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Xin Zhao

Publications and source records attributed to Xin Zhao.

At least 145 records · Page 8Linked to original sources
arXiv2022

Medical Matting: A New Perspective on Medical Segmentation with Uncertainty

It is difficult to accurately label ambiguous and complex shaped targets manually by binary masks. The weakness of binary mask under-expression is highlighted in medical image segmentation, where blurring is prevalent. In the case of multiple annotations, reaching a consensus for clinicians by binary masks is more challenging. Moreover, these uncertain areas are related to the lesions' structure and may contain anatomical information beneficial to diagnosis. However, current studies on uncertainty mainly focus on the uncertainty in model training and data labels. None of them investigate the influence of the ambiguous nature of the lesion itself.Inspired by image matting, this paper introduces alpha matte as a soft mask to represent uncertain areas in medical scenes and accordingly puts forward a new uncertainty quantification method to fill the gap of uncertainty research for lesion structure. In this work, we introduce a new architecture to generate binary masks and alpha mattes in a multitasking framework, which outperforms all state-of-the-art matting algorithms compared. The proposed uncertainty map is able to highlight the ambiguous regions and a novel multitasking loss weighting strategy we presented can improve performance further and demonstrate their concrete benefits. To fully-evaluate the effectiveness of our proposed method, we first labelled three medical datasets with alpha matte to address the shortage of available matting datasets in medical scenes and prove the alpha matte to be a more efficient labeling method than a binary mask from both qualitative and quantitative aspects.

cs.CV↗
arXiv2021

Sum-Rate Maximization of RIS-Aided Multi-User MIMO Systems With Statistical CSI

This paper investigates a reconfigurable intelligent surface (RIS)-aided multi-user multiple-input multiple-output (MIMO) system by considering only the statistical channel state information (CSI) at the base station (BS). We aim to maximize its sum-rate via the joint optimization of beamforming at the BS and phase shifts at the RIS. However, the multi-user MIMO transmissions and the spatial correlations make the optimization cumbersome. For tractability, a deterministic approximation is derived for the sum-rate under a large number of the reflecting elements. By adopting the approximate sum-rate for maximization, the optimal designs of the transmit beamforming and the phase shifts can be decoupled and solved in closed-forms individually. More specifically, the global optimality of the transmit beamforming can be guaranteed by using the water-filling algorithm and a sub-optimal solution of phase shifts can be obtained by using the projected gradient ascent (PGA) algorithm. By comparing to the case of the instantaneous CSI assumed at the BS, the proposed algorithm based on statistical CSI can achieve comparable performance but with much lower complexity and signaling overhead, which is more affordable and appealing for practical applications. Moreover, the impact of spatial correlation is thoroughly examined by using majorization theory.

cs.IT↗
arXiv2021

EMDS-7: Environmental Microorganism Image Dataset Seventh Version for Multiple Object Detection Evaluation

The Environmental Microorganism Image Dataset Seventh Version (EMDS-7) is a microscopic image data set, including the original Environmental Microorganism images (EMs) and the corresponding object labeling files in ".XML" format file. The EMDS-7 data set consists of 41 types of EMs, which has a total of 2365 images and 13216 labeled objects. The EMDS-7 database mainly focuses on the object detection. In order to prove the effectiveness of EMDS-7, we select the most commonly used deep learning methods (Faster-RCNN, YOLOv3, YOLOv4, SSD and RetinaNet) and evaluation indices for testing and evaluation. EMDS-7 is freely published for non-commercial purpose at: https://figshare.com/articles/dataset/EMDS-7_DataSet/16869571

cs.CV↗
arXiv2021

A Comprehensive Review of Image Analysis Methods for Microorganism Counting: From Classical Image Processing to Deep Learning Approaches

Microorganisms such as bacteria and fungi play essential roles in many application fields, like biotechnique, medical technique and industrial domain. Microorganism counting techniques are crucial in microorganism analysis, helping biologists and related researchers quantitatively analyze the microorganisms and calculate their characteristics, such as biomass concentration and biological activity. However, traditional microorganism manual counting methods, such as plate counting method, hemocytometry and turbidimetry, are time-consuming, subjective and need complex operations, which are difficult to be applied in large-scale applications. In order to improve this situation, image analysis is applied for microorganism counting since the 1980s, which consists of digital image processing, image segmentation, image classification and suchlike. Image analysis-based microorganism counting methods are efficient comparing with traditional plate counting methods. In this article, we have studied the development of microorganism counting methods using digital image analysis. Firstly, the microorganisms are grouped as bacteria and other microorganisms. Then, the related articles are summarized based on image segmentation methods. Each part of the article is reviewed by methodologies. Moreover, commonly used image processing methods for microorganism counting are summarized and analyzed to find common technological points. More than 144 papers are outlined in this article. In conclusion, this paper provides new ideas for the future development trend of microorganism counting, and provides systematic suggestions for implementing integrated microorganism counting systems in the future. Researchers in other fields can refer to the techniques analyzed in this paper.

eess.IV↗
arXiv2021

Observation of a strong correlation between the positive floating potential near the edge and plasma current on EXL-50 ECW plasma

Fully non-inductive plasma current start-up without the central solenoid in ECW plasma was used on EXL-50 Spherical Torus with a weak external vertical field (Bv). Generally, the number of electrons leaving to the vessel wall by the gradient Bt is larger than ions, and the positive potential was built up in plasma. The relationship between floating potential and the plasma current was studied using the Langmuir probes near the boundary. The results show that the floating potential is positive (about 200V) and has a strong correlation with plasma current. In open magnetic field, the plasma current is driven by the high energy electrons in preferential confinement, the plasma current and potential approximately positively correlated with total electron density. After forming the closed flux surface, the plasma current consists mainly of the ECW driven current, and potential is negatively correlated with plasma current. By actively adjusting the Bv, it demonstrated that the positive voltage is approximately inversely correlated with the Bv and plasma current (Ip). Considering that the plasma temperature near the boundary is quite low (~eV), the positive voltage near the boundary caused by the high-energy electron loss. Therefore, the measurements of the boundary potential are important for the study of high-energy electron confinement performance, noninductive plasma current start-up and current driven.

physics.plasm-ph↗
arXiv2021

An Indoor Crowd Movement Trajectory Benchmark Dataset

In recent years, technologies of indoor crowd positioning and movement data analysis have received widespread attention in the fields of reliability management, indoor navigation, and crowd behavior monitoring. However, only a few indoor crowd movement trajectory datasets are available to the public, thus restricting the development of related research and application. This paper contributes a new benchmark dataset of indoor crowd movement trajectories. This dataset records the movements of over 5000 participants at a three day large academic conference in a two story indoor venue. The conference comprises varied activities, such as academic seminars, business exhibitions, a hacking contest, interviews, tea breaks, and a banquet. The participants are divided into seven types according to participation permission to the activities. Some of them are involved in anomalous events, such as loss of items, unauthorized accesses, and equipment failures, forming a variety of spatial temporal movement patterns. In this paper, we first introduce the scenario design, entity and behavior modeling, and data generator of the dataset. Then, a detailed ground truth of the dataset is presented. Finally, we describe the process and experience of applying the dataset to the contest of ChinaVis Data Challenge 2019. Evaluation results of the 75 contest entries and the feedback from 359 contestants demonstrate that the dataset has satisfactory completeness, and usability, and can effectively identify the performance of methods, technologies, and systems for indoor trajectory analysis.

cs.OH↗
arXiv2021

Evaluating Effects of Background Stories on Graph Perception

A graph is an abstract model that represents relations among entities, for example, the interactions between characters in a novel. A background story endows entities and relations with real-world meanings and describes the semantics and context of the abstract model, for example, the actual story that the novel presents. Considering practical experience and prior research, human viewers who are familiar with the background story of a graph and those who do not know the background story may perceive the same graph differently. However, no previous research has adequately addressed this problem. This research paper thus presents an evaluation that investigated the effects of background stories on graph perception. Three hypotheses that focused on the role of visual focus areas, graph structure identification, and mental model formation on graph perception were formulated and guided three controlled experiments that evaluated the hypotheses using real-world graphs with background stories. An analysis of the resulting experimental data, which compared the performance of participants who read and did not read the background stories, obtained a set of instructive findings. First, having knowledge about a graph's background story influences participants' focus areas during interactive graph explorations. Second, such knowledge significantly affects one's ability to identify community structures but not high degree and bridge structures. Third, this knowledge influences graph recognition under blurred visual conditions. These findings can bring new considerations to the design of storytelling visualizations and interactive graph explorations.

cs.HC↗
arXiv2021

Unsupervised Domain Adaptation for Retinal Vessel Segmentation with Adversarial Learning and Transfer Normalization

Retinal vessel segmentation plays a key role in computer-aided screening, diagnosis, and treatment of various cardiovascular and ophthalmic diseases. Recently, deep learning-based retinal vessel segmentation algorithms have achieved remarkable performance. However, due to the domain shift problem, the performance of these algorithms often degrades when they are applied to new data that is different from the training data. Manually labeling new data for each test domain is often a time-consuming and laborious task. In this work, we explore unsupervised domain adaptation in retinal vessel segmentation by using entropy-based adversarial learning and transfer normalization layer to train a segmentation network, which generalizes well across domains and requires no annotation of the target domain. Specifically, first, an entropy-based adversarial learning strategy is developed to reduce the distribution discrepancy between the source and target domains while also achieving the objective of entropy minimization on the target domain. In addition, a new transfer normalization layer is proposed to further boost the transferability of the deep network. It normalizes the features of each domain separately to compensate for the domain distribution gap. Besides, it also adaptively selects those feature channels that are more transferable between domains, thus further enhancing the generalization performance of the network. We conducted extensive experiments on three regular fundus image datasets and an ultra-widefield fundus image dataset, and the results show that our approach yields significant performance gains compared to other state-of-the-art methods.

eess.IV↗
arXiv2021

A Comparison for Patch-level Classification of Deep Learning Methods on Transparent Environmental Microorganism Images: from Convolutional Neural Networks to Visual Transformers

Nowadays, analysis of Transparent Environmental Microorganism Images (T-EM images) in the field of computer vision has gradually become a new and interesting spot. This paper compares different deep learning classification performance for the problem that T-EM images are challenging to analyze. We crop the T-EM images into 8 * 8 and 224 * 224 pixel patches in the same proportion and then divide the two different pixel patches into foreground and background according to ground truth. We also use four convolutional neural networks and a novel ViT network model to compare the foreground and background classification experiments. We conclude that ViT performs the worst in classifying 8 * 8 pixel patches, but it outperforms most convolutional neural networks in classifying 224 * 224 pixel patches.

cs.CV↗
arXiv2021

Arithmetic version of anderson localization for quasiperiodic Schrödinger operators with even cosine type potentials

We propose a new method to prove Anderson localization for quasiperiodic Schrödinger operators and apply it to the quasiperiodic model considered by Sinai and Fröhlich-Spencer-Wittwer. More concretely, we prove Anderson localization for even $C^2$ cosine type quasiperiodic Schrödinger operators with large coupling constants, Diophantine frequencies and Diophantine phases.

math.SP↗
arXiv2021

Compass-free migratory navigation

How migratory birds can find the right way in navigating over thousand miles is an intriguing question, which much interested researchers in both fields of biology and physics for centuries. There several putative proposals that sound intuitively plausible all remain contested so far because those hypothesis-models of magnetoreceptor to sense geomagnetic field need either extremely high sensitivity or humankind-like intelligence to guide. Here we explore theoretically that the birds can navigate to their destination through an entirely new scenario to sense the geomagnetic field. Our proposal is based on separate peaks of the resonance-fluorescence spectrum of a four-level system derived from the ferric sulfide cluster which exists in a protein complex (Drosophila CG8198) of migratory birds. As the separation of spectral peaks contains information about geomagnetic field at both current location and birthland, the change of such separation cues the bird to choose a right direction to move and double-resonance emerges once arrived the destination. Our theoretical mechanism can explain previous experiments on the disorientation of migratory birds caused by oscillating magnetic field naturally and more precisely. This work provides insight to explain migratory navigation and motivates possible manmade practical devices.

physics.bio-ph↗
arXiv2021

Learning Category- and Instance-Aware Pixel Embedding for Fast Panoptic Segmentation

Panoptic segmentation (PS) is a complex scene understanding task that requires providing high-quality segmentation for both thing objects and stuff regions. Previous methods handle these two classes with semantic and instance segmentation modules separately, following with heuristic fusion or additional modules to resolve the conflicts between the two outputs. This work simplifies this pipeline of PS by consistently modeling the two classes with a novel PS framework, which extends a detection model with an extra module to predict category- and instance-aware pixel embedding (CIAE). CIAE is a novel pixel-wise embedding feature that encodes both semantic-classification and instance-distinction information. At the inference process, PS results are simply derived by assigning each pixel to a detected instance or a stuff class according to the learned embedding. Our method not only demonstrates fast inference speed but also the first one-stage method to achieve comparable performance to two-stage methods on the challenging COCO benchmark.

cs.CV↗
arXiv2021

Relational Subsets Knowledge Distillation for Long-tailed Retinal Diseases Recognition

In the real world, medical datasets often exhibit a long-tailed data distribution (i.e., a few classes occupy most of the data, while most classes have rarely few samples), which results in a challenging imbalance learning scenario. For example, there are estimated more than 40 different kinds of retinal diseases with variable morbidity, however with more than 30+ conditions are very rare from the global patient cohorts, which results in a typical long-tailed learning problem for deep learning-based screening models. In this study, we propose class subset learning by dividing the long-tailed data into multiple class subsets according to prior knowledge, such as regions and phenotype information. It enforces the model to focus on learning the subset-specific knowledge. More specifically, there are some relational classes that reside in the fixed retinal regions, or some common pathological features are observed in both the majority and minority conditions. With those subsets learnt teacher models, then we are able to distill the multiple teacher models into a unified model with weighted knowledge distillation loss. The proposed framework proved to be effective for the long-tailed retinal diseases recognition task. The experimental results on two different datasets demonstrate that our method is flexible and can be easily plugged into many other state-of-the-art techniques with significant improvements.

cs.CV↗
arXiv2021

Improving Medical Image Classification with Label Noise Using Dual-uncertainty Estimation

Deep neural networks are known to be data-driven and label noise can have a marked impact on model performance. Recent studies have shown great robustness to classic image recognition even under a high noisy rate. In medical applications, learning from datasets with label noise is more challenging since medical imaging datasets tend to have asymmetric (class-dependent) noise and suffer from high observer variability. In this paper, we systematically discuss and define the two common types of label noise in medical images - disagreement label noise from inconsistency expert opinions and single-target label noise from wrong diagnosis record. We then propose an uncertainty estimation-based framework to handle these two label noise amid the medical image classification task. We design a dual-uncertainty estimation approach to measure the disagreement label noise and single-target label noise via Direct Uncertainty Prediction and Monte-Carlo-Dropout. A boosting-based curriculum training procedure is later introduced for robust learning. We demonstrate the effectiveness of our method by conducting extensive experiments on three different diseases: skin lesions, prostate cancer, and retinal diseases. We also release a large re-engineered database that consists of annotations from more than ten ophthalmologists with an unbiased golden standard dataset for evaluation and benchmarking.

cs.CV↗
arXiv2021

A New Pairwise Deep Learning Feature For Environmental Microorganism Image Analysis

Environmental microorganism (EM) offers a high-efficient, harmless, and low-cost solution to environmental pollution. They are used in sanitation, monitoring, and decomposition of environmental pollutants. However, this depends on the proper identification of suitable microorganisms. In order to fasten, low the cost, increase consistency and accuracy of identification, we propose the novel pairwise deep learning features to analyze microorganisms. The pairwise deep learning features technique combines the capability of handcrafted and deep learning features. In this technique we, leverage the Shi and Tomasi interest points by extracting deep learning features from patches which are centered at interest points locations. Then, to increase the number of potential features that have intermediate spatial characteristics between nearby interest points, we use Delaunay triangulation theorem and straight-line geometric theorem to pair the nearby deep learning features. The potential of pairwise features is justified on the classification of EMs using SVMs, k-NN, and Random Forest classifier. The pairwise features obtain outstanding results of 99.17%, 91.34%, 91.32%, 91.48%, and 99.56%, which are the increase of about 5.95%, 62.40%, 62.37%, 61.84%, and 3.23% in accuracy, F1-score, recall, precision, and specificity respectively, compared to non-paired deep learning features.

cs.CV↗
arXiv2021

NumaPerf: Predictive and Full NUMA Profiling

Parallel applications are extremely challenging to achieve the optimal performance on the NUMA architecture, which necessitates the assistance of profiling tools. However, existing NUMA-profiling tools share some similar shortcomings, such as portability, effectiveness, and helpfulness issues. This paper proposes a novel profiling tool - NumaPerf - that overcomes these issues. NumaPerf aims to identify potential performance issues for any NUMA architecture, instead of only on the current hardware. To achieve this, NumaPerf focuses on memory sharing patterns between threads, instead of real remote accesses. NumaPerf further detects potential thread migrations and load imbalance issues that could significantly affect the performance but are omitted by existing profilers. NumaPerf also separates cache coherence issues that may require different fix strategies. Based on our extensive evaluation, NumaPerf is able to identify more performance issues than any existing tool, while fixing these bugs leads to up to 5.94x performance speedup.

cs.PF↗
arXiv2021

Leveraging Regular Fundus Images for Training UWF Fundus Diagnosis Models via Adversarial Learning and Pseudo-Labeling

Recently, ultra-widefield (UWF) 200\degree~fundus imaging by Optos cameras has gradually been introduced because of its broader insights for detecting more information on the fundus than regular 30 degree - 60 degree fundus cameras. Compared with UWF fundus images, regular fundus images contain a large amount of high-quality and well-annotated data. Due to the domain gap, models trained by regular fundus images to recognize UWF fundus images perform poorly. Hence, given that annotating medical data is labor intensive and time consuming, in this paper, we explore how to leverage regular fundus images to improve the limited UWF fundus data and annotations for more efficient training. We propose the use of a modified cycle generative adversarial network (CycleGAN) model to bridge the gap between regular and UWF fundus and generate additional UWF fundus images for training. A consistency regularization term is proposed in the loss of the GAN to improve and regulate the quality of the generated data. Our method does not require that images from the two domains be paired or even that the semantic labels be the same, which provides great convenience for data collection. Furthermore, we show that our method is robust to noise and errors introduced by the generated unlabeled data with the pseudo-labeling technique. We evaluated the effectiveness of our methods on several common fundus diseases and tasks, such as diabetic retinopathy (DR) classification, lesion detection and tessellated fundus segmentation. The experimental results demonstrate that our proposed method simultaneously achieves superior generalizability of the learned representations and performance improvements in multiple tasks.

cs.CV↗