recurrent Neural Networks (RNNs), Long Short-Term Memory (LSTM) networks, Gated Recurrent Units (GRUs), and Transformers. It also achieves performance comparable to a sophisticated Gaussian infection state forecasting model that combines compartmental dynamics, a data observation model, and parameter regression. However, the PINN model features a simpler structure and is easier to implement. In summary, we systematically evaluate the PINN model's ability to forecast infectious disease dynamics, demonstrating its potential as an efficient computational tool to strengthen forecasting capabilities.

cs.LG↗

arXiv2025

Mechanical Characterization of Brain Tissue: Experimental Techniques, Human Testing Considerations, and Perspectives

Understanding the mechanical behavior of brain tissue is crucial for advancing both fundamental neuroscience and clinical applications. Yet, accurately measuring these properties remains challenging due to the brain unique mechanical attributes and complex anatomical structures. This review provides a comprehensive overview of commonly used techniques for characterizing brain tissue mechanical properties, covering both invasive methods such as atomic force microscopy, indentation, axial mechanical testing, and oscillatory shear testing and noninvasive approaches like magnetic resonance elastography and ultrasound elastography. Each technique is evaluated in terms of working principles, applicability, representative studies, and experimental limitations. We further summarize existing publications that have used these techniques to measure human brain tissue mechanical properties. With a primary focus on invasive studies, we systematically compare their sample preparation, testing conditions, reported mechanical parameters, and modeling strategies. Key sensitivity factors influencing testing outcomes (e.g., sample size, anatomical location, strain rate, temperature, conditioning, and post-mortem interval) are also discussed. Additionally, selected noninvasive studies are reviewed to assess their potential for in vivo characterization. A comparative discussion between invasive and noninvasive methods, as well as in vivo versus ex vivo testing, is included. This review aims to offer practical guidance for researchers and clinicians in selecting appropriate mechanical testing approaches and contributes a curated dataset to support constitutive modeling of human brain tissue.

physics.med-ph↗

arXiv2025

A Multi-Agent Framework Integrating Large Language Models and Generative AI for Accelerated Metamaterial Design

Metamaterials, renowned for their exceptional mechanical, electromagnetic, and thermal properties, hold transformative potential across diverse applications, yet their design remains constrained by labor-intensive trial-and-error methods and limited data interoperability. Here, we introduce CrossMatAgent -- a novel multi-agent framework that synergistically integrates large language models with state-of-the-art generative AI to revolutionize metamaterial design. By orchestrating a hierarchical team of agents -- each specializing in tasks such as pattern analysis, architectural synthesis, prompt engineering, and supervisory feedback -- our system leverages the multimodal reasoning of GPT-4o alongside the generative precision of DALL-E 3 and a fine-tuned Stable Diffusion XL model. This integrated approach automates data augmentation, enhances design fidelity, and produces simulation- and 3D printing-ready metamaterial patterns. Comprehensive evaluations, including CLIP-based alignment, SHAP interpretability analyses, and mechanical simulations under varied load conditions, demonstrate the framework's ability to generate diverse, reproducible, and application-ready designs. CrossMatAgent thus establishes a scalable, AI-driven paradigm that bridges the gap between conceptual innovation and practical realization, paving the way for accelerated metamaterial development.

cond-mat.mtrl-sci↗

arXiv2025

Large Language Models for Bioinformatics

With the rapid advancements in large language model (LLM) technology and the emergence of bioinformatics-specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational characteristics, and diverse applications. This survey aims to address this need by providing a thorough review of BioLMs, focusing on their evolution, classification, and distinguishing features, alongside a detailed examination of training methodologies, datasets, and evaluation frameworks. We explore the wide-ranging applications of BioLMs in critical areas such as disease diagnosis, drug discovery, and vaccine development, highlighting their impact and transformative potential in bioinformatics. We identify key challenges and limitations inherent in BioLMs, including data privacy and security concerns, interpretability issues, biases in training data and model outputs, and domain adaptation complexities. Finally, we highlight emerging trends and future directions, offering valuable insights to guide researchers and clinicians toward advancing BioLMs for increasingly sophisticated biological and clinical applications.

q-bio.QM↗

arXiv2024

Large Language Models for Manufacturing

The rapid advances in Large Language Models (LLMs) have the potential to transform manufacturing industry, offering new opportunities to optimize processes, improve efficiency, and drive innovation. This paper provides a comprehensive exploration of the integration of LLMs into the manufacturing domain, focusing on their potential to automate and enhance various aspects of manufacturing, from product design and development to quality control, supply chain optimization, and talent management. Through extensive evaluations across multiple manufacturing tasks, we demonstrate the remarkable capabilities of state-of-the-art LLMs, such as GPT-4V, in understanding and executing complex instructions, extracting valuable insights from vast amounts of data, and facilitating knowledge sharing. We also delve into the transformative potential of LLMs in reshaping manufacturing education, automating coding processes, enhancing robot control systems, and enabling the creation of immersive, data-rich virtual environments through the industrial metaverse. By highlighting the practical applications and emerging use cases of LLMs in manufacturing, this paper aims to provide a valuable resource for professionals, researchers, and decision-makers seeking to harness the power of these technologies to address real-world challenges, drive operational excellence, and unlock sustainable growth in an increasingly competitive landscape.

cs.AI↗

arXiv2024

Role of Data-driven Regional Growth Model in Shaping Brain Folding Patterns

The surface morphology of the developing mammalian brain is crucial for understanding brain function and dysfunction. Computational modeling offers valuable insights into the underlying mechanisms for early brain folding. Recent findings indicate significant regional variations in brain tissue growth, while the role of these variations in cortical development remains unclear. In this study, we unprecedently explored how regional cortical growth affects brain folding patterns using computational simulation. We first developed growth models for typical cortical regions using machine learning (ML)-assisted symbolic regression, based on longitudinal real surface expansion and cortical thickness data from prenatal and infant brains derived from over 1,000 MRI scans of 735 pediatric subjects with ages ranging from 29 post-menstrual weeks to 24 months. These models were subsequently integrated into computational software to simulate cortical development with anatomically realistic geometric models. We comprehensively quantified the resulting folding patterns using multiple metrics such as mean curvature, sulcal depth, and gyrification index. Our results demonstrate that regional growth models generate complex brain folding patterns that more closely match actual brains structures, both quantitatively and qualitatively, compared to conventional uniform growth models. Growth magnitude plays a dominant role in shaping folding patterns, while growth trajectory has a minor influence. Moreover, multi-region models better capture the intricacies of brain folding than single-region models. Our results underscore the necessity and importance of incorporating regional growth heterogeneity into brain folding simulations, which could enhance early diagnosis and treatment of cortical malformations and neurodevelopmental disorders such as cerebral palsy and autism.

q-bio.NC↗

arXiv2024

Hyperelasticity of Blood Clots: Bridging the Gap between Microscopic and Continuum Scales

The biomechanical properties of blood clots, which are dictated by their compositions and micro-structures, play a critical role in determining their fates, occlusion, persistency, or embolization in the human circulatory system. While numerous constitutive models have emerged to describe the biomechanics of blood clots, the majority of these models have primarily focused on the macroscopic deformation of the clots and the resultant strain-stress correlations without depicting the microscopic contributions from their structural components, such as fibrin fibers, fibrin network and red blood cells. This work addresses the gap in current scientific understanding by quantifying how changes in the microstructure of blood clots affect its mechanical responses under different external stresses. We leverage our previous published work to develop a hyperelastic potential model for blood clots, which incorporates six distinct strain-energy components to describe the alignment of fibers, the entropic and enthalpic stretching of fibrin fibers, the buckling of these fibers, clot densification, and clot jamming.These strain-energy components are represented by a combination of simple harmonic oscillators, one-sided harmonic potentials, and a Gaussian potential. The proposed model, which is C0, C1, and C2 continuous with a total of 13 parameters, has been validated against three data sets: fibrin clot in tension, blood clot in compression, and blood clots in shear, demonstrating its robustness. Subsequent simulations of a microscopic blood clot model are performed to uncover mechanistic correlations for a majority of the hyperelastic potential's stiffness/strain parameters. Our results show that only one proposed term concerning fiber buckling needs further refinement, while the remaining five strain-energy terms appear to describe precisely what they were intended to.

physics.bio-ph↗

arXiv2024

Automated Data-Driven Discovery of Material Models Based on Symbolic Regression: A Case Study on Human Brain Cortex

We introduce a data-driven framework to automatically identify interpretable and physically meaningful hyperelastic constitutive models from sparse data. Leveraging symbolic regression, an algorithm based on genetic programming, our approach generates elegant hyperelastic models that achieve accurate data fitting through parsimonious mathematic formulae, while strictly adhering to hyperelasticity constraints such as polyconvexity. Our investigation spans three distinct hyperelastic models -- invariant-based, principal stretch-based, and normal strain-based -- and highlights the versatility of symbolic regression. We validate our new approach using synthetic data from five classic hyperelastic models and experimental data from the human brain to demonstrate algorithmic efficacy. Our results suggest that our symbolic regression robustly discovers accurate models with succinct mathematic expressions in invariant-based, stretch-based, and strain-based scenarios. Strikingly, the strain-based model exhibits superior accuracy, while both stretch- and strain-based models effectively capture the nonlinearity and tension-compression asymmetry inherent to human brain tissue. Polyconvexity examinations affirm the rigor of convexity within the training regime and demonstrate excellent extrapolation capabilities beyond this regime for all three models. However, the stretch-based models raise concerns regarding potential convexity loss under large deformations. Finally, robustness tests on noise-embedded data underscore the reliability of our symbolic regression algorithms. Our study confirms the applicability and accuracy of symbolic regression in the automated discovery of hyperelastic models for the human brain and gives rise to a wide variety of applications in other soft matter systems.

cs.SC↗

arXiv2024

Assessing Large Language Models in Mechanical Engineering Education: A Study on Mechanics-Focused Conceptual Understanding

This study is a pioneering endeavor to investigate the capabilities of Large Language Models (LLMs) in addressing conceptual questions within the domain of mechanical engineering with a focus on mechanics. Our examination involves a manually crafted exam encompassing 126 multiple-choice questions, spanning various aspects of mechanics courses, including Fluid Mechanics, Mechanical Vibration, Engineering Statics and Dynamics, Mechanics of Materials, Theory of Elasticity, and Continuum Mechanics. Three LLMs, including ChatGPT (GPT-3.5), ChatGPT (GPT-4), and Claude (Claude-2.1), were subjected to evaluation against engineering faculties and students with or without mechanical engineering background. The findings reveal GPT-4's superior performance over the other two LLMs and human cohorts in answering questions across various mechanics topics, except for Continuum Mechanics. This signals the potential future improvements for GPT models in handling symbolic calculations and tensor analyses. The performances of LLMs were all significantly improved with explanations prompted prior to direct responses, underscoring the crucial role of prompt engineering. Interestingly, GPT-3.5 demonstrates improved performance with prompts covering a broader domain, while GPT-4 excels with prompts focusing on specific subjects. Finally, GPT-4 exhibits notable advancements in mitigating input bias, as evidenced by guessing preferences for humans. This study unveils the substantial potential of LLMs as highly knowledgeable assistants in both mechanical pedagogy and scientific research.

cs.CL↗

arXiv2023

Exploring hyperelastic material model discovery for human brain cortex: multivariate analysis vs. artificial neural network approaches

Traditional computational methods, such as the finite element analysis, have provided valuable insights into uncovering the underlying mechanisms of brain physical behaviors. However, precise predictions of brain physics require effective constitutive models to represent the intricate mechanical properties of brain tissue. In this study, we aimed to identify the most favorable constitutive material model for human brain tissue. To achieve this, we applied artificial neural network and multiple regression methods to a generalization of widely accepted classic models, and compared the results obtained from these two approaches. To evaluate the applicability and efficacy of the model, all setups were kept consistent across both methods, except for the approach to prevent potential overfitting. Our results demonstrate that artificial neural networks are capable of automatically identifying accurate constitutive models from given admissible estimators. Nonetheless, the five-term and two-term neural network models trained under single-mode and multi-mode loading scenarios, were found to be suboptimal and could be further simplified into two-term and single-term, respectively, with higher accuracy using multiple regression. Our findings highlight the importance of hyperparameters for the artificial neural network and emphasize the necessity for detailed cross-validations of regularization parameters to ensure optimal selection at a global level in the development of material constitutive models. This study validates the applicability and accuracy of artificial neural network to automatically discover constitutive material models with proper regularization as well as the benefits in model simplification without compromising accuracy for traditional multivariable regression.

cs.LG↗

arXiv2023

Towards Artificial General Intelligence (AGI) in the Internet of Things (IoT): Opportunities and Challenges

Artificial General Intelligence (AGI), possessing the capacity to comprehend, learn, and execute tasks with human cognitive abilities, engenders significant anticipation and intrigue across scientific, commercial, and societal arenas. This fascination extends particularly to the Internet of Things (IoT), a landscape characterized by the interconnection of countless devices, sensors, and systems, collectively gathering and sharing data to enable intelligent decision-making and automation. This research embarks on an exploration of the opportunities and challenges towards achieving AGI in the context of the IoT. Specifically, it starts by outlining the fundamental principles of IoT and the critical role of Artificial Intelligence (AI) in IoT systems. Subsequently, it delves into AGI fundamentals, culminating in the formulation of a conceptual framework for AGI's seamless integration within IoT. The application spectrum for AGI-infused IoT is broad, encompassing domains ranging from smart grids, residential environments, manufacturing, and transportation to environmental monitoring, agriculture, healthcare, and education. However, adapting AGI to resource-constrained IoT settings necessitates dedicated research efforts. Furthermore, the paper addresses constraints imposed by limited computing resources, intricacies associated with large-scale IoT communication, as well as the critical concerns pertaining to security and privacy.

cs.AI↗

arXiv2023

AGI for Agriculture

Artificial General Intelligence (AGI) is poised to revolutionize a variety of sectors, including healthcare, finance, transportation, and education. Within healthcare, AGI is being utilized to analyze clinical medical notes, recognize patterns in patient data, and aid in patient management. Agriculture is another critical sector that impacts the lives of individuals worldwide. It serves as a foundation for providing food, fiber, and fuel, yet faces several challenges, such as climate change, soil degradation, water scarcity, and food security. AGI has the potential to tackle these issues by enhancing crop yields, reducing waste, and promoting sustainable farming practices. It can also help farmers make informed decisions by leveraging real-time data, leading to more efficient and effective farm management. This paper delves into the potential future applications of AGI in agriculture, such as agriculture image processing, natural language processing (NLP), robotics, knowledge graphs, and infrastructure, and their impact on precision livestock and precision crops. By leveraging the power of AGI, these emerging technologies can provide farmers with actionable insights, allowing for optimized decision-making and increased productivity. The transformative potential of AGI in agriculture is vast, and this paper aims to highlight its potential to revolutionize the industry.

cs.AI↗