arXiv subjects

Xiaoning Li

Publications and source records attributed to Xiaoning Li.

8 recordsLinked to original sources

arXiv2026

SDM-Q: Cost-Aware Staged Decision-Making for Multi-Omics Classification with Deep Q-Learning

Multi-omics data provide complementary molecular characterizations of disease phenotypes and play an important role in disease diagnosis and subtype classification in precision medicine. However, acquiring complete multi-omics profiles is expensive and time-consuming, while most existing deep learning methods assume full modality availability during inference, resulting in substantial redundancy and limited practicality in clinical settings. To address this issue, we propose SDM-Q, a reinforcement learning framework for adaptive and cost-aware multi-omics classification. Specifically, multi-omics diagnosis is reformulated as a finite-horizon sequential decision problem, where the currently acquired omics modalities define the diagnostic state at each stage. An action--value function determines whether to acquire an additional modality or terminate the decision process and output the final prediction. To balance diagnostic utility and acquisition cost, the reward is defined only at the terminal stage and jointly determined by classification correctness and cumulative modality acquisition cost. A backward stage-wise optimization strategy is introduced to improve policy consistency and training stability. Experiments on four public multi-omics datasets, including ROSMAP, LGG, BRCA, and KIPAN, demonstrate that SDM-Q effectively reduces redundant modality acquisition while maintaining competitive classification performance compared with methods using complete multi-omics inputs. In the BRCA and KIPAN datasets, more than 99\% and 95\% of subjects, respectively, achieve accurate classification using only a single omics modality, while the average number of acquired modalities remains below two for ROSMAP and LGG. These results suggest that cost-aware sequential decision-making provides an effective paradigm for improving the efficiency of precision medicine workflows.

cs.LG↗

arXiv2026

VFGS-Net: Frequency-Guided State-Space Learning for Topology-Preserving Retinal Vessel Segmentation

Accurate retinal vessel segmentation is a critical prerequisite for quantitative analysis of retinal images and computer-aided diagnosis of vascular diseases such as diabetic retinopathy. However, the elongated morphology, wide scale variation, and low contrast of retinal vessels pose significant challenges for existing methods, making it difficult to simultaneously preserve fine capillaries and maintain global topological continuity. To address these challenges, we propose the Vessel-aware Frequency-domain and Global Spatial modeling Network (VFGS-Net), an end-to-end segmentation framework that seamlessly integrates frequency-aware feature enhancement, dual-path convolutional representation learning, and bidirectional asymmetric spatial state-space modeling within a unified architecture. Specifically, VFGS-Net employs a dual-path feature convolution module to jointly capture fine-grained local textures and multi-scale contextual semantics. A novel vessel-aware frequency-domain channel attention mechanism is introduced to adaptively reweight spectral components, thereby enhancing vessel-relevant responses in high-level features. Furthermore, at the network bottleneck, we propose a bidirectional asymmetric Mamba2-based spatial modeling block to efficiently capture long-range spatial dependencies and strengthen the global continuity of vascular structures. Extensive experiments on four publicly available retinal vessel datasets demonstrate that VFGS-Net achieves competitive or superior performance compared to state-of-the-art methods. Notably, our model consistently improves segmentation accuracy for fine vessels, complex branching patterns, and low-contrast regions, highlighting its robustness and clinical potential.

cs.CV↗

arXiv2025

Convolutional Feature Noise Reduction for 2D Cardiac MR Image Segmentation

Noise reduction constitutes a crucial operation within Digital Signal Processing. Regrettably, it frequently remains neglected when dealing with the processing of convolutional features in segmentation networks. This oversight could trigger the butterfly effect, impairing the subsequent outcomes within the entire feature system. To complete this void, we consider convolutional features following Gaussian distributions as feature signal matrices and then present a simple and effective feature filter in this study. The proposed filter is fundamentally a low-amplitude pass filter primarily aimed at minimizing noise in feature signal inputs and is named Convolutional Feature Filter (CFF). We conducted experiments on two established 2D segmentation networks and two public cardiac MR image datasets to validate the effectiveness of the CFF, and the experimental findings demonstrated a decrease in noise within the feature signal matrices. To enable a numerical observation and analysis of this reduction, we developed a binarization equation to calculate the information entropy of feature signals.

cs.CV↗

arXiv2025

Tuning the Surface States of $Fe_3O_4$ Nanoparticles for Enhanced Magnetic Anisotropy and Induction Efficacy

Magnetite ($Fe_3O_4$) nanoparticles are crucial for biomedical applications, including magnetic hyperthermia, targeted drug delivery, and MRI contrast enhancement, due to their biocompatibility and unique physicochemical properties. Here, we investigate how surface states influence their induction performance. Heat treatment removes surface water and FeOOH, forming a ${\gamma}$-$Fe_2O_3$ shell, as confirmed by synchrotron powder diffraction, neutron powder diffraction, thermogravimetric analysis, X-ray photoelectron spectroscopy, X-ray absorption spectroscopy, and time-of-flight inelastic neutron spectroscopy. AC magnetic susceptibility measurements reveal that this surface modification enhances magnetic anisotropy and reduces the spin relaxation time, leading to a 140% increase in the specific absorption rate. Additionally, the increased anisotropy suppresses the low-temperature clustered spin-glass transition and raises the blocking temperature. These findings highlight surface-state engineering as a powerful approach to optimizing $Fe_3O_4$ nanoparticles for biomedical applications.

cond-mat.mes-hall↗

arXiv2025

FAD-Net: Frequency-Domain Attention-Guided Diffusion Network for Coronary Artery Segmentation using Invasive Coronary Angiography

Background: Coronary artery disease (CAD) remains one of the leading causes of mortality worldwide. Precise segmentation of coronary arteries from invasive coronary angiography (ICA) is critical for effective clinical decision-making. Objective: This study aims to propose a novel deep learning model based on frequency-domain analysis to enhance the accuracy of coronary artery segmentation and stenosis detection in ICA, thereby offering robust support for the stenosis detection and treatment of CAD. Methods: We propose the Frequency-Domain Attention-Guided Diffusion Network (FAD-Net), which integrates a frequency-domain-based attention mechanism and a cascading diffusion strategy to fully exploit frequency-domain information for improved segmentation accuracy. Specifically, FAD-Net employs a Multi-Level Self-Attention (MLSA) mechanism in the frequency domain, computing the similarity between queries and keys across high- and low-frequency components in ICAs. Furthermore, a Low-Frequency Diffusion Module (LFDM) is incorporated to decompose ICAs into low- and high-frequency components via multi-level wavelet transformation. Subsequently, it refines fine-grained arterial branches and edges by reintegrating high-frequency details via inverse fusion, enabling continuous enhancement of anatomical precision. Results and Conclusions: Extensive experiments demonstrate that FAD-Net achieves a mean Dice coefficient of 0.8717 in coronary artery segmentation, outperforming existing state-of-the-art methods. In addition, it attains a true positive rate of 0.6140 and a positive predictive value of 0.6398 in stenosis detection, underscoring its clinical applicability. These findings suggest that FAD-Net holds significant potential to assist in the accurate diagnosis and treatment planning of CAD.

eess.IV↗

arXiv2025

Multi-Disease-Aware Training Strategy for Cardiac MR Image Segmentation

Accurate segmentation of the ventricles from cardiac magnetic resonance images (CMRIs) is crucial for enhancing the diagnosis and analysis of heart conditions. Deep learning-based segmentation methods have recently garnered significant attention due to their impressive performance. However, these segmentation methods are typically good at partitioning regularly shaped organs, such as the left ventricle (LV) and the myocardium (MYO), whereas they perform poorly on irregularly shaped organs, such as the right ventricle (RV). In this study, we argue that this limitation of segmentation models stems from their insufficient generalization ability to address the distribution shift of segmentation targets across slices, cardiac phases, and disease conditions. To overcome this issue, we present a Multi-Disease-Aware Training Strategy (MTS) and restructure the introduced CMRI datasets into multi-disease datasets. Additionally, we propose a specialized data processing technique for preprocessing input images to support the MTS. To validate the effectiveness of our method, we performed control group experiments and cross-validation tests. The experimental results show that (1) network models trained using our proposed strategy achieved superior segmentation performance, particularly in RV segmentation, and (2) these networks exhibited robust performance even when applied to data from unknown diseases.

eess.IV↗

arXiv2024

Natural Is The Best: Model-Agnostic Code Simplification for Pre-trained Large Language Models

Pre-trained Large Language Models (LLM) have achieved remarkable successes in several domains. However, code-oriented LLMs are heavy in computational complexity, and quadratically with the length of the input. Toward simplifying the input program of an LLM, the state-of-the-art approach has the strategies to filter the input code tokens based on the attention scores given by the LLM. The decision to simplify the input should not rely on the attention patterns of an LLM, as these patterns are influenced by both the model architecture and the pre-training dataset. Since the model and dataset are part of the solution domain, not the problem domain where the input belongs, the outcome may differ when the model is pre-trained on a different dataset. We propose SlimCode, a model-agnostic code simplification solution for LLMs that depends on the nature of input code tokens. As an empirical study on the LLMs including CodeBERT, CodeT5, and GPT-4 for two main tasks: code search and summarization, we reported that 1) the removal ratio of code has a linear-like relation with the saving ratio on training time, 2) the impact of categorized tokens on code simplification can vary significantly, 3) the impact of categorized tokens on code simplification is task-specific but model-agnostic, and 4) the above findings hold for the paradigm-prompt engineering and interactive in-context learning. The empirical results showed that SlimCode can improve the state-of-the-art technique by 9.46% and 5.15% in terms of MRR and BLEU score on code search and summarization. Moreover, SlimCode is 133 times faster than the state-of-the-art approach. Additionally, SlimCode can reduce the cost of invoking GPT-4 by up to 24% per API query, while still producing comparable results to those with the original code.

cs.SE↗

arXiv2020

Understanding the mechanism of oxygen evolution reaction (OER) with the consideration of spin

Oxygen evolution reaction (OER) with intractable high overpotential is the rate-limiting step for rechargeable metal-air battery, water electrolysis systems, and solar fuels devices. There exists a spin state transition from spin singlet OH-/H2O reactant to spin triplet O2 product, which has not received enough attention yet. In this perspective, we attempt to retrospect electron behaviours during the whole OER process, with the consideration of spin attribute. Regardless of the adopted mechanisms by different electrocatalysts, for example, adsorbate evolution mechanism (AEM) or lattice oxygen mechanism (LOM), the underlying rationale is that active sites have to extract three in four electrons with the same spin direction before the formation of O=O. This spin-sensitive nature of OER superimposes additional high requirements on the electrocatalysts, especially on the spin structure, to compliment the fast electron transfer in the interface with spin selection and smoothly delivery afterwards. When optimizing the geometric and electronic structures catering for the spin-sensitive OER, awareness of the couplings between spin, charge, orbital and lattice is necessary. Some spin-correlated physical properties, such as (1) crystal field, (2) coordination, (3) oxidation, (4) bonding, (5) eg electron number, (6) conductivity and (7) magnetism, are also discussed briefly. It is hoped that our perspective could shed lights on the underlying physics of the slow kinetics of OER, providing a rational guidance for more effective energy conversion electrocatalysts designs.

cond-mat.mtrl-sci↗