arXiv subjects

Xin Cao

Publications and source records attributed to Xin Cao.

At least 37 records · Page 2Linked to original sources

arXiv2025

PoolingVQ: A VQVAE Variant for Reducing Audio Redundancy and Boosting Multi-Modal Fusion in Music Emotion Analysis

Multimodal music emotion analysis leverages both audio and MIDI modalities to enhance performance. While mainstream approaches focus on complex feature extraction networks, we propose that shortening the length of audio sequence features to mitigate redundancy, especially in contrast to MIDI's compact representation, may effectively boost task performance. To achieve this, we developed PoolingVQ by combining Vector Quantized Variational Autoencoder (VQVAE) with spatial pooling, which directly compresses audio feature sequences through codebook-guided local aggregation to reduce redundancy, then devised a two-stage co-attention approach to fuse audio and MIDI information. Experimental results on the public datasets EMOPIA and VGMIDI demonstrate that our multimodal framework achieves state-of-the-art performance, with PoolingVQ yielding effective improvement. Our proposed metho's code is available at Anonymous GitHub

cs.SD↗

arXiv2025

Emoanti: audio anti-deepfake with refined emotion-guided representations

Audio deepfake is so sophisticated that the lack of effective detection methods is fatal. While most detection systems primarily rely on low-level acoustic features or pretrained speech representations, they frequently neglect high-level emotional cues, which can offer complementary and potentially anti-deepfake information to enhance generalization. In this work, we propose a novel audio anti-deepfake system that utilizes emotional features (EmoAnti) by exploiting a pretrained Wav2Vec2 (W2V2) model fine-tuned on emotion recognition tasks, which derives emotion-guided representations, then designing a dedicated feature extractor based on convolutional layers with residual connections to effectively capture and refine emotional characteristics from the transformer layers outputs. Experimental results show that our proposed architecture achieves state-of-the-art performance on both the ASVspoof2019LA and ASVspoof2021LA benchmarks, and demonstrates strong generalization on the ASVspoof2021DF dataset. Our proposed approach's code is available at Anonymous GitHub1.

cs.SD↗

arXiv2025

SiCmiR Atlas: Single-Cell miRNA Landscapes Reveals Hub-miRNA and Network Signatures in Human Cancers

microRNA are pivotal post-transcriptional regulators whose single-cell behavior has remained largely inaccessible owing to technical barriers in single-cell small-RNA profiling. We present SiCmiR, a two-layer neural network that predicts miRNA expression profile from only 977 LINCS L1000 landmark genes reducing sensitivity to dropout of single-cell RNA-seq data. Proof-of-concept analyses illustrate how SiCmiR can uncover candidate hub-miRNAs in bulk-seq cell lines and hepatocellular carcinoma, scRNA-seq pancreatic ductal carcinoma and ACTH-secreting pituitary adenoma and extracellular-vesicle-mediated crosstalk in glioblastoma. Trained on 6462 TCGA paired miRNA-mRNA samples, SiCmiR attains state-of-the-art accuracy on held-out cancers and generalizes to unseen cancer types, drug perturbations and scRNA-seq. We next constructed SiCmiR-Atlas, containing 632 public datasets, 9.36 million cells, 726 cell types, which is the first dedicated database of single-cell mature miRNA expression--providing interactive visualization, biomarker identification and cell-type-resolved miRNA-target networks. SiCmiR transforms bulk-derived statistical power into a single-cell view of miRNA biology and provides a community resource SiCmiR Atlas for biomarker discovery. SiCmiR Atlas is avilable at https://awi.cuhk.edu.cn/~SiCmiR/.

q-bio.GN↗

arXiv2025

Do They Understand Them? An Updated Evaluation on Nonbinary Pronoun Handling in Large Language Models

Large language models (LLMs) are increasingly deployed in sensitive contexts where fairness and inclusivity are critical. Pronoun usage, especially concerning gender-neutral and neopronouns, remains a key challenge for responsible AI. Prior work, such as the MISGENDERED benchmark, revealed significant limitations in earlier LLMs' handling of inclusive pronouns, but was constrained to outdated models and limited evaluations. In this study, we introduce MISGENDERED+, an extended and updated benchmark for evaluating LLMs' pronoun fidelity. We benchmark five representative LLMs, GPT-4o, Claude 4, DeepSeek-V3, Qwen Turbo, and Qwen2.5, across zero-shot, few-shot, and gender identity inference. Our results show notable improvements compared with previous studies, especially in binary and gender-neutral pronoun accuracy. However, accuracy on neopronouns and reverse inference tasks remains inconsistent, underscoring persistent gaps in identity-sensitive reasoning. We discuss implications, model-specific observations, and avenues for future inclusive AI research.

cs.CL↗

arXiv2025

Attention-Guided Multi-Scale Local Reconstruction for Point Clouds via Masked Autoencoder Self-Supervised Learning

Self-supervised learning has emerged as a prominent research direction in point cloud processing. While existing models predominantly concentrate on reconstruction tasks at higher encoder layers, they often neglect the effective utilization of low-level local features, which are typically employed solely for activation computations rather than directly contributing to reconstruction tasks. To overcome this limitation, we introduce PointAMaLR, a novel self-supervised learning framework that enhances feature representation and processing accuracy through attention-guided multi-scale local reconstruction. PointAMaLR implements hierarchical reconstruction across multiple local regions, with lower layers focusing on fine-scale feature restoration while upper layers address coarse-scale feature reconstruction, thereby enabling complex inter-patch interactions. Furthermore, to augment feature representation capabilities, we incorporate a Local Attention (LA) module in the embedding layer to enhance semantic feature understanding. Comprehensive experiments on benchmark datasets ModelNet and ShapeNet demonstrate PointAMaLR's superior accuracy and quality in both classification and reconstruction tasks. Moreover, when evaluated on the real-world dataset ScanObjectNN and the 3D large scene segmentation dataset S3DIS, our model achieves highly competitive performance metrics. These results not only validate PointAMaLR's effectiveness in multi-scale semantic understanding but also underscore its practical applicability in real-world scenarios.

cs.GR↗

arXiv2025

Quantifying the Optimization and Generalization Advantages of Graph Neural Networks Over Multilayer Perceptrons

Graph neural networks (GNNs) have demonstrated remarkable capabilities in learning from graph-structured data, often outperforming traditional Multilayer Perceptrons (MLPs) in numerous graph-based tasks. Although existing works have demonstrated the benefits of graph convolution through Laplacian smoothing, expressivity or separability, there remains a lack of quantitative analysis comparing GNNs and MLPs from an optimization and generalization perspective. This study aims to address this gap by examining the role of graph convolution through feature learning theory. Using a signal-noise data model, we conduct a comparative analysis of the optimization and generalization between two-layer graph convolutional networks (GCNs) and their MLP counterparts. Our approach tracks the trajectory of signal learning and noise memorization in GNNs, characterizing their post-training generalization. We reveal that GNNs significantly prioritize signal learning, thus enhancing the regime of {low test error} over MLPs by $D^{q-2}$ times, where $D$ denotes a node's expected degree and $q$ is the power of ReLU activation function with $q>2$. This finding highlights a substantial and quantitative discrepancy between GNNs and MLPs in terms of optimization and generalization, a conclusion further supported by our empirical simulations on both synthetic and real-world datasets.

cs.LG↗

arXiv2025

ACE: A Cardinality Estimator for Set-Valued Queries

Cardinality estimation is a fundamental functionality in database systems. Most existing cardinality estimators focus on handling predicates over numeric or categorical data. They have largely omitted an important data type, set-valued data, which frequently occur in contemporary applications such as information retrieval and recommender systems. The few existing estimators for such data either favor high-frequency elements or rely on a partial independence assumption, which limits their practical applicability. We propose ACE, an Attention-based Cardinality Estimator for estimating the cardinality of queries over set-valued data. We first design a distillation-based data encoder to condense the dataset into a compact matrix. We then design an attention-based query analyzer to capture correlations among query elements. To handle variable-sized queries, a pooling module is introduced, followed by a regression model (MLP) to generate final cardinality estimates. We evaluate ACE on three datasets with varying query element distributions, demonstrating that ACE outperforms the state-of-the-art competitors in terms of both accuracy and efficiency.

cs.DB↗

arXiv2025

SemaSK: Answering Semantics-aware Spatial Keyword Queries with Large Language Models

Geo-textual objects, i.e., objects with both spatial and textual attributes, such as points-of-interest or web documents with location tags, are prevalent and fuel a range of location-based services. Existing spatial keyword querying methods that target such data have focused primarily on efficiency and often involve proposals for index structures for efficient query processing. In these studies, due to challenges in measuring the semantic relevance of textual data, query constraints on the textual attributes are largely treated as a keyword matching process, ignoring richer query and data semantics. To advance the semantic aspects, we propose a system named SemaSK that exploits the semantic capabilities of large language models to retrieve geo-textual objects that are more semantically relevant to a query. Experimental results on a real dataset offer evidence of the effectiveness of the system, and a system demonstration is presented in this paper.

cs.DB↗

arXiv2025

From Dense to Sparse: Event Response for Enhanced Residential Load Forecasting

Residential load forecasting (RLF) is crucial for resource scheduling in power systems. Most existing methods utilize all given load records (dense data) to indiscriminately extract the dependencies between historical and future time series. However, there exist important regular patterns residing in the event-related associations among different appliances (sparse knowledge), which have yet been ignored. In this paper, we propose an Event-Response Knowledge Guided approach (ERKG) for RLF by incorporating the estimation of electricity usage events for different appliances, mining event-related sparse knowledge from the load series. With ERKG, the event-response estimation enables portraying the electricity consumption behaviors of residents, revealing regular variations in appliance operational states. To be specific, ERKG consists of knowledge extraction and guidance: i) a forecasting model is designed for the electricity usage events by estimating appliance operational states, aiming to extract the event-related sparse knowledge; ii) a novel knowledge-guided mechanism is established by fusing such state estimates of the appliance events into the RLF model, which can give particular focuses on the patterns of users' electricity consumption behaviors. Notably, ERKG can flexibly serve as a plug-in module to boost the capability of existing forecasting models by leveraging event response. In numerical experiments, extensive comparisons and ablation studies have verified the effectiveness of our ERKG, e.g., over 8% MAE can be reduced on the tested state-of-the-art forecasting models.

cs.LG↗

arXiv2024

Faithful and Accurate Self-Attention Attribution for Message Passing Neural Networks via the Computation Tree Viewpoint

The self-attention mechanism has been adopted in various popular message passing neural networks (MPNNs), enabling the model to adaptively control the amount of information that flows along the edges of the underlying graph. Such attention-based MPNNs (Att-GNNs) have also been used as a baseline for multiple studies on explainable AI (XAI) since attention has steadily been seen as natural model interpretations, while being a viewpoint that has already been popularized in other domains (e.g., natural language processing and computer vision). However, existing studies often use naive calculations to derive attribution scores from attention, undermining the potential of attention as interpretations for Att-GNNs. In our study, we aim to fill the gap between the widespread usage of Att-GNNs and their potential explainability via attention. To this end, we propose GATT, edge attribution calculation method for self-attention MPNNs based on the computation tree, a rooted tree that reflects the computation process of the underlying model. Despite its simplicity, we empirically demonstrate the effectiveness of GATT in three aspects of model explanation: faithfulness, explanation accuracy, and case studies by using both synthetic and real-world benchmark datasets. In all cases, the results demonstrate that GATT greatly improves edge attribution scores, especially compared to the previous naive approach. Our code is available at https://github.com/jordan7186/GAtt.

cs.LG↗

arXiv2024

Exploring Progress in Multivariate Time Series Forecasting: Comprehensive Benchmarking and Heterogeneity Analysis

Multivariate Time Series (MTS) analysis is crucial to understanding and managing complex systems, such as traffic and energy systems, and a variety of approaches to MTS forecasting have been proposed recently. However, we often observe inconsistent or seemingly contradictory performance findings across different studies. This hinders our understanding of the merits of different approaches and slows down progress. We address the need for means of assessing MTS forecasting proposals reliably and fairly, in turn enabling better exploitation of MTS as seen in different applications. Specifically, we first propose BasicTS+, a benchmark designed to enable fair, comprehensive, and reproducible comparison of MTS forecasting solutions. BasicTS+ establishes a unified training pipeline and reasonable settings, enabling an unbiased evaluation. Second, we identify the heterogeneity across different MTS as an important consideration and enable classification of MTS based on their temporal and spatial characteristics. Disregarding this heterogeneity is a prime reason for difficulties in selecting the most promising technical directions. Third, we apply BasicTS+ along with rich datasets to assess the capabilities of more than 45 MTS forecasting solutions. This provides readers with an overall picture of the cutting-edge research on MTS forecasting. The code can be accessed at https://github.com/GestaltCogTeam/BasicTS.

cs.LG↗

arXiv2024

Centrality-Based Node Feature Augmentation for Robust Network Alignment

Network alignment (NA) is the task of discovering node correspondences across multiple networks. Although NA methods have achieved remarkable success in a myriad of scenarios, their effectiveness is not without additional information such as prior anchor links and/or node features, which may not always be available due to privacy concerns or access restrictions. To tackle this challenge, we propose Grad-Align+, a novel NA method built upon a recent state-of-the-art NA method, the so-called Grad-Align, that gradually discovers a part of node pairs until all node pairs are found. In designing Grad-Align+, we account for how to augment node features in the sense of performing the NA task and how to design our NA method by maximally exploiting the augmented node features. To achieve this goal, Grad-Align+ consists of three key components: 1) centrality-based node feature augmentation (CNFA), 2) graph neural network (GNN)-aided embedding similarity calculation alongside the augmented node features, and 3) gradual NA with similarity calculation using aligned cross-network neighbor-pairs (ACNs). Through comprehensive experiments, we demonstrate that Grad-Align+ exhibits (a) the superiority over benchmark NA methods, (b) empirical validations as well as our theoretical findings to see the effectiveness of CNFA, (c) the influence of each component, (d) the robustness to network noises, and (e) the computational efficiency.

cs.SI↗

arXiv2024

LAMP: Learnable Meta-Path Guided Adversarial Contrastive Learning for Heterogeneous Graphs

Heterogeneous graph neural networks (HGNNs) have significantly propelled the information retrieval (IR) field. Still, the effectiveness of HGNNs heavily relies on high-quality labels, which are often expensive to acquire. This challenge has shifted attention towards Heterogeneous Graph Contrastive Learning (HGCL), which usually requires pre-defined meta-paths. However, our findings reveal that meta-path combinations significantly affect performance in unsupervised settings, an aspect often overlooked in current literature. Existing HGCL methods have considerable variability in outcomes across different meta-path combinations, thereby challenging the optimization process to achieve consistent and high performance. In response, we introduce \textsf{LAMP} (\underline{\textbf{L}}earn\underline{\textbf{A}}ble \underline{\textbf{M}}eta-\underline{\textbf{P}}ath), a novel adversarial contrastive learning approach that integrates various meta-path sub-graphs into a unified and stable structure, leveraging the overlap among these sub-graphs. To address the denseness of this integrated sub-graph, we propose an adversarial training strategy for edge pruning, maintaining sparsity to enhance model performance and robustness. \textsf{LAMP} aims to maximize the difference between meta-path and network schema views for guiding contrastive learning to capture the most meaningful information. Our extensive experimental study conducted on four diverse datasets from the Heterogeneous Graph Benchmark (HGB) demonstrates that \textsf{LAMP} significantly outperforms existing state-of-the-art unsupervised models in terms of accuracy and robustness.

cs.LG↗

arXiv2024

Unveiling the 3D Morphology of Epitaxial GaAs/AlGaAs Quantum Dots

Strain-free GaAs/AlGaAs semiconductor quantum dots (QDs) grown by droplet etching and nanohole infilling (DENI) are highly promising candidates for the on-demand generation of indistinguishable and entangled photon sources. The spectroscopic fingerprint and quantum optical properties of QDs are significantly influenced by their morphology. The effects of nanohole geometry and infilled material on the exciton binding energies and fine structure splitting are well understood. However, a comprehensive understanding of GaAs/AlGaAs QD morphology remains elusive. To address this, we employ high-resolution scanning transmission electron microscopy (STEM) and reverse engineering through selective chemical etching and atomic force microscopy (AFM). Cross-sectional STEM of uncapped QDs reveals an inverted conical nanohole with Al-rich sidewalls and defect-free interfaces. Subsequent selective chemical etching and AFM measurements further reveal asymmetries in element distribution. This study enhances the understanding of DENI QD morphology and provides a fundamental three-dimensional structural model for simulating and optimizing their optoelectronic properties.

quant-ph↗

arXiv2024

Exact analytical algorithm for solvent accessible surface area and derivatives in implicit solvent molecular simulations on GPUs

In this paper, we present dSASA (differentiable SASA), an exact geometric method to calculate solvent accessible surface area (SASA) analytically along with atomic derivatives on GPUs. The atoms in a molecule are first assigned to tetrahedra in groups of four atoms by Delaunay tetrahedrization adapted for efficient GPU implementation and the SASA values for atoms and molecules are calculated based on the tetrahedrization information and inclusion-exclusion method. The SASA values from the numerical icosahedral-based method can be reproduced with more than 98% accuracy for both proteins and RNAs. Having been implemented on GPUs and incorporated into the software Amber, we can apply dSASA to implicit solvent molecular dynamics simulations with inclusion of this nonpolar term. The current GPU version of GB/SA simulations has been accelerated up to nearly 20-fold compared to the CPU version, outperforming LCPO, a commonly used, fast algorithm for calculating SASA, as the system size increases. While we focus on the accuracy of the SASA calculations for proteins and nucleic acids, we also demonstrate stable GB/SA MD mini-protein simulations.

q-bio.BM↗

arXiv2024

Deep Structural Knowledge Exploitation and Synergy for Estimating Node Importance Value on Heterogeneous Information Networks

Node importance estimation problem has been studied conventionally with homogeneous network topology analysis. To deal with network heterogeneity, a few recent methods employ graph neural models to automatically learn diverse sources of information. However, the major concern revolves around that their full adaptive learning process may lead to insufficient information exploration, thereby formulating the problem as the isolated node value prediction with underperformance and less interpretability. In this work, we propose a novel learning framework: SKES. Different from previous automatic learning designs, SKES exploits heterogeneous structural knowledge to enrich the informativeness of node representations. Based on a sufficiently uninformative reference, SKES estimates the importance value for any input node, by quantifying its disparity against the reference. This establishes an interpretable node importance computation paradigm. Furthermore, SKES dives deep into the understanding that "nodes with similar characteristics are prone to have similar importance values" whilst guaranteeing that such informativeness disparity between any different nodes is orderly reflected by the embedding distance of their associated latent features. Extensive experiments on three widely-evaluated benchmarks demonstrate the performance superiority of SKES over several recent competing methods.

cs.SI↗

arXiv2023

PointJEM: Self-supervised Point Cloud Understanding for Reducing Feature Redundancy via Joint Entropy Maximization

Most deep learning-based point cloud processing methods are supervised and require large scale of labeled data. However, manual labeling of point cloud data is laborious and time-consuming. Self-supervised representation learning can address the aforementioned issue by learning robust and generalized representations from unlabeled datasets. Nevertheless, the embedded features obtained by representation learning usually contain redundant information, and most current methods reduce feature redundancy by linear correlation constraints. In this paper, we propose PointJEM, a self-supervised representation learning method applied to the point cloud field. PointJEM comprises an embedding scheme and a loss function based on joint entropy. The embedding scheme divides the embedding vector into different parts, each part can learn a distinctive feature. To reduce redundant information in the features, PointJEM maximizes the joint entropy between the different parts, thereby rendering the learned feature variables pairwise independent. To validate the effectiveness of our method, we conducted experiments on multiple datasets. The results demonstrate that our method can significantly reduce feature redundancy beyond linear correlation. Furthermore, PointJEM achieves competitive performance in downstream tasks such as classification and segmentation.

cs.CV↗

arXiv2023

PointMoment:Mixed-Moment-based Self-Supervised Representation Learning for 3D Point Clouds

Large and rich data is a prerequisite for effective training of deep neural networks. However, the irregularity of point cloud data makes manual annotation time-consuming and laborious. Self-supervised representation learning, which leverages the intrinsic structure of large-scale unlabelled data to learn meaningful feature representations, has attracted increasing attention in the field of point cloud research. However, self-supervised representation learning often suffers from model collapse, resulting in reduced information and diversity of the learned representation, and consequently degrading the performance of downstream tasks. To address this problem, we propose PointMoment, a novel framework for point cloud self-supervised representation learning that utilizes a high-order mixed moment loss function rather than the conventional contrastive loss function. Moreover, our framework does not require any special techniques such as asymmetric network architectures, gradient stopping, etc. Specifically, we calculate the high-order mixed moment of the feature variables and force them to decompose into products of their individual moment, thereby making multiple variables more independent and minimizing the feature redundancy. We also incorporate a contrastive learning approach to maximize the feature invariance under different data augmentations of the same point cloud. Experimental results show that our approach outperforms previous unsupervised learning methods on the downstream task of 3D point cloud classification and segmentation.

cs.CV↗