arXiv subjects

Xiaofan Zhang

Publications and source records attributed to Xiaofan Zhang.

At least 91 records · Page 5Linked to original sources

arXiv2023

MidMed: Towards Mixed-Type Dialogues for Medical Consultation

Most medical dialogue systems assume that patients have clear goals (medicine querying, surgical operation querying, etc.) before medical consultation. However, in many real scenarios, due to the lack of medical knowledge, it is usually difficult for patients to determine clear goals with all necessary slots. In this paper, we identify this challenge as how to construct medical consultation dialogue systems to help patients clarify their goals. To mitigate this challenge, we propose a novel task and create a human-to-human mixed-type medical consultation dialogue corpus, termed MidMed, covering five dialogue types: task-oriented dialogue for diagnosis, recommendation, knowledge-grounded dialogue, QA, and chitchat. MidMed covers four departments (otorhinolaryngology, ophthalmology, skin, and digestive system), with 8,175 dialogues. Furthermore, we build baselines on MidMed and propose an instruction-guiding medical dialogue generation framework, termed InsMed, to address this task. Experimental results show the effectiveness of InsMed.

cs.CL↗

arXiv2023

Augmenting Hessians with Inter-Layer Dependencies for Mixed-Precision Post-Training Quantization

Efficiently serving neural network models with low latency is becoming more challenging due to increasing model complexity and parameter count. Model quantization offers a solution which simultaneously reduces memory footprint and compute requirements. However, aggressive quantization may lead to an unacceptable loss in model accuracy owing to differences in sensitivity to numerical imperfection across different layers in the model. To address this challenge, we propose a mixed-precision post training quantization (PTQ) approach that assigns different numerical precisions to tensors in a network based on their specific needs, for a reduced memory footprint and improved latency while preserving model accuracy. Previous works rely on layer-wise Hessian information to determine numerical precision, but as we demonstrate, Hessian estimation is typically insufficient in determining an effective ordering of layer sensitivities. We address this by augmenting the estimated Hessian with additional information to capture inter-layer dependencies. We demonstrate that this consistently improves PTQ performance along the accuracy-latency Pareto frontier across multiple models. Our method combines second-order information and inter-layer dependencies to guide a bisection search, finding quantization configurations within a user-configurable model accuracy degradation range. We evaluate the effectiveness of our method on the ResNet50, MobileNetV2, and BERT models. Our experiments demonstrate latency reductions compared to a 16-bit baseline of $25.48\%$, $21.69\%$, and $33.28\%$ respectively, while maintaining model accuracy to within $99.99\%$ of the baseline model.

cs.LG↗

arXiv2023

WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image

Whole abdominal organ segmentation is important in diagnosing abdomen lesions, radiotherapy, and follow-up. However, oncologists' delineating all abdominal organs from 3D volumes is time-consuming and very expensive. Deep learning-based medical image segmentation has shown the potential to reduce manual delineation efforts, but it still requires a large-scale fine annotated dataset for training, and there is a lack of large-scale datasets covering the whole abdomen region with accurate and detailed annotations for the whole abdominal organ segmentation. In this work, we establish a new large-scale \textit{W}hole abdominal \textit{OR}gan \textit{D}ataset (\textit{WORD}) for algorithm research and clinical application development. This dataset contains 150 abdominal CT volumes (30495 slices). Each volume has 16 organs with fine pixel-level annotations and scribble-based sparse annotations, which may be the largest dataset with whole abdominal organ annotation. Several state-of-the-art segmentation methods are evaluated on this dataset. And we also invited three experienced oncologists to revise the model predictions to measure the gap between the deep learning method and oncologists. Afterwards, we investigate the inference-efficient learning on the WORD, as the high-resolution image requires large GPU memory and a long inference time in the test stage. We further evaluate the scribble-based annotation-efficient learning on this dataset, as the pixel-wise manual annotation is time-consuming and expensive. The work provided a new benchmark for the abdominal multi-organ segmentation task, and these experiments can serve as the baseline for future research and clinical application development.

eess.IV↗

arXiv2023

Mixed Precision Post Training Quantization of Neural Networks with Sensitivity Guided Search

Serving large-scale machine learning (ML) models efficiently and with low latency has become challenging owing to increasing model size and complexity. Quantizing models can simultaneously reduce memory and compute requirements, facilitating their widespread access. However, for large models not all layers are equally amenable to the same numerical precision and aggressive quantization can lead to unacceptable loss in model accuracy. One approach to prevent this accuracy degradation is mixed-precision quantization, which allows different tensors to be quantized to varying levels of numerical precision, leveraging the capabilities of modern hardware. Such mixed-precision quantiztaion can more effectively allocate numerical precision to different tensors `as needed' to preserve model accuracy while reducing footprint and compute latency. In this paper, we propose a method to efficiently determine quantization configurations of different tensors in ML models using post-training mixed precision quantization. We analyze three sensitivity metrics and evaluate them for guiding configuration search of two algorithms. We evaluate our method for computer vision and natural language processing and demonstrate latency reductions of up to 27.59% and 34.31% compared to the baseline 16-bit floating point model while guaranteeing no more than 1% accuracy degradation.

cs.LG↗

arXiv2022

Compilation and Optimizations for Efficient Machine Learning on Embedded Systems

Deep Neural Networks (DNNs) have achieved great success in a variety of machine learning (ML) applications, delivering high-quality inferencing solutions in computer vision, natural language processing, and virtual reality, etc. However, DNN-based ML applications also bring much increased computational and storage requirements, which are particularly challenging for embedded systems with limited compute/storage resources, tight power budgets, and small form factors. Challenges also come from the diverse application-specific requirements, including real-time responses, high-throughput performance, and reliable inference accuracy. To address these challenges, we introduce a series of effective design methodologies, including efficient ML model designs, customized hardware accelerator designs, and hardware/software co-design strategies to enable efficient ML applications on embedded systems.

cs.LG↗

arXiv2022

Contrastive Semi-supervised Learning for Domain Adaptive Segmentation Across Similar Anatomical Structures

Convolutional Neural Networks (CNNs) have achieved state-of-the-art performance for medical image segmentation, yet need plenty of manual annotations for training. Semi-Supervised Learning (SSL) methods are promising to reduce the requirement of annotations, but their performance is still limited when the dataset size and the number of annotated images are small. Leveraging existing annotated datasets with similar anatomical structures to assist training has a potential for improving the model's performance. However, it is further challenged by the cross-anatomy domain shift due to the different appearance and even imaging modalities from the target structure. To solve this problem, we propose Contrastive Semi-supervised learning for Cross Anatomy Domain Adaptation (CS-CADA) that adapts a model to segment similar structures in a target domain, which requires only limited annotations in the target domain by leveraging a set of existing annotated images of similar structures in a source domain. We use Domain-Specific Batch Normalization (DSBN) to individually normalize feature maps for the two anatomical domains, and propose a cross-domain contrastive learning strategy to encourage extracting domain invariant features. They are integrated into a Self-Ensembling Mean-Teacher (SE-MT) framework to exploit unlabeled target domain images with a prediction consistency constraint. Extensive experiments show that our CS-CADA is able to solve the challenging cross-anatomy domain shift problem, achieving accurate segmentation of coronary arteries in X-ray images with the help of retinal vessel images and cardiac MR images with the help of fundus images, respectively, given only a small number of annotations in the target domain.

cs.CV↗

arXiv2022

A new post-hoc flat field measurement method for the Solar X-ray and Extreme Ultraviolet Imager onboard the Fengyun-3E satellite

The extreme ultraviolet (EUV) observations are widely used in solar activity research and space weather forecasting since they can observe both the solar eruptions and the source regions of the solar wind. Flat field processing is indispensable to remove the instrumental non-uniformity of a solar EUV imager in producing high-quality scientific data from original observed data. Fengyun-3E (FY-3E) is a meteorological satellite operated in Sun-synchronous orbit, and the routine EUV imaging data from the Solar X-ray and Extreme Ultraviolet Imager (X-EUVI) onboard FY-3E has the characteristics of concentric rotation. Taking advantage of the concentric rotation, we propose a post-hoc flat field measurement method for its EUV 195 channel in this paper. This method removes small-scale and time-varying component of the coronal activities by taking the median value for each pixel along the time axis of a concentric rotation data cube, and then derives large-scale and invariable component of the quiet coronal radiation, and finally generates a flat field image. Analysis shows that our method is able to measure the instrumental spot-like non-uniformity possibly caused by contamination on the detector, which mostly disappears after the in-orbit self-cleaning process. It can also measure the quasi-periodic grid-like non-uniformity, possibly from the obscuration of the support mesh on the rear filter. After flat field correction, these instrumental non-uniformities from the original data are effectively removed. X-EUVI 195 data after dark and flat field corrections are consistent with the 193 channel data from SDO/AIA, verifying the suitability of the method. Our method is not only suitable for FY-3E/X-EUVI but also a candidate method for the flat field measurement of future solar EUV telescopes.

astro-ph.SR↗

arXiv2022

SiamVGG: Visual Tracking using Deeper Siamese Networks

Recently, we have seen a rapid development of Deep Neural Network (DNN) based visual tracking solutions. Some trackers combine the DNN-based solutions with Discriminative Correlation Filters (DCF) to extract semantic features and successfully deliver the state-of-the-art tracking accuracy. However, these solutions are highly compute-intensive, which require long processing time, resulting unsecured real-time performance. To deliver both high accuracy and reliable real-time performance, we propose a novel tracker called SiamVGG\footnote{https://github.com/leeyeehoo/SiamVGG}. It combines a Convolutional Neural Network (CNN) backbone and a cross-correlation operator, and takes advantage of the features from exemplary images for more accurate object tracking. The architecture of SiamVGG is customized from VGG-16 with the parameters shared by both exemplary images and desired input video frames. We demonstrate the proposed SiamVGG on OTB-2013/50/100 and VOT 2015/2016/2017 datasets with the state-of-the-art accuracy while maintaining a decent real-time performance of 50 FPS running on a GTX 1080Ti. Our design can achieve 2% higher Expected Average Overlap (EAO) compared to the ECO and C-COT in VOT2017 Challenge.

cs.CV↗

arXiv2022

Contrastive Domain Disentanglement for Generalizable Medical Image Segmentation

Efficiently utilizing discriminative features is crucial for convolutional neural networks to achieve remarkable performance in medical image segmentation and is also important for model generalization across multiple domains, where letting model recognize domain-specific and domain-invariant information among multi-site datasets is a reasonable strategy for domain generalization. Unfortunately, most of the recent disentangle networks are not directly adaptable to unseen-domain datasets because of the limitations of offered data distribution. To tackle this deficiency, we propose Contrastive Domain Disentangle (CDD) network for generalizable medical image segmentation. We first introduce a disentangle network to decompose medical images into an anatomical representation factor and a modality representation factor. Then, a style contrastive loss is proposed to encourage the modality representations from the same domain to distribute as close as possible while different domains are estranged from each other. Finally, we propose a domain augmentation strategy that can randomly generate new domains for model generalization training. Experimental results on multi-site fundus image datasets for optic cup and disc segmentation show that the CDD has good model generalization. Our proposed CDD outperforms several state-of-the-art methods in domain generalizable segmentation.

cs.CV↗

arXiv2022

AutoDistill: an End-to-End Framework to Explore and Distill Hardware-Efficient Language Models

Recently, large pre-trained models have significantly improved the performance of various Natural LanguageProcessing (NLP) tasks but they are expensive to serve due to long serving latency and large memory usage. To compress these models, knowledge distillation has attracted an increasing amount of interest as one of the most effective methods for model compression. However, existing distillation methods have not yet addressed the unique challenges of model serving in datacenters, such as handling fast evolving models, considering serving performance, and optimizing for multiple objectives. To solve these problems, we propose AutoDistill, an end-to-end model distillation framework integrating model architecture exploration and multi-objective optimization for building hardware-efficient NLP pre-trained models. We use Bayesian Optimization to conduct multi-objective Neural Architecture Search for selecting student model architectures. The proposed search comprehensively considers both prediction accuracy and serving latency on target hardware. The experiments on TPUv4i show the finding of seven model architectures with better pre-trained accuracy (up to 3.2% higher) and lower inference latency (up to 1.44x faster) than MobileBERT. By running downstream NLP tasks in the GLUE benchmark, the model distilled for pre-training by AutoDistill with 28.5M parameters achieves an 81.69 average score, which is higher than BERT_BASE, DistillBERT, TinyBERT, NAS-BERT, and MobileBERT. The most compact model found by AutoDistill contains only 20.6M parameters but still outperform BERT_BASE(109M), DistillBERT(67M), TinyBERT(67M), and MobileBERT(25.3M) regarding the average GLUE score. By evaluating on SQuAD, a model found by AutoDistill achieves an 88.4% F1 score with 22.8M parameters, which reduces parameters by more than 62% while maintaining higher accuracy than DistillBERT, TinyBERT, and NAS-BERT.

cs.LG↗

arXiv2021

EH-DNAS: End-to-End Hardware-aware Differentiable Neural Architecture Search

In hardware-aware Differentiable Neural Architecture Search (DNAS), it is challenging to compute gradients of hardware metrics to perform architecture search. Existing works rely on linear approximations with limited support to customized hardware accelerators. In this work, we propose End-to-end Hardware-aware DNAS (EH-DNAS), a seamless integration of end-to-end hardware benchmarking, and fully automated DNAS to deliver hardware-efficient deep neural networks on various platforms, including Edge GPUs, Edge TPUs, Mobile CPUs, and customized accelerators. Given a desired hardware platform, we propose to learn a differentiable model predicting the end-to-end hardware performance of neural network architectures for DNAS. We also introduce E2E-Perf, an end-to-end hardware benchmarking tool for customized accelerators. Experiments on CIFAR10 and ImageNet show that EH-DNAS improves the hardware performance by an average of $1.4\times$ on customized accelerators and $1.6\times$ on existing hardware processors while maintaining the classification accuracy.

cs.LG↗

arXiv2021

One-shot Weakly-Supervised Segmentation in Medical Images

Deep neural networks usually require accurate and a large number of annotations to achieve outstanding performance in medical image segmentation. One-shot segmentation and weakly-supervised learning are promising research directions that lower labeling effort by learning a new class from only one annotated image and utilizing coarse labels instead, respectively. Previous works usually fail to leverage the anatomical structure and suffer from class imbalance and low contrast problems. Hence, we present an innovative framework for 3D medical image segmentation with one-shot and weakly-supervised settings. Firstly a propagation-reconstruction network is proposed to project scribbles from annotated volume to unlabeled 3D images based on the assumption that anatomical patterns in different human bodies are similar. Then a dual-level feature denoising module is designed to refine the scribbles based on anatomical- and pixel-level features. After expanding the scribbles to pseudo masks, we could train a segmentation model for the new class with the noisy label training strategy. Experiments on one abdomen and one head-and-neck CT dataset show the proposed method obtains significant improvement over the state-of-the-art methods and performs robustly even under severe class imbalance and low contrast.

eess.IV↗

arXiv2021

Scaling Up Hardware Accelerator Verification using A-QED with Functional Decomposition

Hardware accelerators (HAs) are essential building blocks for fast and energy-efficient computing systems. Accelerator Quick Error Detection (A-QED) is a recent formal technique which uses Bounded Model Checking for pre-silicon verification of HAs. A-QED checks an HA for self-consistency, i.e., whether identical inputs within a sequence of operations always produce the same output. Under modest assumptions, A-QED is both sound and complete. However, as is well-known, large design sizes significantly limit the scalability of formal verification, including A-QED. We overcome this scalability challenge through a new decomposition technique for A-QED, called A-QED with Decomposition (A-QED$^2$). A-QED$^2$ systematically decomposes an HA into smaller, functional sub-modules, called sub-accelerators, which are then verified independently using A-QED. We prove completeness of A-QED$^2$; in particular, if the full HA under verification contains a bug, then A-QED$^2$ ensures detection of that bug during A-QED verification of the corresponding sub-accelerators. Results on over 100 (buggy) versions of a wide variety of HAs with millions of logic gates demonstrate the effectiveness and practicality of A-QED$^2$.

cs.LO↗

arXiv2021

Being-ahead: Benchmarking and Exploring Accelerators for Hardware-Efficient AI Deployment

Customized hardware accelerators have been developed to provide improved performance and efficiency for DNN inference and training. However, the existing hardware accelerators may not always be suitable for handling various DNN models as their architecture paradigms and configuration tradeoffs are highly application-specific. It is important to benchmark the accelerator candidates in the earliest stage to gather comprehensive performance metrics and locate the potential bottlenecks. Further demands also emerge after benchmarking, which require adequate solutions to address the bottlenecks and improve the current designs for targeted workloads. To achieve these goals, in this paper, we leverage an automation tool called DNNExplorer for benchmarking customized DNN hardware accelerators and exploring novel accelerator designs with improved performance and efficiency. Key features include (1) direct support to popular machine learning frameworks for DNN workload analysis and accurate analytical models for fast accelerator benchmarking; (2) a novel accelerator design paradigm with high-dimensional design space support and fine-grained adjustability to overcome the existing design drawbacks; and (3) a design space exploration (DSE) engine to generate optimized accelerators by considering targeted AI workloads and available hardware resources. Results show that accelerators adopting the proposed novel paradigm can deliver up to 4.2X higher throughput (GOP/s) than the state-of-the-art pipeline design in DNNBuilder and up to 2.0X improved efficiency than the recently published generic design in HybridDNN given the same DNN model and resource budgets. With DNNExplorer's benchmarking and exploration features, we can be ahead at building and optimizing customized AI accelerators and enable more efficient AI applications.

cs.AR↗

arXiv2021

DNNExplorer: A Framework for Modeling and Exploring a Novel Paradigm of FPGA-based DNN Accelerator

Existing FPGA-based DNN accelerators typically fall into two design paradigms. Either they adopt a generic reusable architecture to support different DNN networks but leave some performance and efficiency on the table because of the sacrifice of design specificity. Or they apply a layer-wise tailor-made architecture to optimize layer-specific demands for computation and resources but loose the scalability of adaptation to a wide range of DNN networks. To overcome these drawbacks, this paper proposes a novel FPGA-based DNN accelerator design paradigm and its automation tool, called DNNExplorer, to enable fast exploration of various accelerator designs under the proposed paradigm and deliver optimized accelerator architectures for existing and emerging DNN networks. Three key techniques are essential for DNNExplorer's improved performance, better specificity, and scalability, including (1) a unique accelerator design paradigm with both high-dimensional design space support and fine-grained adjustability, (2) a dynamic design space to accommodate different combinations of DNN workloads and targeted FPGAs, and (3) a design space exploration (DSE) engine to generate optimized accelerator architectures following the proposed paradigm by simultaneously considering both FPGAs' computation and memory resources and DNN networks' layer-wise characteristics and overall complexity. Experimental results show that, for the same FPGAs, accelerators generated by DNNExplorer can deliver up to 4.2x higher performances (GOP/s) than the state-of-the-art layer-wise pipelined solutions generated by DNNBuilder for VGG-like DNN with 38 CONV layers. Compared to accelerators with generic reusable computation units, DNNExplorer achieves up to 2.0x and 4.4x DSP efficiency improvement than a recently published accelerator design from academia (HybridDNN) and a commercial DNN accelerator IP (Xilinx DPU), respectively.

cs.AR↗

arXiv2021

F-CAD: A Framework to Explore Hardware Accelerators for Codec Avatar Decoding

Creating virtual avatars with realistic rendering is one of the most essential and challenging tasks to provide highly immersive virtual reality (VR) experiences. It requires not only sophisticated deep neural network (DNN) based codec avatar decoders to ensure high visual quality and precise motion expression, but also efficient hardware accelerators to guarantee smooth real-time rendering using lightweight edge devices, like untethered VR headsets. Existing hardware accelerators, however, fail to deliver sufficient performance and efficiency targeting such decoders which consist of multi-branch DNNs and require demanding compute and memory resources. To address these problems, we propose an automation framework, called F-CAD (Facebook Codec avatar Accelerator Design), to explore and deliver optimized hardware accelerators for codec avatar decoding. Novel technologies include 1) a new accelerator architecture to efficiently handle multi-branch DNNs; 2) a multi-branch dynamic design space to enable fine-grained architecture configurations; and 3) an efficient architecture search for picking the optimized hardware design based on both application-specific demands and hardware resource constraints. To the best of our knowledge, F-CAD is the first automation tool that supports the whole design flow of hardware acceleration of codec avatar decoders, allowing joint optimization on decoder designs in popular machine learning frameworks and corresponding customized accelerator design with cycle-accurate evaluation. Results show that the accelerators generated by F-CAD can deliver up to 122.1 frames per second (FPS) and 91.6% hardware efficiency when running the latest codec avatar decoder. Compared to the state-of-the-art designs, F-CAD achieves 4.0X and 2.8X higher throughput, 62.5% and 21.2% higher efficiency than DNNBuilder and HybridDNN by targeting the same hardware device.

cs.AR↗

arXiv2020

Effective Algorithm-Accelerator Co-design for AI Solutions on Edge Devices

High quality AI solutions require joint optimization of AI algorithms, such as deep neural networks (DNNs), and their hardware accelerators. To improve the overall solution quality as well as to boost the design productivity, efficient algorithm and accelerator co-design methodologies are indispensable. In this paper, we first discuss the motivations and challenges for the Algorithm/Accelerator co-design problem and then provide several effective solutions. Especially, we highlight three leading works of effective co-design methodologies: 1) the first simultaneous DNN/FPGA co-design method; 2) a bi-directional lightweight DNN and accelerator co-design method; 3) a differentiable and efficient DNN and accelerator co-search method. We demonstrate the effectiveness of the proposed co-design approaches using extensive experiments on both FPGAs and GPUs, with comparisons to existing works. This paper emphasizes the importance and efficacy of algorithm-accelerator co-design and calls for more research breakthroughs in this interesting and demanding area.

cs.AR↗

arXiv2020

Large-scale Gastric Cancer Screening and Localization Using Multi-task Deep Neural Network

Gastric cancer is one of the most common cancers, which ranks third among the leading causes of cancer death. Biopsy of gastric mucosa is a standard procedure in gastric cancer screening test. However, manual pathological inspection is labor-intensive and time-consuming. Besides, it is challenging for an automated algorithm to locate the small lesion regions in the gigapixel whole-slide image and make the decision correctly.To tackle these issues, we collected large-scale whole-slide image dataset with detailed lesion region annotation and designed a whole-slide image analyzing framework consisting of 3 networks which could not only determine the screening result but also present the suspicious areas to the pathologist for reference. Experiments demonstrated that our proposed framework achieves sensitivity of 97.05% and specificity of 92.72% in screening task and Dice coefficient of 0.8331 in segmentation task. Furthermore, we tested our best model in real-world scenario on 10,315 whole-slide images collected from 4 medical centers.

eess.IV↗