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Xiaoyan Li

Publications and source records attributed to Xiaoyan Li.

At least 73 records · Page 4Linked to original sources

DeepCervix: A Deep Learning-based Framework for the Classification of Cervical Cells Using Hybrid Deep Feature Fusion Techniques

Cervical cancer, one of the most common fatal cancers among women, can be prevented by regular screening to detect any precancerous lesions at early stages and treat them. Pap smear test is a widely performed screening technique for early detection of cervical cancer, whereas this manual screening method suffers from high false-positive results because of human errors. To improve the manual screening practice, machine learning (ML) and deep learning (DL) based computer-aided diagnostic (CAD) systems have been investigated widely to classify cervical pap cells. Most of the existing researches require pre-segmented images to obtain good classification results, whereas accurate cervical cell segmentation is challenging because of cell clustering. Some studies rely on handcrafted features, which cannot guarantee the classification stage's optimality. Moreover, DL provides poor performance for a multiclass classification task when there is an uneven distribution of data, which is prevalent in the cervical cell dataset. This investigation has addressed those limitations by proposing DeepCervix, a hybrid deep feature fusion (HDFF) technique based on DL to classify the cervical cells accurately. Our proposed method uses various DL models to capture more potential information to enhance classification performance. Our proposed HDFF method is tested on the publicly available SIPAKMED dataset and compared the performance with base DL models and the LF method. For the SIPAKMED dataset, we have obtained the state-of-the-art classification accuracy of 99.85%, 99.38%, and 99.14% for 2-class, 3-class, and 5-class classification. Moreover, our method is tested on the Herlev dataset and achieves an accuracy of 98.32% for binary class and 90.32% for 7-class classification.

eess.IV↗

A Comprehensive Review for MRF and CRF Approaches in Pathology Image Analysis

Pathology image analysis is an essential procedure for clinical diagnosis of many diseases. To boost the accuracy and objectivity of detection, nowadays, an increasing number of computer-aided diagnosis (CAD) system is proposed. Among these methods, random field models play an indispensable role in improving the analysis performance. In this review, we present a comprehensive overview of pathology image analysis based on the markov random fields (MRFs) and conditional random fields (CRFs), which are two popular random field models. Firstly, we introduce the background of two random fields and pathology images. Secondly, we summarize the basic mathematical knowledge of MRFs and CRFs from modelling to optimization. Then, a thorough review of the recent research on the MRFs and CRFs of pathology images analysis is presented. Finally, we investigate the popular methodologies in the related works and discuss the method migration among CAD field.

cs.CV↗

A Hierarchical Conditional Random Field-based Attention Mechanism Approach for Gastric Histopathology Image Classification

In the Gastric Histopathology Image Classification (GHIC) tasks, which are usually weakly supervised learning missions, there is inevitably redundant information in the images. Therefore, designing networks that can focus on effective distinguishing features has become a popular research topic. In this paper, to accomplish the tasks of GHIC superiorly and to assist pathologists in clinical diagnosis, an intelligent Hierarchical Conditional Random Field based Attention Mechanism (HCRF-AM) model is proposed. The HCRF-AM model consists of an Attention Mechanism (AM) module and an Image Classification (IC) module. In the AM module, an HCRF model is built to extract attention regions. In the IC module, a Convolutional Neural Network (CNN) model is trained with the attention regions selected and then an algorithm called Classification Probability-based Ensemble Learning is applied to obtain the image-level results from patch-level output of the CNN. In the experiment, a classification specificity of 96.67% is achieved on a gastric histopathology dataset with 700 images. Our HCRF-AM model demonstrates high classification performance and shows its effectiveness and future potential in the GHIC field.

cs.CV↗

A Comprehensive Review of Computer-aided Whole-slide Image Analysis: from Datasets to Feature Extraction, Segmentation, Classification, and Detection Approaches

With the development of computer-aided diagnosis (CAD) and image scanning technology, Whole-slide Image (WSI) scanners are widely used in the field of pathological diagnosis. Therefore, WSI analysis has become the key to modern digital pathology. Since 2004, WSI has been used more and more in CAD. Since machine vision methods are usually based on semi-automatic or fully automatic computers, they are highly efficient and labor-saving. The combination of WSI and CAD technologies for segmentation, classification, and detection helps histopathologists obtain more stable and quantitative analysis results, save labor costs and improve diagnosis objectivity. This paper reviews the methods of WSI analysis based on machine learning. Firstly, the development status of WSI and CAD methods are introduced. Secondly, we discuss publicly available WSI datasets and evaluation metrics for segmentation, classification, and detection tasks. Then, the latest development of machine learning in WSI segmentation, classification, and detection are reviewed continuously. Finally, the existing methods are studied, the applicabilities of the analysis methods are analyzed, and the application prospects of the analysis methods in this field are forecasted.

cs.CV↗

Three dimensional vectorial imaging of surface phonons

While phonons and their related properties have been studied comprehensively in bulk materials, a thorough understanding of surface phonons for nanoscale objects remains elusive. Infra-red imaging methods with photons or electrons exist, which can map these vibrational excitations down to the individual atom scale. However, no technique so far was able to directly reveal the complete three-dimensional vectorial picture of the phononic electromagnetic density of states from a nanostructured object. Using a highly monochromated electron beam in a scanning transmission electron microscope, we could visualize varying phonon signatures from nanoscale MgO cubes both as a function of the beam position, energy-loss and tilt angle. The vibrational responses were described in terms of well-defined eigenmodes and were used to tomographically reconstruct the phononic surface fields of the object, disclosing effects invisible by conventional mapping. Surface phonon applications rely critically on the way the electromagnetic field is spatially and vectorially shaped, strongly influencing the optical, thermal and electronic behavior of the materials. Such 3D information therefore promises novel insights in nanoscale physical phenomena and is invaluable to the design and optimization of nanostructures for fascinating new uses.

physics.ins-det↗

Can Copper Nanostructures Sustain High-Quality Plasmons?

Silver is considered to be the king among plasmonic materials because it features low inelastic absorption in the visible and infrared (vis-IR) spectral regions compared to other metals. In contrast, copper is commonly regarded as being too lossy for plasmonic applications. Here, we experimentally demonstrate vis-IR plasmons in long copper nanowires (NWs) with quality factors that exceed a value of 60, as determined by spatially resolved, high-resolution electron energy-loss spectroscopy (EELS) measurements. We explain this counterintuitive result by the fact that plasmons in these metal wires have most of their electromagnetic energy outside the metal, and thus, they are less sensitive to inelastic losses in the material. We present an extensive set of data acquired on long silver and copper NWs of varying diameters supporting this conclusion and further allowing us to understand the relative roles played by radiative and nonradiative losses in plasmons that span a wide range of energies down to $<20\,$meV. At such small plasmon energies, thermal population of these modes becomes significant enough to enable the observation of electron energy gains associated with plasmon absorption events. Our results support the use of copper as an attractive cheap and abundant material platform for high quality plasmons in elongated nanostructures.

cond-mat.mtrl-sci↗

Gastric histopathology image segmentation using a hierarchical conditional random field

For the Convolutional Neural Networks (CNNs) applied in the intelligent diagnosis of gastric cancer, existing methods mostly focus on individual characteristics or network frameworks without a policy to depict the integral information. Mainly, Conditional Random Field (CRF), an efficient and stable algorithm for analyzing images containing complicated contents, can characterize spatial relation in images. In this paper, a novel Hierarchical Conditional Random Field (HCRF) based Gastric Histopathology Image Segmentation (GHIS) method is proposed, which can automatically localize abnormal (cancer) regions in gastric histopathology images obtained by an optical microscope to assist histopathologists in medical work. This HCRF model is built up with higher order potentials, including pixel-level and patch-level potentials, and graph-based post-processing is applied to further improve its segmentation performance. Especially, a CNN is trained to build up the pixel-level potentials and another three CNNs are fine-tuned to build up the patch-level potentials for sufficient spatial segmentation information. In the experiment, a hematoxylin and eosin (H&E) stained gastric histopathological dataset with 560 abnormal images are divided into training, validation and test sets with a ratio of 1 : 1 : 2. Finally, segmentation accuracy, recall and specificity of 78.91%, 65.59%, and 81.33% are achieved on the test set. Our HCRF model demonstrates high segmentation performance and shows its effectiveness and future potential in the GHIS field.

cs.CV↗

A Comprehensive Review for Breast Histopathology Image Analysis Using Classical and Deep Neural Networks

Breast cancer is one of the most common and deadliest cancers among women. Since histopathological images contain sufficient phenotypic information, they play an indispensable role in the diagnosis and treatment of breast cancers. To improve the accuracy and objectivity of Breast Histopathological Image Analysis (BHIA), Artificial Neural Network (ANN) approaches are widely used in the segmentation and classification tasks of breast histopathological images. In this review, we present a comprehensive overview of the BHIA techniques based on ANNs. First of all, we categorize the BHIA systems into classical and deep neural networks for in-depth investigation. Then, the relevant studies based on BHIA systems are presented. After that, we analyze the existing models to discover the most suitable algorithms. Finally, publicly accessible datasets, along with their download links, are provided for the convenience of future researchers.

eess.IV↗

Extended Insertion Functions for Opacity Enforcement

Opacity is a confidentiality property that holds when certain secret strings of a given system cannot be revealed to an outside observer under any system activity. Opacity violations stimulate the study of opacity enforcement strategies. Among other methodologies, opacity has been enforced using insertion mechanisms, i.e., output obfuscation mechanisms that are allowed to insert fictitious output symbols before actual system outputs, in order to preserve opacity. This paper studies and analyzes more powerful extended insertion mechanisms, which can insert symbols before and after an actual system output, thus, providing opacity to a wider class of systems. In order to address practical considerations, the paper also introduces event insertion constraints (i.e., the case when only specific symbols can be inserted before and/or after an actual system output). For each case, we construct an appropriate verifier that can be used to obtain necessary and sufficient conditions for checking opacity enforceability.

eess.SY↗

Fast reconstruction of atomic-scale STEM-EELS images from sparse sampling

This paper discusses the reconstruction of partially sampled spectrum-images to accelerate the acquisition in scanning transmission electron microscopy (STEM). The problem of image reconstruction has been widely considered in the literature for many imaging modalities, but only a few attempts handled 3D data such as spectral images acquired by STEM electron energy loss spectroscopy (EELS). Besides, among the methods proposed in the microscopy literature, some are fast but inaccurate while others provide accurate reconstruction but at the price of a high computation burden. Thus none of the proposed reconstruction methods fulfills our expectations in terms of accuracy and computation complexity. In this paper, we propose a fast and accurate reconstruction method suited for atomic-scale EELS. This method is compared to popular solutions such as beta process factor analysis (BPFA) which is used for the first time on STEM-EELS images. Experiments based on real as synthetic data will be conducted.

eess.IV↗

Spatial and spectral dynamics in STEM hyperspectral imaging using random scan patterns

The evolution of the scanning modules for scanning transmission electron microscopes (STEM) has realized the possibility to generate arbitrary scan pathways, an approach currently explored to improve acquisition speed and to reduce electron dose effects. In this work, we present the implementation of a random scan operating mode in STEM achieved at the hardware level via a custom scan control module. A pre-defined pattern with fully shuffled raster order is used to sample the entire region of interest. Subsampled random sparse images can then be extracted at successive time frames, to which suitable image reconstruction techniques can be applied. With respect to the conventional raster scan mode, this method permits to limit dose accumulation effects, but also to decouple the spatial and temporal information in hyperspectral images. We provide some proofs of concept of the flexibility of the random scan operating mode, presenting examples of its applications in different spectro-microscopy contexts: atomically-resolved elemental maps with electron energy loss spectroscopy and nanoscale-cathodoluminescence spectrum images. By employing adapted post-processing tools, it is demonstrated that the method allows to precisely track and correct for sample instabilities and to follow spectral diffusion with a high spatial localization.

physics.app-ph↗

Point defect states emergence in a plasmonic crystal

Plasmonic crystals are well known to have band structure including a bandgap, enabling the control of surface plasmon propagation and confinement. The band dispersion relation of bulk crystals has been generally measured by momentum-resolved spectroscopy using far field optical techniques while the defects introduced in the crystals have separately been investigated by near field imaging techniques so far. Particularly, defect related energy levels introduced in the plasmonic band gap have not been observed experimentally. In order to investigate such a localized mode, we performed electron energy-loss spectroscopy (EELS), on a point defect introduced in a plasmonic crystal made up of flat cylinders protruding out of a metal film and arranged on a triangular lattice. The energy level of the defect mode was observed to lie within the full band-gap energy range. This was confirmed by a momentum-resolved EELS measurement of the band gap performed on the same plasmonic crystal. Furthermore, we experimentally and theoretically investigated the emergence of the defect states by starting with a corral of flat cylinders protrusions and adding sequentially additional shells of those in order to eventually forming a plasmonic band-gap crystal encompassing a single point defect. It is demonstrated that a defect-like state already forms with a crystal made up of only two shells.

physics.optics↗

Exploring Deep Anomaly Detection Methods Based on Capsule Net

In this paper, we develop and explore deep anomaly detection techniques based on the capsule network (CapsNet) for image data. Being able to encoding intrinsic spatial relationship between parts and a whole, CapsNet has been applied as both a classifier and deep autoencoder. This inspires us to design a prediction-probability-based and a reconstruction-error-based normality score functions for evaluating the "outlierness" of unseen images. Our results on three datasets demonstrate that the prediction-probability-based method performs consistently well, while the reconstruction-error-based approach is relatively sensitive to the similarity between labeled and unlabeled images. Furthermore, both of the CapsNet-based methods outperform the principled benchmark methods in many cases.

cs.LG↗

Tailored nanoscale plasmon-enhanced vibrational electron spectroscopy

Vibrational optical spectroscopies can be enhanced by surface plasmons to reach molecular-sized limits of detection and characterization. The level of enhancement strongly depends on microscopic details of the sample that are generally missed by macroscopic techniques. Here we investigate phonons in h-BN by coupling them to silver-nanowire plasmons, whose energy is tuned by modifying the nanowire length. Specifically, we use electron beam milling to accurately and iteratively change the nanowire length, followed by electron energy-loss spectroscopy to reveal the plasmon-enhanced vibrational features of h-BN. This allows us to investigate otherwise hidden bulk phonons and observe strong plasmon-phonon coupling. The new milling-and-spectroscopy technique holds great potential for resolving vibrational features in material nanostructures.

cond-mat.mes-hall↗

Weakly Supervised Object Detection with Segmentation Collaboration

Weakly supervised object detection aims at learning precise object detectors, given image category labels. In recent prevailing works, this problem is generally formulated as a multiple instance learning module guided by an image classification loss. The object bounding box is assumed to be the one contributing most to the classification among all proposals. However, the region contributing most is also likely to be a crucial part or the supporting context of an object. To obtain a more accurate detector, in this work we propose a novel end-to-end weakly supervised detection approach, where a newly introduced generative adversarial segmentation module interacts with the conventional detection module in a collaborative loop. The collaboration mechanism takes full advantages of the complementary interpretations of the weakly supervised localization task, namely detection and segmentation tasks, forming a more comprehensive solution. Consequently, our method obtains more precise object bounding boxes, rather than parts or irrelevant surroundings. Expectedly, the proposed method achieves an accuracy of 51.0% on the PASCAL VOC 2007 dataset, outperforming the state-of-the-arts and demonstrating its superiority for weakly supervised object detection.

cs.CV↗

Exoplanets in the Antarctic sky. II. 116 Transiting Exoplanet Candidates Found by AST3-II (CHESPA) within the Southern CVZ of TESS

We report first results from the CHinese Exoplanet Searching Program from Antarctica (CHESPA)---a wide-field high-resolution photometric survey for transiting exoplanets carried out using telescopes of the AST3 (Antarctic Survey Telescopes times 3) project. There are now three telescopes (AST3-I, AST3-II, and CSTAR-II) operating at Dome A---the highest point on the Antarctic Plateau---in a fully automatic and remote mode to exploit the superb observing conditions of the site, and its long and uninterrupted polar nights. The search for transiting exoplanets is one of the key projects for AST3. During the Austral winters of 2016 and 2017 we used the AST3-II telescope to survey a set of target fields near the southern ecliptic pole, falling within the continuous viewing zone of the TESS mission \citep{Ricker10}. The first data release of the 2016 data, including images, catalogs and lightcurves of 26578 bright stars ($7.5\le i \le15$) was presented in \citet{Zhang18}. The best precision, as measured by the RMS of the lightcurves at the optimum magnitude of the survey ($i=10$), is around 2\,mmag. We detect 222 objects with plausible transit signals from these data, 116 of which are plausible transiting exoplanet candidates according to their stellar properties as given by the TESS Input Catalog \citep{Stassun17}, Gaia DR2 \citep{Gaia18} and TESS-HERMES spectroscopy \citep{Sharma18}. With the first data release from TESS expected in late 2018, this candidate list will be a timely for improving the rejection of potential false positives.

astro-ph.EP↗

Exoplanets in the Antarctic Sky. I. The First Data Release of AST3-II (CHESPA) and New Found Variables within the Southern CVZ of TESS

Located at Dome A, the highest point of the Antarctic plateau, the Chinese Kunlun station is considered to be one of the best ground-based photometric sites because of its extremely cold, dry, and stable atmosphere(Saunders et al. 2009). A target can be monitored from there for over 40 days without diurnal interruption during a polar winter. This makes Kunlun station a perfect site to search for short-period transiting exoplanets. Since 2008, an observatory has been built at Kunlun station and three telescopes are working there. Using these telescopes, the AST3 project has been carried out over the last six years with a search for transiting exoplanets as one of its key programs (CHESPA). In the austral winters of 2016 and 2017, a set of target fields in the Southern CVZ of TESS (Ricker et al. 2009) were monitored by the AST3-II telescope. In this paper, we introduce the CHESPA and present the first data release containing photometry of 26,578 bright stars (m_i < 15). The best photometric precision at the optimum magnitude for the survey is around 2 mmag. To demonstrate the data quality, we also present a catalog of 221 variables with a brightness variation greater than 5 mmag from the 2016 data. Among these variables, 179 are newly identified periodic variables not listed in the AAVSO databasea), and 67 are listed in the Candidate Target List(Stassun et al. 2017). These variables will require careful attention to avoid false-positive signals when searching for transiting exoplanets. Dozens of new transiting exoplanet candidates will be also released in a subsequent paper(Zhang et al. 2018b).

astro-ph.IM↗

The First Release of the AST3-1 Point Source Catalogue from Dome A, Antarctica

The three Antarctic Survey Telescopes (AST3) aim to carry out time domain imaging survey at Dome A, Antarctica. The first of the three telescopes (AST3-1) was successfully deployed on January 2012. AST3-1 is a 500\,mm aperture modified Schmidt telescope with a 680\,mm diameter primary mirror. AST3-1 is equipped with a SDSS $i$ filter and a 10k $\times$ 10k frame transfer CCD camera, reduced to 5k $\times$ 10k by electronic shuttering, resulting in a 4.3 deg$^2$ field-of-view. To verify the capability of AST3-1 for a variety of science goals, extensive commissioning was carried out between March and May 2012. The commissioning included a survey covering 2000 deg$^2$ as well as the entire Large and Small Magellanic Clouds. Frequent repeated images were made of the center of the Large Magellanic Cloud, a selected exoplanet transit field, and fields including some Wolf-Rayet stars. Here we present the data reduction and photometric measurements of the point sources observed by AST3-1. We have achieved a survey depth of 19.3\,mag in 60 s exposures with 5\,mmag precision in the light curves of bright stars. The facility achieves sub-mmag photometric precision under stable survey conditions, approaching its photon noise limit. These results demonstrate that AST3-1 at Dome A is extraordinarily competitive in time-domain astronomy, including both quick searches for faint transients and the detection of tiny transit signals.

astro-ph.IM↗