arXiv subjects

Xiaorui Zhang

Publications and source records attributed to Xiaorui Zhang.

8 recordsLinked to original sources

arXiv2026

Intuitive Surgical SurgToolLoc and SurgVU Challenges Results: 2022-2025

Robotic assisted (RA) surgery promises to transform surgical intervention. Intuitive Surgical is committed to fostering these changes and the machine learning models and algorithms that will enable them. With these goals in mind we have invited the surgical data science community to participate in a yearly competition hosted through the Medical Imaging Computing and Computer Assisted Interventions (MICCAI) conference. With varying changes from year to year, we have challenged the community to solve difficult machine learning problems in the context of advanced RA applications. Here we document the results of these challenges, focusing on surgical tool localization (SurgToolLoc) and surgical visual understanding (SurgVU). The publicly released dataset that accompanies these challenges is detailed in a separate paper arXiv:2501.09209 [1].

cs.CV↗

arXiv2026

Surgical Visual Understanding (SurgVU) Dataset

Owing to recent advances in machine learning and the ability to harvest large amounts of data during robotic-assisted surgeries, surgical data science is ripe for foundational work. We present a large dataset of surgical videos and their accompanying labels for this purpose. We describe how the data was collected and some of its unique attributes. Multiple example problems are outlined. Although the dataset was curated for a particular set of scientific challenges (in an accompanying paper), it is general enough to be used for a broad range machine learning questions. Our hope is that this dataset exposes the larger machine learning community to the challenging problems within surgical data science, and becomes a touch-stone for future research. The videos are available at https://storage.googleapis.com/isi-surgvu/surgvu24_videos_only.zip, the labels at https://storage.googleapis.com/isi-surgvu/surgvu24_labels_updated_v2.zip, a validation set for tool detection problem at https://storage.googleapis.com/isi-surgvu/cat1_test_set_public.zip, and a sample set of question & answer pairs dataset for surgical visual question answering at https://storage.googleapis.com/isi-surgvu/SURGVU25_cat_2_sample_set_public.zip.

cs.CV↗

arXiv2026

Seeing Through Smoke: Surgical Desmoking for Improved Visual Perception

Minimally invasive and robot-assisted surgery relies heavily on endoscopic imaging, yet surgical smoke produced by electrocautery and vessel-sealing instruments can severely degrade visual perception and hinder vision-based functionalities. We present a transformer-based surgical desmoking model with a physics-inspired desmoking head that jointly predicts smoke-free image and corresponding smoke map. To address the scarcity of paired smoky-to-smoke-free training data, we develop a synthetic data generation pipeline that blends artificial smoke patterns with real endoscopic images, yielding over 80,000 paired samples for supervised training. We further curate, to our knowledge, the largest paired surgical smoke dataset to date, comprising 5,817 image pairs captured with the da Vinci robotic surgical system, enabling benchmarking on high-resolution endoscopic images. Extensive experiments on both a public benchmark and our dataset demonstrate state-of-the-art performance in image reconstruction compared to existing dehazing and desmoking approaches. We also assess the impact of desmoking on downstream stereo depth estimation and instrument segmentation, highlighting both the potential benefits and current limitations of digital smoke removal methods.

cs.CV↗

arXiv2026

A New Framework for Explainable Rare Cell Identification in Single-Cell Transcriptomics Data

The detection of rare cell types in single-cell transcriptomics data is crucial for elucidating disease pathogenesis and tissue development dynamics. However, a critical gap that persists in current methods is their inability to provide an explanation based on genes for each cell they have detected as rare. We identify three primary sources of this deficiency. First, the anomaly detectors often function as "black boxes", designed to detect anomalies but unable to explain why a cell is anomalous. Second, the standard analytical framework hinders interpretability by relying on dimensionality reduction techniques, such as Principal Component Analysis (PCA), which transform meaningful gene expression data into abstract, uninterpretable features. Finally, existing explanation algorithms cannot be readily applied to this domain, as single-cell data is characterized by high dimensionality, noise, and substantial sparsity. To overcome these limitations, we introduce a framework for explainable anomaly detection in single-cell transcriptomics data which not only identifies individual anomalies, but also provides a visual explanation based on genes that makes an instance anomalous. This framework has two key ingredients that are not existed in current methods applied in this domain. First, it eliminates the PCA step which is deemed to be an essential component in previous studies. Second, it employs the state-of-art anomaly detector and explainer as the efficient and effective means to find each rare cell and the relevant gene subspace in order to provide explanations for each rare cell as well as the typical normal cell associated with the rare cell's closest normal cells.

q-bio.GN↗

arXiv2025

SurgiSR4K: A High-Resolution Endoscopic Video Dataset for Robotic-Assisted Minimally Invasive Procedures

High-resolution imaging is crucial for enhancing visual clarity and enabling precise computer-assisted guidance in minimally invasive surgery (MIS). Despite the increasing adoption of 4K endoscopic systems, there remains a significant gap in publicly available native 4K datasets tailored specifically for robotic-assisted MIS. We introduce SurgiSR4K, the first publicly accessible surgical imaging and video dataset captured at a native 4K resolution, representing realistic conditions of robotic-assisted procedures. SurgiSR4K comprises diverse visual scenarios including specular reflections, tool occlusions, bleeding, and soft tissue deformations, meticulously designed to reflect common challenges faced during laparoscopic and robotic surgeries. This dataset opens up possibilities for a broad range of computer vision tasks that might benefit from high resolution data, such as super resolution (SR), smoke removal, surgical instrument detection, 3D tissue reconstruction, monocular depth estimation, instance segmentation, novel view synthesis, and vision-language model (VLM) development. SurgiSR4K provides a robust foundation for advancing research in high-resolution surgical imaging and fosters the development of intelligent imaging technologies aimed at enhancing performance, safety, and usability in image-guided robotic surgeries.

eess.IV↗

arXiv2023

Long-lead forecasts of wintertime air stagnation index in southern China using oceanic memory effects

Stagnant weather condition is one of the major contributors to air pollution as it is favorable for the formation and accumulation of pollutants. To measure the atmosphere's ability to dilute air pollutants, Air Stagnation Index (ASI) has been introduced as an important meteorological index. Therefore, making long-lead ASI forecasts is vital to make plans in advance for air quality management. In this study, we found that autumn Niño indices derived from sea surface temperature (SST) anomalies show a negative correlation with wintertime ASI in southern China, offering prospects for a prewinter forecast. We developed an LSTM-based model to predict the future wintertime ASI. Results demonstrated that multivariate inputs (past ASI and Niño indices) achieve better forecast performance than univariate input (only past ASI). The model achieves a correlation coefficient of 0.778 between the actual and predicted ASI, exhibiting a high degree of consistency.

physics.ao-ph↗

arXiv2023

Equilibrium distribution and diffusion of mixed hydrogen-methane gas in gravity field

Repurposing existing natural gas pipelines is a promising solution for large-scale transportation of mixed hydrogen-methane gas. However, it remains debatable whether gravitational stratification can notably affect hydrogen partial pressure in the gas mixture. To address this issue, we combined molecular dynamics simulation with thermodynamic and diffusion theories. Our study systematically examined the equilibrium distribution of hydrogen-methane mixtures in gravity fields. We demonstrated that partial pressures of both gases decrease with altitude, with hydrogen showing slower decrease due to its smaller molar mass. As a result, the volume fraction of hydrogen is maximized at the top end of pipes. The stratification is more favorable at low temperature and large altitude drops, with notable gas stratification only occurring at extremely large drops in altitude, being generally negligible even at a drop of 1500 m. Furthermore, we showed that the diffusion time required to achieve the equilibrium distribution is proportional to gas pressure and the square of pipeline height. This requires approximately 300 years for a 1500 m pipeline at 1 bar. Therefore, temporary interruptions in pipeline gas transportation will not cause visible stratification. Our work clarifies the effect of gravity on hydrogen-methane gas mixtures and provides quantitative insights into assessing the stratification of gas mixtures in pipelines.

cond-mat.stat-mech↗

arXiv2019

Equality cases for a bound on the chromatic number

It is known that the inequality $$ \frac{χ(G)(χ(G)-1)}{2} + |V| - χ(G) \leq |E|$$ holds for all connected graphs, where $χ(G)$ denotes the chromatic number of $G$. We prove that equality holds whenever the graph consists of a complete graph or an odd cycle, together with finitely many trees attached to its vertices.

math.CO↗