arXiv subjects

Xiaoling Hu

Publications and source records attributed to Xiaoling Hu.

At least 37 records · Page 2Linked to original sources

arXiv2025

Hierarchical Uncertainty Estimation for Learning-based Registration in Neuroimaging

Over recent years, deep learning based image registration has achieved impressive accuracy in many domains, including medical imaging and, specifically, human neuroimaging with magnetic resonance imaging (MRI). However, the uncertainty estimation associated with these methods has been largely limited to the application of generic techniques (e.g., Monte Carlo dropout) that do not exploit the peculiarities of the problem domain, particularly spatial modeling. Here, we propose a principled way to propagate uncertainties (epistemic or aleatoric) estimated at the level of spatial location by these methods, to the level of global transformation models, and further to downstream tasks. Specifically, we justify the choice of a Gaussian distribution for the local uncertainty modeling, and then propose a framework where uncertainties spread across hierarchical levels, depending on the choice of transformation model. Experiments on publicly available data sets show that Monte Carlo dropout correlates very poorly with the reference registration error, whereas our uncertainty estimates correlate much better. Crucially, the results also show that uncertainty-aware fitting of transformations improves the registration accuracy of brain MRI scans. Finally, we illustrate how sampling from the posterior distribution of the transformations can be used to propagate uncertainties to downstream neuroimaging tasks. Code is available at: https://github.com/HuXiaoling/Regre4Regis.

cs.CV↗

arXiv2025

Poststroke rehabilitative mechanisms in individualized fatigue level-controlled treadmill training -- a Rat Model Study

Individualized training improved post-stroke motor function rehabilitation efficiency. However, the mechanisms of how individualized training facilitates recovery is not clear. This study explored the cortical and corticomuscular rehabilitative effects in post-stroke motor function recovery during individualized training. Sprague-Dawley rats with intracerebral hemorrhage (ICH) were randomly distributed into two groups: forced training (FOR-T, n=13) and individualized fatigue-controlled training (FAT-C, n=13) to receive training respectively from day 2 to day 14 post-stroke. The FAT-C group exhibited superior motor function recovery and less central fatigue compared to the FOR-T group. EEG PSD slope analysis demonstrated a better inter-hemispheric balance in FAT-C group compare to the FOR-T group. The dCMC analysis indicated that training-induced fatigue led to a short-term down-regulation of descending corticomuscular coherence (dCMC) and an up-regulation of ascending dCMC. In the long term, excessive fatigue hindered the recovery of descending control in the affected hemisphere. The individualized strategy of peripheral fatigue-controlled training achieved better motor function recovery, which could be attributed to the mitigation of central fatigue, optimization of inter-hemispheric balance and enhancement of descending control in the affected hemisphere.

eess.SP↗

arXiv2024

Movable Antenna Array Aided Ultra Reliable Covert Communications

In this paper, we construct a framework of the movable antenna (MA) aided covert communication shielded by the general noise uncertainty for the first time. According to the analysis performance on the derived closed-form expressions of the sum of the probabilities of the detection errors and the communication outage probability, the perfect covertness and the ultra reliability can be achieved by adjusting the antenna position in the MA array. Then, we formulate the communication covertness maximization problem with the constraints of the ultra reliability and the independent discrete movable position to optimize the transmitter's parameter. With the maximal ratio transmitting (MRT) design for the beamforming, we solve the closed-form optimal information transmit power and design a lightweight discrete projected gradient descent (DPGD) algorithm to determine the optimal antenna position. The numerical results show that the optimal achievable covertness and the feasible region of the steering angle with the MA array is significant larger than the one with the fixed-position antenna (FPA) array.

cs.IT↗

arXiv2024

Adversarial Vessel-Unveiling Semi-Supervised Segmentation for Retinopathy of Prematurity Diagnosis

Accurate segmentation of retinal images plays a crucial role in aiding ophthalmologists in diagnosing retinopathy of prematurity (ROP) and assessing its severity. However, due to their underdeveloped, thinner vessels, manual annotation in infant fundus images is very complex, and this presents challenges for fully supervised learning. To address the scarcity of annotations, we propose a semi supervised segmentation framework designed to advance ROP studies without the need for extensive manual vessel annotation. Unlike previous methods that rely solely on limited labeled data, our approach leverages teacher student learning by integrating two powerful components: an uncertainty weighted vessel unveiling module and domain adversarial learning. The vessel unveiling module helps the model effectively reveal obscured and hard to detect vessel structures, while adversarial training aligns feature representations across different domains, ensuring robust and generalizable vessel segmentations. We validate our approach on public datasets (CHASEDB, STARE) and an in-house ROP dataset, demonstrating its superior performance across multiple evaluation metrics. Additionally, we extend the model's utility to a downstream task of ROP multi-stage classification, where vessel masks extracted by our segmentation model improve diagnostic accuracy. The promising results in classification underscore the model's potential for clinical application, particularly in early-stage ROP diagnosis and intervention. Overall, our work offers a scalable solution for leveraging unlabeled data in pediatric ophthalmology, opening new avenues for biomarker discovery and clinical research.

cs.CV↗

arXiv2024

Hard Negative Sample Mining for Whole Slide Image Classification

Weakly supervised whole slide image (WSI) classification is challenging due to the lack of patch-level labels and high computational costs. State-of-the-art methods use self-supervised patch-wise feature representations for multiple instance learning (MIL). Recently, methods have been proposed to fine-tune the feature representation on the downstream task using pseudo labeling, but mostly focusing on selecting high-quality positive patches. In this paper, we propose to mine hard negative samples during fine-tuning. This allows us to obtain better feature representations and reduce the training cost. Furthermore, we propose a novel patch-wise ranking loss in MIL to better exploit these hard negative samples. Experiments on two public datasets demonstrate the efficacy of these proposed ideas. Our codes are available at https://github.com/winston52/HNM-WSI

cs.CV↗

arXiv2024

Semi-Supervised Contrastive VAE for Disentanglement of Digital Pathology Images

Despite the strong prediction power of deep learning models, their interpretability remains an important concern. Disentanglement models increase interpretability by decomposing the latent space into interpretable subspaces. In this paper, we propose the first disentanglement method for pathology images. We focus on the task of detecting tumor-infiltrating lymphocytes (TIL). We propose different ideas including cascading disentanglement, novel architecture, and reconstruction branches. We achieve superior performance on complex pathology images, thus improving the interpretability and even generalization power of TIL detection deep learning models. Our codes are available at https://github.com/Shauqi/SS-cVAE.

eess.IV↗

arXiv2024

Spatial Diffusion for Cell Layout Generation

Generative models, such as GANs and diffusion models, have been used to augment training sets and boost performances in different tasks. We focus on generative models for cell detection instead, i.e., locating and classifying cells in given pathology images. One important information that has been largely overlooked is the spatial patterns of the cells. In this paper, we propose a spatial-pattern-guided generative model for cell layout generation. Specifically, a novel diffusion model guided by spatial features and generates realistic cell layouts has been proposed. We explore different density models as spatial features for the diffusion model. In downstream tasks, we show that the generated cell layouts can be used to guide the generation of high-quality pathology images. Augmenting with these images can significantly boost the performance of SOTA cell detection methods. The code is available at https://github.com/superlc1995/Diffusion-cell.

cs.CV↗

arXiv2024

Integrated Sensing and Communication in IRS-assisted High-Mobility Systems: Design, Analysis and Optimization

In this paper, we investigate integrated sensing and communication (ISAC) in high-mobility systems with the aid of an intelligent reflecting surface (IRS). To exploit the benefits of Delay-Doppler (DD) spread caused by high mobility, orthogonal time frequency space (OTFS)-based frame structure and transmission framework are proposed. {In such a framework,} we first design a low-complexity ratio-based sensing algorithm for estimating the velocity of mobile user. Then, we analyze the performance of sensing and communication in terms of achievable mean square error (MSE) and achievable rate, respectively, and reveal the impact of key parameters. Next, with the derived performance expressions, we jointly optimize the phase shift matrix of IRS and the receive combining vector at the base station (BS) to improve the overall performance of integrated sensing and communication. Finally, extensive simulation results confirm the effectiveness of the proposed algorithms in high-mobility systems.

cs.IT↗

arXiv2024

Semi-supervised Segmentation of Histopathology Images with Noise-Aware Topological Consistency

In digital pathology, segmenting densely distributed objects like glands and nuclei is crucial for downstream analysis. Since detailed pixel-wise annotations are very time-consuming, we need semi-supervised segmentation methods that can learn from unlabeled images. Existing semi-supervised methods are often prone to topological errors, e.g., missing or incorrectly merged/separated glands or nuclei. To address this issue, we propose TopoSemiSeg, the first semi-supervised method that learns the topological representation from unlabeled histopathology images. The major challenge is for unlabeled images; we only have predictions carrying noisy topology. To this end, we introduce a noise-aware topological consistency loss to align the representations of a teacher and a student model. By decomposing the topology of the prediction into signal topology and noisy topology, we ensure that the models learn the true topological signals and become robust to noise. Extensive experiments on public histopathology image datasets show the superiority of our method, especially on topology-aware evaluation metrics. Code is available at https://github.com/Melon-Xu/TopoSemiSeg.

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arXiv2024

Wideband Beamforming with RIS: A Unified Framework via Space-Frequency Transformation

The spectrum shift from the sub-6G band to the high-frequency band has posed an ever-increasing demand on the paradigm shift from narrowband beamforming to wideband beamforming. Despite recent research efforts, the problem of wideband beamforming design is particularly challenging in reconfigurable intelligent surface (RIS)-assisted systems, due to that RIS is not capable of performing frequency-dependent phase shift, therefore inducing high signal processing complexity. In this paper, we propose a simple-yet-efficient wideband beamforming design for RIS-assisted systems, in which a transmitter sends wideband signals to a desired target, through the aid of the RIS. In our proposed design, we exploit space-frequency Fourier transformation and stationary phase method to yield an approximate closed-form solution of the RIS phase shifts which significantly reduces the signal processing complexity, compared to the existing approaches. The obtained solution is then used to generate a large and flat beampattern over the desired frequency band. Through numerical results, we validate the effectiveness of our proposed beamforming design and demonstrate how it can improve system performances in terms of communication rate and sensing resolution. Beyond generating the flat beampattern, we highlight that our proposed design is capable of mimicking any desired beampattern by matching the RIS phase shift with the amplitude modulation function, thus providing valuable insights into the design of novel wideband beamforming for RIS-assisted systems.

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arXiv2024

Registration by Regression (RbR): a framework for interpretable and flexible atlas registration

In human neuroimaging studies, atlas registration enables mapping MRI scans to a common coordinate frame, which is necessary to aggregate data from multiple subjects. Machine learning registration methods have achieved excellent speed and accuracy but lack interpretability and flexibility at test time (since their deformation model is fixed). More recently, keypoint-based methods have been proposed to tackle these issues, but their accuracy is still subpar, particularly when fitting nonlinear transforms. Here we propose Registration by Regression (RbR), a novel atlas registration framework that: is highly robust and flexible; can be trained with cheaply obtained data; and operates on a single channel, such that it can also be used as pretraining for other tasks. RbR predicts the (x, y, z) atlas coordinates for every voxel of the input scan (i.e., every voxel is a keypoint), and then uses closed-form expressions to quickly fit transforms using a wide array of possible deformation models, including affine and nonlinear (e.g., Bspline, Demons, invertible diffeomorphic models, etc.). Robustness is provided by the large number of voxels informing the registration and can be further increased by robust estimators like RANSAC. Experiments on independent public datasets show that RbR yields more accurate registration than competing keypoint approaches, over a wide range of deformation models.

cs.CV↗

arXiv2024

Detection and Multi-Parameter Estimation for NLOS Targets: An IRS-assisted Framework

Intelligent reflecting surface (IRS) has the potential to enhance sensing performance, due to its capability of reshaping the echo signals. Different from the existing literature, which has commonly focused on IRS beamforming optimization, in this paper, we pay special attention to designing effective signal processing approaches to extract sensing information from IRS-reshaped echo signals. To this end, we investigate an IRS-assisted non-line-of-sight (NLOS) target detection and multi-parameter estimation problem in orthogonal frequency division multiplexing (OFDM) systems. To address this problem, we first propose a novel detection and direction estimation framework, including a low-overhead hierarchical codebook that allows the IRS to generate three-dimensional beams with adjustable beam direction and width, a delay spectrum peak-based beam training scheme for detection and direction estimation, and a beam refinement scheme for further enhancing the accuracy of the direction estimation. Then, we propose a target range and velocity estimation scheme by extracting the delay-Doppler information from the IRS-reshaped echo signals. Numerical results demonstrate that the proposed schemes can achieve 99.7% target detection rate, a 10^{-3}-rad level direction estimation accuracy, and a 10^{-6}-m/10^{-5}-m/s level range/velocity estimation accuracy.

eess.SP↗

arXiv2024

Rethinking the fundamental performance limits of integrated sensing and communication systems

Integrated sensing and communication (ISAC) has been recognized as a key enabler and feature of future wireless networks. In the existing works analyzing the performances of ISAC, discrete-time systems were commonly assumed, which, however, overlooked the impacts of temporal, spectral, and spatial properties. To address this issue, we establish a unified information model for the band-limited continuous-time ISAC systems. In the established information model, we employ a novel sensing performance metric, called the sensing mutual information (SMI). Through analysis, we show how the SMI can be utilized as a bridge between the mutual information domain and the mean squared error (MSE) domain. In addition, we illustrate the communication mutual information (CMI)-SMI and CMI-MSE regions to identify the performance bounds of ISAC systems in practical settings and reveal the trade-off between communication and sensing performances. Moreover, via analysis and numerical results, we provide two valuable insights into the design of novel ISAC-enabled systems: i) communication prefers the waveforms of random amplitude, sensing prefers the waveforms of constant amplitude, both communication and sensing favor the waveforms of low correlations with random phases; ii) There exists a linear positive proportional relationship between the allocated time-frequency resource and the achieved communication rate/sensing MSE.

cs.IT↗

arXiv2024

Learning Topological Representations for Deep Image Understanding

In many scenarios, especially biomedical applications, the correct delineation of complex fine-scaled structures such as neurons, tissues, and vessels is critical for downstream analysis. Despite the strong predictive power of deep learning methods, they do not provide a satisfactory representation of these structures, thus creating significant barriers in scalable annotation and downstream analysis. In this dissertation, we tackle such challenges by proposing novel representations of these topological structures in a deep learning framework. We leverage the mathematical tools from topological data analysis, i.e., persistent homology and discrete Morse theory, to develop principled methods for better segmentation and uncertainty estimation, which will become powerful tools for scalable annotation.

cs.CV↗

arXiv2024

P-Count: Persistence-based Counting of White Matter Hyperintensities in Brain MRI

White matter hyperintensities (WMH) are a hallmark of cerebrovascular disease and multiple sclerosis. Automated WMH segmentation methods enable quantitative analysis via estimation of total lesion load, spatial distribution of lesions, and number of lesions (i.e., number of connected components after thresholding), all of which are correlated with patient outcomes. While the two former measures can generally be estimated robustly, the number of lesions is highly sensitive to noise and segmentation mistakes -- even when small connected components are eroded or disregarded. In this article, we present P-Count, an algebraic WMH counting tool based on persistent homology that accounts for the topological features of WM lesions in a robust manner. Using computational geometry, P-Count takes the persistence of connected components into consideration, effectively filtering out the noisy WMH positives, resulting in a more accurate count of true lesions. We validated P-Count on the ISBI2015 longitudinal lesion segmentation dataset, where it produces significantly more accurate results than direct thresholding.

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arXiv2024

Brain-ID: Learning Contrast-agnostic Anatomical Representations for Brain Imaging

Recent learning-based approaches have made astonishing advances in calibrated medical imaging like computerized tomography (CT), yet they struggle to generalize in uncalibrated modalities -- notably magnetic resonance (MR) imaging, where performance is highly sensitive to the differences in MR contrast, resolution, and orientation. This prevents broad applicability to diverse real-world clinical protocols. We introduce Brain-ID, an anatomical representation learning model for brain imaging. With the proposed "mild-to-severe" intra-subject generation, Brain-ID is robust to the subject-specific brain anatomy regardless of the appearance of acquired images (e.g., contrast, deformation, resolution, artifacts). Trained entirely on synthetic data, Brain-ID readily adapts to various downstream tasks through only one layer. We present new metrics to validate the intra- and inter-subject robustness of Brain-ID features, and evaluate their performance on four downstream applications, covering contrast-independent (anatomy reconstruction/contrast synthesis, brain segmentation), and contrast-dependent (super-resolution, bias field estimation) tasks. Extensive experiments on six public datasets demonstrate that Brain-ID achieves state-of-the-art performance in all tasks on different MRI modalities and CT, and more importantly, preserves its performance on low-resolution and small datasets. Code is available at https://github.com/peirong26/Brain-ID.

cs.CV↗

arXiv2023

Topology-Aware Uncertainty for Image Segmentation

Segmentation of curvilinear structures such as vasculature and road networks is challenging due to relatively weak signals and complex geometry/topology. To facilitate and accelerate large scale annotation, one has to adopt semi-automatic approaches such as proofreading by experts. In this work, we focus on uncertainty estimation for such tasks, so that highly uncertain, and thus error-prone structures can be identified for human annotators to verify. Unlike most existing works, which provide pixel-wise uncertainty maps, we stipulate it is crucial to estimate uncertainty in the units of topological structures, e.g., small pieces of connections and branches. To achieve this, we leverage tools from topological data analysis, specifically discrete Morse theory (DMT), to first capture the structures, and then reason about their uncertainties. To model the uncertainty, we (1) propose a joint prediction model that estimates the uncertainty of a structure while taking the neighboring structures into consideration (inter-structural uncertainty); (2) propose a novel Probabilistic DMT to model the inherent uncertainty within each structure (intra-structural uncertainty) by sampling its representations via a perturb-and-walk scheme. On various 2D and 3D datasets, our method produces better structure-wise uncertainty maps compared to existing works. Code available at https://github.com/Saumya-Gupta-26/struct-uncertainty

cs.CV↗

arXiv2023

Robust Anti-jamming Communications with DMA-Based Reconfigurable Heterogeneous Array

In the future commercial and military communication systems, anti-jamming remains a critical issue. Existing homogeneous or heterogeneous arrays with a limited degrees of freedom (DoF) and high consumption are unable to meet the requirements of communication in rapidly changing and intense jamming environments. To address these challenges, we propose a reconfigurable heterogeneous array (RHA) architecture based on dynamic metasurface antenna (DMA), which will increase the DoF and further improve anti-jamming capabilities. We propose a two-step anti-jamming scheme based on RHA, where the multipaths are estimated by an atomic norm minimization (ANM) based scheme, and then the received signal-to-interference-plus-noise ratio (SINR) is maximized by jointly designing the phase shift of each DMA element and the weights of the array elements. To solve the challenging non-convex discrete fractional problem along with the estimation error in the direction of arrival (DoA) and channel state information (CSI), we propose a robust alternative algorithm based on the S-procedure to solve the lower-bound SINR maximization problem. Simulation results demonstrate that the proposed RHA architecture and corresponding schemes have superior performance in terms of jamming immunity and robustness.

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