arXiv subjects

Xin You

Publications and source records attributed to Xin You.

At least 19 recordsLinked to original sources

arXiv2026

Vision as Unified Multimodal Generation

We formulate computer vision as unified multimodal generation, where heterogeneous visual tasks are expressed in the native text and image generation spaces of a unified multimodal model, without task-specific architectures. Under this formulation, SenseNova-Vision uses natural-language instructions and optional visual prompts to specify tasks, target regions or views, and decoding conventions, and generates responses as text for symbolic outputs, images for dense spatial predictions, or mixed text-and-image outputs for compositional tasks. To support large-scale training, we convert diverse computer vision annotations into instruction-response examples compatible with these generation spaces, resulting in the SenseNova-Vision Corpus, a computer-vision instruction-response corpus spanning text, image, and mixed targets. Starting from an off-the-shelf pretrained unified multimodal model, SenseNova-Vision is trained primarily on this corpus, with auxiliary multimodal data used as a capability-preserving mixture, and requires no task-specific prediction heads or architectural modifications. The resulting model covers a broad range of vision tasks, including detection, OCR, keypoint estimation, segmentation, depth estimation, surface normal prediction, point maps, and camera pose estimation, while supporting language-defined variants that combine category, color, region, and other visual cues. Experiments show that a single unified model can match leading task-specialized systems across structured visual understanding, dense geometric prediction, segmentation, and multi-view visual geometry. These results suggest unified multimodal generation as a scalable route for integrating computer vision capabilities into general-purpose foundation models. The model and corpus are publicly available.

cs.CV↗

arXiv2026

Towards Voxel Spacing Consistency for Medical Image Segmentation

Volumetric medical image segmentation is essential for both preoperative diagnosis and intraoperative guidance. While recent years have witnessed rapid progress in segmentation architectures, comparatively little attention is paid to the physical voxel spacing of anatomical data. Indeed, volumetric image resampling is a ubiquitous preprocessing step before segmentation, yet its interaction with downstream segmentation has not been systematically exploited. In this work, we study the correlation between image resampling and segmentation, and propose Consispace, a semantic-aware resampling framework that achieves consistent voxel spacing in the axial direction while preserving anatomical and semantic consistency. Consispace introduces an ODE-based anatomical constraint to model inter-slice dynamics with a continuous interpolator, enabling faithful reconstruction under complex anatomical transitions beyond discrete interpolation. To further couple resampling with segmentation objectives, we leverage dense features from a pretrained vision model to build intra-slice semantic correlation maps and inject class-wise semantic consistency via feature reweighting during resampling. Both intra-slice and inter-slice constraints are integrated into an implicit neural network, supporting arbitrary-scale resampling. Extensive experiments on multiple datasets demonstrate that Consispace achieves superior reconstruction quality and perceptual fidelity, produces smoother inter-slice anatomy, and improves downstream segmentation performance when used as a preprocessing step.

cs.CV↗

arXiv2026

TriALS: Triphasic-Aided Liver Lesion Segmentation Benchmark in Non-Contrast CT

Automated segmentation of liver lesions on non-contrast computed tomography (NCCT) is clinically important but fundamentally challenging, particularly in low-resource settings across Africa and Asia where contrast agents are frequently unavailable. Progress has been limited by the absence of annotated NCCT benchmarks. Here we describe the TriALS challenge for automated liver lesion segmentation under contrast-limited conditions, supported by a multi-centre dataset of 150 cases with four-phase CT acquisitions (600 volumes) from Egyptian and Chinese institutions. Algorithms were evaluated on 70 cases from three institutions, including an independent external cohort. The top-performing method achieved a mean venous-phase Dice of 0.754, consistent with human-level performance, yet dropped to 0.57 on NCCT. On external validation, the leading method outperformed off-the-shelf models by up to 28% in Dice on NCCT. Algorithm performance was most strongly predicted by training data scale and pre-training strategy. A cross-year comparison exposed a persistent perceptual barrier on NCCT that scaling pre-training alone cannot overcome. Data, annotations, and code are available at https://github.com/xmed-lab/TriALS.

cs.CV↗

arXiv2026

MLOW: Interpretable Low-Rank Frequency Magnitude Decomposition of Multiple Effects for Time Series Forecasting

Separating multiple effects in time series is fundamental yet challenging for time-series forecasting (TSF). However, existing TSF models cannot effectively learn interpretable multi-effect decomposition by their smoothing-based temporal techniques. Here, a new interpretable frequency-based decomposition pipeline MLOW captures the insight: a time series can be represented as a magnitude spectrum multiplied by the corresponding phase-aware basis functions, and the magnitude spectrum distribution of a time series always exhibits observable patterns for different effects. MLOW learns a low-rank representation of the magnitude spectrum to capture dominant trending and seasonal effects. We explore low-rank methods, including PCA, NMF, and Semi-NMF, and find that none can simultaneously achieve interpretable, efficient and generalizable decomposition. Thus, we propose hyperplane-nonnegative matrix factorization (Hyperplane-NMF). Further, to address the frequency (spectral) leakage restricting high-quality low-rank decomposition, MLOW enables a flexible selection of input horizons and frequency levels via a mathematical mechanism. Visual analysis demonstrates that MLOW enables interpretable and hierarchical multiple-effect decomposition, robust to noises. It can also enable plug-and-play in existing TSF backbones with remarkable performance improvement but minimal architectural modifications.

cs.LG↗

arXiv2026

TubeMLLM: A Foundation Model for Topology Knowledge Exploration in Vessel-like Anatomy

Modeling medical vessel-like anatomy is challenging due to its intricate topology and sensitivity to dataset shifts. Consequently, task-specific models often suffer from topological inconsistencies, including artificial disconnections and spurious merges. Motivated by the promise of multimodal large language models (MLLMs) for zero-shot generalization, we propose TubeMLLM, a unified foundation model that couples structured understanding with controllable generation for medical vessel-like anatomy. By integrating topological priors through explicit natural language prompting and aligning them with visual representations in a shared-attention architecture, TubeMLLM significantly enhances topology-aware perception. Furthermore, we construct TubeMData, a pionner multimodal benchmark comprising comprehensive topology-centric tasks, and introduce an adaptive loss weighting strategy to emphasize topology-critical regions during training. Extensive experiments on fifteen diverse datasets demonstrate our superiority. Quantitatively, TubeMLLM achieves state-of-the-art out-of-distribution performance, substantially reducing global topological discrepancies on color fundus photography (decreasing the $\beta_{0}$ number error from 37.42 to 8.58 compared to baselines). Notably, TubeMLLM exhibits exceptional zero-shot cross-modality transferring ability on unseen X-ray angiography, achieving a Dice score of 67.50% while significantly reducing the $\beta_{0}$ error to 1.21. TubeMLLM also maintains robustness against degradations such as blur, noise, and low resolution. Furthermore, in topology-aware understanding tasks, the model achieves 97.38% accuracy in evaluating mask topological quality, significantly outperforming standard vision-language baselines.

cs.CV↗

arXiv2026

MMNavAgent: Multi-Magnification WSI Navigation Agent for Clinically Consistent Whole-Slide Analysis

Recent AI navigation approaches aim to improve Whole-Slide Image (WSI) diagnosis by modeling spatial exploration and selecting diagnostically relevant regions, yet most operate at a single fixed magnification or rely on predefined magnification traversal. In clinical practice, pathologists examine slides across multiple magnifications and selectively inspect only necessary scales, dynamically integrating global and cellular evidence in a sequential manner. This mismatch prevents existing methods from modeling cross-magnification interactions and adaptive magnification selection inherent to real diagnostic workflows. To these, we propose a clinically consistent Multi-Magnification WSI Navigation Agent (MMNavAgent) that explicitly models multi magnification interaction and adaptive magnification selection. Specifically, we introduce a Cross-Magnification navigation Tool (CMT) that aggregates contextual information from adjacent magnifications to enhance discriminative representations along the navigation path. We further introduce a Magnification Selection Tool (MST) that leverages memory-driven reasoning within the agent framework to enable interactive and adaptive magnification selection, mimicking the sequential decision process of pathologists. Extensive experiments on a public dataset demonstrate improved diagnostic performance, with 1.45% gain of AUC and 2.93% gain of BACC over a non-agent baseline. Code will be public upon acceptance.

cs.CV↗

arXiv2025

LOw-cOst yet High-Performant Sparse Matrix-Matrix Multiplication on Arm SME Architectures

Sparse matrix-dense matrix multiplication (SpMM) is a critical kernel in both scientific computing and emerging graph learning workloads. The recent Armv9 architecture introduces Scalable Matrix Extension (SME), enabling tile-based matrix operations with high throughput. However, effectively exploiting both SME and traditional SIMD resources for unstructured sparse workloads remains an open challenge. To address this, we propose LOOPS, a hybrid execution framework that combines row-wise CSR-part with vector-wise BCSR-part layout, enabling cooperative utilization of vector instructions (NEON) and Scalable Matrix Extension (SME) resources. LOOPS supports multi-precision SpMM across FP64, FP32, and FP16 via an adaptive two-level parallelization scheme guided by a lightweight performance model. Experimental results on the entire SuiteSparse on an Apple's M4Pro CPU show that LOOPS achieves average speedups of 9.93$\times$ (FP32)/14.4$\times$ (FP64) against the CPU baseline TACO and 71.3$\times$ (FP32)/54.8$\times$ (FP64) with respect to Armadillo. A comparison of LOOPS running on the same CPU with two GPU methods (cuSPARSE, Magicube) executed on an NVIDIA A100 GPU show average speedups for LOOPS between 19.8$\times$ and 33.5$\times$, depending on the precision. Notably, LOOPS delivers significantly better energy efficiency than the GPU codes on the A100 GPU.

cs.DC↗

arXiv2025

PRAGMA: A Profiling-Reasoned Multi-Agent Framework for Automatic Kernel Optimization

Designing high-performance kernels requires expert-level tuning and a deep understanding of hardware characteristics. Recent advances in large language models (LLMs) have enabled automated kernel generation, yet most existing systems rely solely on correctness or execution time feedback, lacking the ability to reason about low-level performance bottlenecks. In this paper, we introduce PRAGMA, a profile-guided AI kernel generation framework that integrates execution feedback and fine-grained hardware profiling into the reasoning loop. PRAGMA enables LLMs to identify performance bottlenecks, preserve historical best versions, and iteratively refine code quality. We evaluate PRAGMA on KernelBench, covering GPU and CPU backends. Results show that PRAGMA consistently outperforms baseline AIKG without profiling enabled and achieves 2.81$\times$ and 2.30$\times$ averaged speedups against Torch on CPU and GPU platforms, respectively.

cs.DC↗

arXiv2025

TopoSculpt: Betti-Steered Topological Sculpting of 3D Fine-grained Tubular Shapes

Medical tubular anatomical structures are inherently three-dimensional conduits with lumens, enclosing walls, and complex branching topologies. Accurate reconstruction of their geometry and topology is crucial for applications such as bronchoscopic navigation and cerebral arterial connectivity assessment. Existing methods often rely on voxel-wise overlap measures, which fail to capture topological correctness and completeness. Although topology-aware losses and persistent homology constraints have shown promise, they are usually applied patch-wise and cannot guarantee global preservation or correct geometric errors at inference. To address these limitations, we propose a novel TopoSculpt, a framework for topological refinement of 3D fine-grained tubular structures. TopoSculpt (i) adopts a holistic whole-region modeling strategy to capture full spatial context, (ii) first introduces a Topological Integrity Betti (TIB) constraint that jointly enforces Betti number priors and global integrity, and (iii) employs a curriculum refinement scheme with persistent homology to progressively correct errors from coarse to fine scales. Extensive experiments on challenging pulmonary airway and Circle of Willis datasets demonstrate substantial improvements in both geometry and topology. For instance, $\beta_{0}$ errors are reduced from 69.00 to 3.40 on the airway dataset and from 1.65 to 0.30 on the CoW dataset, with Tree length detected and branch detected rates improving by nearly 10\%. These results highlight the effectiveness of TopoSculpt in correcting critical topological errors and advancing the high-fidelity modeling of complex 3D tubular anatomy. The project homepage is available at: https://github.com/Puzzled-Hui/TopoSculpt.

cs.CV↗

arXiv2025

From Pixels to Pathology: Restoration Diffusion for Diagnostic-Consistent Virtual IHC

Hematoxylin and eosin (H&E) staining is the clinical standard for assessing tissue morphology, but it lacks molecular-level diagnostic information. In contrast, immunohistochemistry (IHC) provides crucial insights into biomarker expression, such as HER2 status for breast cancer grading, but remains costly and time-consuming, limiting its use in time-sensitive clinical workflows. To address this gap, virtual staining from H&E to IHC has emerged as a promising alternative, yet faces two core challenges: (1) Lack of fair evaluation of synthetic images against misaligned IHC ground truths, and (2) preserving structural integrity and biological variability during translation. To this end, we present an end-to-end framework encompassing both generation and evaluation in this work. We introduce Star-Diff, a structure-aware staining restoration diffusion model that reformulates virtual staining as an image restoration task. By combining residual and noise-based generation pathways, Star-Diff maintains tissue structure while modeling realistic biomarker variability. To evaluate the diagnostic consistency of the generated IHC patches, we propose the Semantic Fidelity Score (SFS), a clinical-grading-task-driven metric that quantifies class-wise semantic degradation based on biomarker classification accuracy. Unlike pixel-level metrics such as SSIM and PSNR, SFS remains robust under spatial misalignment and classifier uncertainty. Experiments on the BCI dataset demonstrate that Star-Diff achieves state-of-the-art (SOTA) performance in both visual fidelity and diagnostic relevance. With rapid inference and strong clinical alignment,it presents a practical solution for applications such as intraoperative virtual IHC synthesis.

eess.IV↗

arXiv2025

Fourier Basis Mapping: A Time-Frequency Learning Framework for Time Series Forecasting

The integration of Fourier transform and deep learning opens new avenues for time series forecasting. We reconsider the Fourier transform from a basis functions perspective. Specifically, the real and imaginary parts of the frequency components can be regarded as the coefficients of cosine and sine basis functions at tiered frequency levels, respectively. We find that existing Fourier-based methods face inconsistent starting cycles and inconsistent series length issues. They fail to interpret frequency components precisely and overlook temporal information. Accordingly, the novel Fourier Basis Mapping (FBM) method addresses these issues by integrating time-frequency features through Fourier basis expansion and mapping in the time-frequency space. Our approach extracts explicit frequency features while preserving temporal characteristics. FBM supports plug-and-play integration with various types of neural networks by only adjusting the first initial projection layer for better performance. First, we propose FBM-L, FBM-NL, and FBM-NP to enhance linear, MLP-based, and Transformer-based models, respectively, demonstrating the effectiveness of time-frequency features. Next, we propose a synergetic model architecture, termed FBM-S, which decomposes the seasonal, trend, and interaction effects into three separate blocks, each designed to model time-frequency features in a specialized manner. Finally, we introduce several techniques tailored for time-frequency features, including interaction masking, centralization, patching, rolling window projection, and multi-scale down-sampling. The results are validated on diverse real-world datasets for both long-term and short-term forecasting tasks with SOTA performance.

cs.LG↗

arXiv2025

FB-Diff: Fourier Basis-guided Diffusion for Temporal Interpolation of 4D Medical Imaging

The temporal interpolation task for 4D medical imaging, plays a crucial role in clinical practice of respiratory motion modeling. Following the simplified linear-motion hypothesis, existing approaches adopt optical flow-based models to interpolate intermediate frames. However, realistic respiratory motions should be nonlinear and quasi-periodic with specific frequencies. Intuited by this property, we resolve the temporal interpolation task from the frequency perspective, and propose a Fourier basis-guided Diffusion model, termed FB-Diff. Specifically, due to the regular motion discipline of respiration, physiological motion priors are introduced to describe general characteristics of temporal data distributions. Then a Fourier motion operator is elaborately devised to extract Fourier bases by incorporating physiological motion priors and case-specific spectral information in the feature space of Variational Autoencoder. Well-learned Fourier bases can better simulate respiratory motions with motion patterns of specific frequencies. Conditioned on starting and ending frames, the diffusion model further leverages well-learned Fourier bases via the basis interaction operator, which promotes the temporal interpolation task in a generative manner. Extensive results demonstrate that FB-Diff achieves state-of-the-art (SOTA) perceptual performance with better temporal consistency while maintaining promising reconstruction metrics. Codes are available.

eess.IV↗

arXiv2025

HASD: Hierarchical Adaption for pathology Slide-level Domain-shift

Domain shift is a critical problem for pathology AI as pathology data is heavily influenced by center-specific conditions. Current pathology domain adaptation methods focus on image patches rather than WSI, thus failing to capture global WSI features required in typical clinical scenarios. In this work, we address the challenges of slide-level domain shift by proposing a Hierarchical Adaptation framework for Slide-level Domain-shift (HASD). HASD achieves multi-scale feature consistency and computationally efficient slide-level domain adaptation through two key components: (1) a hierarchical adaptation framework that integrates a Domain-level Alignment Solver for feature alignment, a Slide-level Geometric Invariance Regularization to preserve the morphological structure, and a Patch-level Attention Consistency Regularization to maintain local critical diagnostic cues; and (2) a prototype selection mechanism that reduces computational overhead. We validate our method on two slide-level tasks across five datasets, achieving a 4.1\% AUROC improvement in a Breast Cancer HER2 Grading cohort and a 3.9\% C-index gain in a UCEC survival prediction cohort. Our method provides a practical and reliable slide-level domain adaption solution for pathology institutions, minimizing both computational and annotation costs.

cs.AI↗

arXiv2025

Shape-aware Sampling Matters in the Modeling of Multi-Class Tubular Structures

Accurate multi-class tubular modeling is critical for precise lesion localization and optimal treatment planning. Deep learning methods enable automated shape modeling by prioritizing volumetric overlap accuracy. However, the inherent complexity of fine-grained semantic tubular shapes is not fully emphasized by overlap accuracy, resulting in reduced topological preservation. To address this, we propose the Shapeaware Sampling (SAS), which optimizes patchsize allocation for online sampling and extracts a topology-preserved skeletal representation for the objective function. Fractal Dimension-based Patchsize (FDPS) is first introduced to quantify semantic tubular shape complexity through axis-specific fractal dimension analysis. Axes with higher fractal complexity are then sampled with smaller patchsizes to capture fine-grained features and resolve structural intricacies. In addition, Minimum Path-Cost Skeletonization (MPC-Skel) is employed to sample topologically consistent skeletal representations of semantic tubular shapes for skeleton-weighted objective functions. MPC-Skel reduces artifacts from conventional skeletonization methods and directs the focus to critical topological regions, enhancing tubular topology preservation. SAS is computationally efficient and easily integrable into optimization pipelines. Evaluation on two semantic tubular datasets showed consistent improvements in both volumetric overlap and topological integrity metrics.

eess.IV↗

arXiv2025

Temporal Differential Fields for 4D Motion Modeling via Image-to-Video Synthesis

Temporal modeling on regular respiration-induced motions is crucial to image-guided clinical applications. Existing methods cannot simulate temporal motions unless high-dose imaging scans including starting and ending frames exist simultaneously. However, in the preoperative data acquisition stage, the slight movement of patients may result in dynamic backgrounds between the first and last frames in a respiratory period. This additional deviation can hardly be removed by image registration, thus affecting the temporal modeling. To address that limitation, we pioneeringly simulate the regular motion process via the image-to-video (I2V) synthesis framework, which animates with the first frame to forecast future frames of a given length. Besides, to promote the temporal consistency of animated videos, we devise the Temporal Differential Diffusion Model to generate temporal differential fields, which measure the relative differential representations between adjacent frames. The prompt attention layer is devised for fine-grained differential fields, and the field augmented layer is adopted to better interact these fields with the I2V framework, promoting more accurate temporal variation of synthesized videos. Extensive results on ACDC cardiac and 4D Lung datasets reveal that our approach simulates 4D videos along the intrinsic motion trajectory, rivaling other competitive methods on perceptual similarity and temporal consistency. Codes will be available soon.

cs.CV↗

arXiv2025

Multi-Class Segmentation of Aortic Branches and Zones in Computed Tomography Angiography: The AortaSeg24 Challenge

Multi-class segmentation of the aorta in computed tomography angiography (CTA) scans is essential for diagnosing and planning complex endovascular treatments for patients with aortic dissections. However, existing methods reduce aortic segmentation to a binary problem, limiting their ability to measure diameters across different branches and zones. Furthermore, no open-source dataset is currently available to support the development of multi-class aortic segmentation methods. To address this gap, we organized the AortaSeg24 MICCAI Challenge, introducing the first dataset of 100 CTA volumes annotated for 23 clinically relevant aortic branches and zones. This dataset was designed to facilitate both model development and validation. The challenge attracted 121 teams worldwide, with participants leveraging state-of-the-art frameworks such as nnU-Net and exploring novel techniques, including cascaded models, data augmentation strategies, and custom loss functions. We evaluated the submitted algorithms using the Dice Similarity Coefficient (DSC) and Normalized Surface Distance (NSD), highlighting the approaches adopted by the top five performing teams. This paper presents the challenge design, dataset details, evaluation metrics, and an in-depth analysis of the top-performing algorithms. The annotated dataset, evaluation code, and implementations of the leading methods are publicly available to support further research. All resources can be accessed at https://aortaseg24.grand-challenge.org.

eess.IV↗

arXiv2024

Topology-Aware Exploration of Circle of Willis for CTA and MRA: Segmentation, Detection, and Classification

The Circle of Willis (CoW) vessels is critical to connecting major circulations of the brain. The topology of the vascular structure is clinical significance to evaluate the risk, severity of the neuro-vascular diseases. The CoW has two representative angiographic imaging modalities, computed tomography angiography (CTA) and magnetic resonance angiography (MRA). TopCow24 provided 125 paired CTA-MRA dataset for the analysis of CoW. To explore both CTA and MRA images in a unified framework to learn the inherent topology of Cow, we construct the universal dataset via independent intensity preprocess, followed by joint resampling and normarlization. Then, we utilize the topology-aware loss to enhance the topology completeness of the CoW and the discrimination between different classes. A complementary topology-aware refinement is further conducted to enhance the connectivity within the same class. Our method was evaluated on all the three tasks and two modalities, achieving competitive results. In the final test phase of TopCow24 Challenge, we achieved the second place in the CTA-Seg-Task, the third palce in the CTA-Box-Task, the first place in the CTA-Edg-Task, the second place in the MRA-Seg-Task, the third palce in the MRA-Box-Task, the second place in the MRA-Edg-Task.

eess.IV↗

arXiv2024

PASS:Test-Time Prompting to Adapt Styles and Semantic Shapes in Medical Image Segmentation

Test-time adaptation (TTA) has emerged as a promising paradigm to handle the domain shifts at test time for medical images from different institutions without using extra training data. However, existing TTA solutions for segmentation tasks suffer from (1) dependency on modifying the source training stage and access to source priors or (2) lack of emphasis on shape-related semantic knowledge that is crucial for segmentation tasks.Recent research on visual prompt learning achieves source-relaxed adaptation by extended parameter space but still neglects the full utilization of semantic features, thus motivating our work on knowledge-enriched deep prompt learning. Beyond the general concern of image style shifts, we reveal that shape variability is another crucial factor causing the performance drop. To address this issue, we propose a TTA framework called PASS (Prompting to Adapt Styles and Semantic shapes), which jointly learns two types of prompts: the input-space prompt to reformulate the style of the test image to fit into the pretrained model and the semantic-aware prompts to bridge high-level shape discrepancy across domains. Instead of naively imposing a fixed prompt, we introduce an input decorator to generate the self-regulating visual prompt conditioned on the input data. To retrieve the knowledge representations and customize target-specific shape prompts for each test sample, we propose a cross-attention prompt modulator, which performs interaction between target representations and an enriched shape prompt bank. Extensive experiments demonstrate the superior performance of PASS over state-of-the-art methods on multiple medical image segmentation datasets. The code is available at https://github.com/EndoluminalSurgicalVision-IMR/PASS.

cs.CV↗