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Xianzheng Huang

Publications and source records attributed to Xianzheng Huang.

18 recordsLinked to original sources

Post-selection inference in generalized linear models via parametric programming

We propose a unified framework to draw inferences for regression coefficients in a generalized linear model (GLM) following Lasso-based variable selection. We adapt to non-Gaussian GLMs a recently developed parametric programming strategy for post-selection inference in the linear model with a Gaussian response by drawing parallels between maximum likelihood estimation in GLMs and least squares estimation in linear models. We then conduct post-selection inference based on a linearized model for pseudo response and covariate data strategically created based on the raw data. Using synthetic data generated from regression models for three different types of non-Gaussian responses in simulation experiments, we demonstrate that the proposed method effectively corrects the naive inference that ignores variable selection while achieving greater efficiency than a polyhedral-based post-selection adjustment.

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Testing-driven Variable Selection in Bayesian Modal Regression

We propose a Bayesian variable selection method in the framework of modal regression for heavy-tailed responses. An efficient expectation-maximization algorithm is employed to expedite parameter estimation. A test statistic is constructed to exploit the shape of the model error distribution to effectively separate informative covariates from unimportant ones. Through simulations, we demonstrate and evaluate the efficacy of the proposed method in identifying important covariates in the presence of non-Gaussian model errors. Finally, we apply the proposed method to analyze two datasets arising in genetic and epigenetic studies.

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Nonparametric regression for a circular response with error-in-covariate

This study considers regression analysis of a circular response with an error-prone linear covariate. Starting with an existing estimator of the circular regression function that assumes error-free covariate, three approaches are proposed to revise this estimator, leading to three nonparametric estimators for the circular regression function accounting for measurement error. The proposed estimators are intrinsically connected through some deconvoluting operator that is exploited differently in different estimators. Moreover, a new bandwidth selection method is developed that is more computationally efficient than an existing method well-received in the context of tuning parameter selection in the presence of measurement error. The efficacy of these new estimators and their relative strengths are demonstrated through a thorough investigation of their asymptotic properties and extensive empirical study of their finite-sample performance.

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Debiased inference in error-in-variable problems with non-Gaussian measurement error

We consider drawing statistical inferences based on data subject to non-Gaussian measurement error. Unlike most existing methods developed under the assumption of Gaussian measurement error, the proposed strategy exploits hypercomplex numbers to reduce bias in naive estimation that ignores non-Gaussian measurement error. We apply this new method to several widely applicable parametric regression models with error-prone covariates, and kernel density estimation using error-contaminated data. The efficacy of this method in bias reduction is demonstrated in simulation studies and a real-life application in sports analytics.

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Post-selection Inference in Regression Models for Group Testing Data

We develop methodology for valid inference after variable selection in logistic regression when the responses are partially observed, that is, when one observes a set of error-prone testing outcomes instead of the true values of the responses. Aiming at selecting important covariates while accounting for missing information in the response data, we apply the expectation-maximization algorithm to compute maximum likelihood estimators subject to LASSO penalization. Subsequent to variable selection, we make inferences on the selected covariate effects by extending post-selection inference methodology based on the polyhedral lemma. Empirical evidence from our extensive simulation study suggests that our post-selection inference results are more reliable than those from naive inference methods that use the same data to perform variable selection and inference without adjusting for variable selection.

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Regression analysis of elliptically symmetric direction data

A comprehensive toolkit is developed for regression analysis of directional data based on a flexible class of angular Gaussian distributions. Informative testing procedures for isotropy and covariate effects on the directional response are proposed. Moreover, a prediction region that achieves the smallest volume in a class of ellipsoidal prediction regions of the same coverage probability is constructed. The efficacy of these inference procedures is demonstrated in simulation experiments. Finally, this new toolkit is used to analyze directional data originating from a hydrology study and a bioinformatics application.

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Parametric Modal Regression with Error in Covariates

An inference procedure is proposed to provide consistent estimators of parameters in a modal regression model with a covariate prone to measurement error. A score-based diagnostic tool exploiting parametric bootstrap is developed to assess adequacy of parametric assumptions imposed on the regression model. The proposed estimation method and diagnostic tool are applied to synthetic data generated from simulation experiments and data from real-world applications to demonstrate their implementation and performance. These empirical examples illustrate the importance of adequately accounting for measurement error in the error-prone covariate when inferring the association between a response and covariates based on a modal regression model that is especially suitable for skewed and heavy-tailed response data.

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Bayesian Modal Regression based on Mixture Distributions

Compared to mean regression and quantile regression, the literature on modal regression is very sparse. A unifying framework for Bayesian modal regression is proposed, based on a family of unimodal distributions indexed by the mode, along with other parameters that allow for flexible shapes and tail behaviors. Sufficient conditions for posterior propriety under an improper prior on the mode parameter are derived. Following prior elicitation, regression analysis of simulated data and datasets from several real-life applications are conducted. Besides drawing inference for covariate effects that are easy to interpret, prediction and model selection under the proposed Bayesian modal regression framework are also considered. Evidence from these analyses suggest that the proposed inference procedures are very robust to outliers, enabling one to discover interesting covariate effects missed by mean or median regression, and to construct much tighter prediction intervals than those from mean or median regression. Computer programs for implementing the proposed Bayesian modal regression are available at https://github.com/rh8liuqy/Bayesian_modal_regression.

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The flexible Gumbel distribution: A new model for inference about the mode

A new unimodal distribution family indexed by the mode and three other parameters is derived from a mixture of a Gumbel distribution for the maximum and a Gumbel distribution for the minimum. Properties of the proposed distribution are explored, including model identifiability and flexibility in capturing heavy-tailed data that exhibit different directions of skewness over a wide range. Both frequentist and Bayesian methods are developed to infer parameters in the new distribution. Simulation studies are conducted to demonstrate satisfactory performance of both methods. By fitting the proposed model to simulated data and data from an application in hydrology, it is shown that the proposed flexible distribution is especially suitable for data containing extreme values in either direction, with the mode being a location parameter of interest. Using the proposed unimodal distribution, one can easily formulate a regression model concerning the mode of a response given covariates. We apply this model to data from an application in criminology to reveal interesting data features that are obscured by outliers. Computer programs for implementing all considered inference methods in the study are available at https://github.com/rh8liuqy/flexible_Gumbel.

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Elliptically symmetric distributions for directional data of arbitrary dimension

We formulate a class of angular Gaussian distributions that allows different degrees of isotropy for directional random variables of arbitrary dimension. Through a series of novel reparameterization, this distribution family is indexed by parameters with meaningful statistical interpretations that can range over the entire real space of an adequate dimension. The new parameterization greatly simplifies maximum likelihood estimation of all model parameters, which in turn leads to theoretically sound and numerically stable inference procedures to infer key features of the distribution. Byproducts from the likelihood-based inference are used to develop graphical and numerical diagnostic tools for assessing goodness of fit of this distribution in a data application. Simulation study and application to data from a hydrogeology study are used to demonstrate implementation and performance of the inference procedures and diagnostics methods.

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Parametric mode regression for bounded responses

We propose new parametric frameworks of regression analysis with the conditional mode of a bounded response as the focal point of interest. Covariate effects estimation and prediction based on the maximum likelihood method under two new classes of regression models are demonstrated. We also develop graphical and numerical diagnostic tools to detect various sources of model misspecification. Predictions based on different central tendency measures inferred using various regression models are compared using synthetic data in simulations. Finally, we conduct regression analysis for data from the Alzheimer's Disease Neuroimaging Initiative to demonstrate practical implementation of the proposed methods. Supplementary materials that contain technical details, and additional simulation and data analysis results are available online.

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Local polynomial regression for pooled response data

We propose local polynomial estimators for the conditional mean of a continuous response when only pooled response data are collected under different pooling designs. Asymptotic properties of these estimators are investigated and compared. Extensive simulation studies are carried out to compare finite sample performance of the proposed estimators under various model settings and pooling strategies. We apply the proposed local polynomial regression methods to two real-life applications to illustrate practical implementation and performance of the estimators for the mean function.

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Corrected score methods for estimating Bayesian networks with error-prone nodes

Motivated by inferring cellular signaling networks using noisy flow cytometry data, we develop procedures to draw inference for Bayesian networks based on error-prone data. Two methods for inferring causal relationships between nodes in a network are proposed based on penalized estimation methods that account for measurement error and encourage sparsity. We discuss consistency of the proposed network estimators and develop an approach for selecting the tuning parameter in the penalized estimation methods. Empirical studies are carried out to compare the proposed methods and a naive method that ignores measurement error with applications to synthetic data and to single cell flow cytometry data.

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Conditional density estimation with covariate measurement error

We consider estimating the density of a response conditioning on an error-prone covariate. Motivated by two existing kernel density estimators in the absence of covariate measurement error, we propose a method to correct the existing estimators for measurement error. Asymptotic properties of the resultant estimators under different types of measurement error distributions are derived. Moreover, we adjust bandwidths readily available from existing bandwidth selection methods developed for error-free data to obtain bandwidths for the new estimators. Extensive simulation studies are carried out to compare the proposed estimators with naive estimators that ignore measurement error, which also provide empirical evidence for the effectiveness of the proposed bandwidth selection methods. A real-life data example is used to illustrate implementation of these methods under practical scenarios. An R package, lpme, is developed for implementing all considered methods, which we demonstrate via an R code example in Appendix H.

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Bandwidth selection for nonparametric modal regression

In the context of estimating local modes of a conditional density based on kernel density estimators, we show that existing bandwidth selection methods developed for kernel density estimation are unsuitable for mode estimation. We propose two methods to select bandwidths tailored for mode estimation in the regression setting. Numerical studies using synthetic data and a real-life data set are carried out to demonstrate the performance of the proposed methods in comparison with several well received bandwidth selection methods for density estimation.

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An alternative local polynomial estimator for the error-in-variables problem

We consider the problem of estimating a regression function when a covariate is measured with error. Using the local polynomial estimator of Delaigle, Fan, and Carroll (2009) as a benchmark, we propose an alternative way of solving the problem without transforming the kernel function. The asymptotic properties of the alternative estimator are rigorously studied. A detailed implementing algorithm and a computationally efficient bandwidth selection procedure are also provided. The proposed estimator is compared with the existing local polynomial estimator via extensive simulations and an application to the motorcycle crash data. The results show that the new estimator can be less biased than the existing estimator and is numerically more stable.

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Nonparametric modal regression in the presence of measurement error

In the context of regressing a response $Y$ on a predictor $X$, we consider estimating the local modes of the distribution of $Y$ given $X=x$ when $X$ is prone to measurement error. We propose two nonparametric estimation methods, with one based on estimating the joint density of $(X, Y)$ in the presence of measurement error, and the other built upon estimating the conditional density of $Y$ given $X=x$ using error-prone data. We study the asymptotic properties of each proposed mode estimator, and provide implementation details including the mean-shift algorithm for mode seeking and bandwidth selection. Numerical studies are presented to compare the proposed methods with an existing mode estimation method developed for error-free data naively applied to error-prone data.

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Bayesian registration of functions and curves

Bayesian analysis of functions and curves is considered, where warping and other geometrical transformations are often required for meaningful comparisons. We focus on two applications involving the classification of mouse vertebrae shape outlines and the alignment of mass spectrometry data in proteomics. The functions and curves of interest are represented using the recently introduced square root velocity function, which enables a warping invariant elastic distance to be calculated in a straightforward manner. We distinguish between various spaces of interest: the original space, the ambient space after standardizing, and the quotient space after removing a group of transformations. Using Gaussian process models in the ambient space and Dirichlet priors for the warping functions, we explore Bayesian inference for curves and functions. Markov chain Monte Carlo algorithms are introduced for simulating from the posterior, including simulated tempering for multimodal posteriors. We also compare ambient and quotient space estimators for mean shape, and explain their frequent similarity in many practical problems using a Laplace approximation. A simulation study is carried out, as well as shape classification of the mouse vertebra outlines and practical alignment of the mass spectrometry functions.

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