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Xingtong Yu

Publications and source records attributed to Xingtong Yu.

At least 19 recordsLinked to original sources
arXiv2026

From Parameters to Answers: How LLMs Retrieve and Use Their Internal Knowledge

How does a language model's dependence on query-routing information and target knowledge change as it answers a question? We study this question through layerwise interventions on the hidden state at the end of the question. Across Qwen, Llama, and Gemma, we compare country-continent questions with noun, adjective, and code answers while keeping several fitted measurements distinct. A pair-conditioned request direction describes which country is queried in natural single-country questions; a global request direction describes first- versus second-country requests in paired questions; separate selection candidates test control among contents already available in the hidden state. A diagnostic reanalysis of frozen Qwen natural-question states shows that the pair-conditioned direction grows stronger before interventions on it begin to alter later fitted knowledge, with this causal window opening while answer-supporting content is still forming. The paired three-model trajectories are not uniform: Gemma shows a partially overlapping mid-layer routing-content profile, whereas Llama has no sustained routing-effect window under the same gates. In the paired protocol, dependence on the global request direction decreases from fixed earlier to later layer sets while dependence on fitted content persists. A matched Qwen comparison shows that the pair-conditioned direction retains a late effect, so this operational handoff concerns the global fitted direction rather than all request information. These results separate early readability, natural strength, causal steering, and later content dependence.

cs.AI↗
arXiv2026

TradingMoE: Routing the Right Experts in Evolving Markets

Large language models (LLMs) have shown strong potential for financial analysis and trading, but direct trading remains challenging because the predictive capabilities required can vary across assets, decision fields, and market conditions. Existing LLM-based trading systems either coordinate human-defined external experts or adopt conventional internal Mixture-of-Experts (MoE) routers that do not directly evaluate how individual experts contribute to trading decisions. Moreover, these routers receive no direct signal indicating when an inactive expert has become more suitable as market conditions change. We find that native router scores poorly reflect how much individual experts improve trading decisions, frequently leaving better alternatives unselected. We further reveal that token-specific expert usefulness exhibits a compact low-dimensional structure. Based on these findings, we propose TradingMoE, a trading-oriented sparse MoE that augments a frozen dense LLM with lightweight residual experts. We introduce a Query-Key router that represents the expertise required by each token under the current market context as a low-dimensional query and matches it with learnable expert keys. We further propose a sparse expert selection update mechanism that samples a few inactive experts during training and estimates whether they should replace the weakest expert in the current Top-k route. This mechanism enables the router to update expert selection as market conditions change while preserving sparse computation. Experiments against 22 baselines on stock and cryptocurrency markets show that TradingMoE improves cumulative return over the best-performing baselines by 30.89% and 30.7%, respectively. Rolling paper-trading experiments further demonstrate that its advantage persists under forward-only deployment.

cs.LG↗
arXiv2026

Dynamic Graph Prompting via Topology-Routed Mixed-Curvature Experts

Dynamic graph prompting freezes a pre-trained temporal backbone and adapts it to label-scarce downstream tasks using lightweight prompts. However, existing methods operate within a single, fixed embedding space. In this work, we reveal that temporal shifts in local clustering and degree heterogeneity actively reorganize the edge curvature spectrum---indicating that the optimal representation geometry dynamically evolves with local topology over time. We formalize this unaddressed mismatch as geometry under-adaptation. To overcome this limitation, we propose CurvPrompt, a topology-routed geometry prompting framework for dynamic graphs. Instead of relying on a single space, CurvPrompt maintains a bank of curvature-diverse Riemannian experts, each paired with a learnable prompt. A topology-aware gate dynamically routes each node--time instance to a sparse subset of experts, constructing a personalized mixed-curvature representation. To ensure parameter efficiency and training stability under extreme label scarcity, CurvPrompt employs soft routing during pre-training to build a continuous topology--geometry mapping, and transitions to hard Top-K routing with uniform weights during downstream adaptation. Extensive experiments across four benchmark datasets show that CurvPrompt significantly advances few-shot link prediction while delivering strong, consistent performance on node classification tasks, validating the necessity of geometry-adaptive prompting.

cs.LG↗
arXiv2026

HyperClaim: Fine-Grained Cross-Modal Hypergraph Reasoning for Video Misinformation Detection

Video misinformation detection is often approached through global multimodal fusion or free-form multimodal reasoning. Both paradigms can under-represent localized authenticity cues that arise from coupled interactions among query phrases, contextual text, and short temporal spans of frames. Because such interactions are inherently higher-order, pairwise graph formulations are insufficient to capture multi-way cross-modal dependencies, whereas hypergraphs offer a suitable representation for these relations. We propose HyperClaim, a discriminative temporal hypergraph framework for sample-level authenticity classification. Using the title or benchmark-provided paired text as a claim-like query, HyperClaim constructs a sparse heterogeneous hypergraph over query tokens, evidence tokens, and sampled frames; applies confidence-aware filtering and source budgeting to form compact text-frame and short-range temporal evidence units; performs adaptive soft-incidence reasoning with residual text-video calibration; and aggregates textual, visual, and hyperedge states through a discrepancy-aware readout. Without relying on generated rationales or external tool calls, HyperClaim preserves fine-grained cross-modal and temporal structure that global fusion tends to flatten. Under the FactGuard temporal protocol, it achieves 83.7%, 82.0%, and 87.3% accuracy on FakeSV, FakeTT, and FakeVV, respectively, outperforming strong discriminative and reasoning-centric baselines. Learned incidence and attention weights further reveal token- and frame-level structure.

cs.AI↗
arXiv2026

Clustering as Reasoning: A $k$-Means Interpretation of Chain-of-Thought Graph Learning

Chain-of-Thought (CoT) prompting has shown promise in enhancing the reasoning capabilities of large language models (LLMs) on text-attributed graphs (TAGs). This work reframes CoT-based graph learning through the principle of clustering as reasoning, offering a $k$-means interpretation of how iterative reasoning operates over graph-structured data. We observe that existing graph CoT methods rely on disjoint architectures and fixed graph representations, limiting step-by-step semantic-topological interaction and interpretability. To overcome this limitation, we propose a unified framework named KCoT that integrates CoT reasoning with graph representation learning. Our key theoretical result reveals a formal mathematical correspondence between a Transformer block and the $k$-means algorithm, allowing reasoning to be interpreted as iterative assignment and update steps. Based on this insight, we introduce a Semantic Discriminating Prompt that explicitly formulates these steps as structured CoT reasoning, together with a structure-grounded alignment strategy to fuse topological priors with evolving thought-conditioned representations. Experiments on standard benchmarks demonstrate consistent improvements over state-of-the-art methods, validating clustering as a principled mechanism for CoT-based graph learning.

cs.AI↗
arXiv2026

PrimeKG-CL: A Continual Graph Learning Benchmark on Evolving Biomedical Knowledge Graphs

Biomedical knowledge graphs underwrite drug repurposing and clinical decision support, yet the upstream ontologies they depend on update on independent cycles that add millions of edges and deprecate hundreds of thousands more between releases. Yet existing continual graph learning has been studied almost exclusively on synthetic random splits of static, generic KGs, a regime that cannot reproduce the asynchronous, structured evolution real biomedical KGs undergo. To this end, we introduce PrimeKG-CL, a CGL benchmark built from nine authoritative biomedical databases (129K+ nodes, 8.1M+ edges, 10 node types, 30 relation types) with two genuine temporal snapshots (June 2021, July 2023; 5.83M edges added, 889K removed, 7.21M persistent), 10 entity-type-grouped tasks, multimodal node features, and a per-task persistent/added/removed test stratification. On three tasks (biomedical relationship prediction, entity classification, KGQA), we evaluate six CL strategies across four KGE decoders, plus LKGE, an LLM-RAG agent, and CMKL. We find that decoder choice and continual learning strategy interact strongly: no single strategy performs best across all decoders, and mismatched combinations can significantly degrade performance. Moreover, only DistMult exhibits a clear separation between persistent and deprecated knowledge, indicating that standard metrics conflate retention of still-valid facts with failure to forget outdated ones; this effect is absent under RotatE. In addition, multimodal features improve entity-level tasks by up to 60%, and a recent CKGE framework (IncDE) failed to scale to our 5.67M-triple base task across five attempts up to 350GB RAM. Data, pipeline, baselines, and the stratified split are released openly. Dataset:huggingface.co/datasets/yradwan147/PrimeKGCL|Code:github.com/yradwan147/primekg-cl-neurips2026

cs.AI↗
arXiv2026

Learning Multi-Relational Graph Representations for DNA Methylation-Based Biological Age Estimation

Aging clocks aim to estimate biological age, a measure of physiological state distinct from chronological age, from observable biomarkers, and are widely used for health assessment and disease analysis. DNA methylation is a particularly informative biomarker due to its stability and strong association with aging, and recent learning-based approaches have improved predictive performance. However, most existing methods treat CpG sites as independent features, overlooking the complex and heterogeneous biological relationships among them. We propose RelAge-GNN, a multi-relational graph neural network framework for DNA methylation-based age prediction. Our method constructs three complementary graphs capturing co-methylation patterns, genomic co-localization, and gene-level associations among CpG sites. Each graph is modeled by an independent GNN branch, and a learnable gating mechanism adaptively fuses the resulting representations. Experiments on large-scale datasets show that RelAge-GNN achieves competitive accuracy and stronger correlation with chronological age compared to state-of-the-art methods. Moreover, the model exhibits improved sensitivity in detecting age acceleration across diverse disease cohorts, highlighting its potential utility for disease characterization. Finally, through post hoc interpretability analyses, we quantify the contributions of different relational structures and CpG sites, providing biologically meaningful insights and suggesting potential directions for aging-related research. Our code is available at: https://anonymous.4open.science/r/RelAge-GNN-F1E3/.

cs.LG↗
arXiv2026

GraphReAct: Reasoning and Acting for Multi-step Graph Inference

Reasoning-acting frameworks enhance large language models (LLMs) by interleaving reasoning with actions for dynamic information acquisition. However, extending this paradigm to graph learning remains underexplored. Graph data is inherently structured, with information distributed across nodes and edges and encoded through both topology and latent representations. As a result, effective reasoning over graphs requires not only retrieving informative evidence from the graph, but also progressively refining the accumulated context during multi-step inference. In this work, we propose GraphReAct, a graph reasoning-acting framework that enables step-by-step inference over graph-structured data. Specifically, we design a graph-based action space with two complementary retrieval actions: topological retrieval, which captures local structural dependencies, and semantic retrieval, which accesses non-local but relevant evidence in the representation space. These actions dynamically expand the reasoning context. To further support multi-step reasoning, we introduce another type of action, context refinement, which distills and reorganizes accumulated information into a compact representation. By interleaving reasoning with both retrieval and refinement actions, our framework enables a progressive transition from context expansion to compression. Extensive experiments on six benchmark datasets demonstrate that GraphReAct consistently outperforms state-of-the-art methods, validating the effectiveness of reasoning-acting for graph learning.

cs.AI↗
arXiv2026

CoEvoT: Co-Evolving Chain-of-Thought Prompting for Graph-LLM Reasoning

Graph learning under distribution shift presents a persistent challenge, where models adapt to new graphs with limited or even no supervision. Recent graph--LLM approaches move toward label-efficient prediction by linearizing graphs into prompts and using large language models (LLMs) as predictors, and can adopt Chain-of-Thought (CoT) prompting to exploit LLM's multi-step reasoning capability. However, existing CoT-based graph--LLM methods generate intermediate thoughts while conditioning on fixed graph tokens, limiting step-wise refinement of structural cues. In this paper, we propose CoEvoT, a simple yet effective co-evolving CoT prompting framework for graph--LLM reasoning. CoEvoT couples text-to-graph token rewriting and graph-to-text reasoning guidance in a closed loop: each intermediate textual thought is used to update the graph token evidence state via a lightweight condition network, and the updated tokens are fed back into the next-step instruction to guide subsequent LLM reasoning. This enables step-wise, state-aware evidence refinement, rather than reasoning over a fixed graph snapshot. Extensive experiments on eight datasets demonstrate that CoEvoT consistently outperforms state-of-the-art baselines.

cs.CL↗
arXiv2026

UniDetect: LLM-Driven Universal Fraud Detection across Heterogeneous Blockchains

As cross-chain interoperability advances, decentralized finance (DeFi) protocols enable illicit funds to be reorganized into uniform liquid assets that flow throughout the cryptocurrency market. Such operations can bypass monitoring targeted at individual blockchains and thereby weaken current regulatory frameworks. Motivated by these, we introduce UniDetect, a multi-chain cryptocurrency fraud account detection method based on large language models (LLMs). Specifically, we use domain knowledge to guide the LLM to generate general transaction summary texts applicable to heterogeneous blockchain accounts, which serve as evidence for fraud account detection. Furthermore, we introduce a two-stage alternating training strategy to continuously and dynamically enhance the multimodal joint reasoning for detecting fraudulent accounts based on both the textual evidence and the transaction graph patterns. Experiments on multiple blockchains show that UniDetect outperforms existing methods 5.57% to 7.58% in Kolmogorov-Smirnov (KS). For cross-chain zero-shot detection, UniDetect identifies over 94.58% of fraudulent accounts. It also generalizes well to non-blockchain data, delivering a 6.06% improvement in F1 over existing methods. The dataset and source code are available at https://github.com/msy0513/UniDetect.

cs.CR↗
arXiv2026

Evaluating Progress in Graph Foundation Models: A Comprehensive Benchmark and New Insights

Graph foundation models (GFM) aim to acquire transferable knowledge by pre-training on diverse graphs, which can be adapted to various downstream tasks. However, domain shift in graphs is inherently two-dimensional: graphs differ not only in what they describe (topic domains) but also in how they are represented (format domains). Most existing GFM benchmarks vary only topic domains, thereby obscuring how knowledge transfers across both dimensions. We present a new benchmark that jointly evaluates topic and format gaps across the full GFM pipeline, including multi-domain self-supervised pre-training and few-shot downstream adaptation, and provides a timely evaluation of recent GFMs in the rapidly evolving landscape. Our protocol enables controlled assessment in four settings: (i) pre-training on diverse topics and formats, while adapting to unseen downstream datasets; (ii) same pre-training as in (i), while adapting to seen datasets; (iii) pre-training on a single topic domain, while adapting to other topics; (iv) pre-training on a base format, while adapting to other formats. This two-axis evaluation disentangles semantic generalization from robustness to representational shifts. We conduct extensive evaluations of eight state-of-the-art GFMs on 33 datasets spanning seven topic domains and six format domains, surfacing new empirical observations and practical insights for future research. Codes/data are available at https://github.com/smufang/GFMBenchmark.

cs.CL↗
arXiv2026

UrbanGraphEmbeddings: Learning and Evaluating Spatially Grounded Multimodal Embeddings for Urban Science

Learning transferable multimodal embeddings for urban environments is challenging because urban understanding is inherently spatial, yet existing datasets and benchmarks lack explicit alignment between street-view images and urban structure. We introduce UGData, a spatially grounded dataset that anchors street-view images to structured spatial graphs and provides graph-aligned supervision via spatial reasoning paths and spatial context captions, exposing distance, directionality, connectivity, and neighborhood context beyond image content. Building on UGData, we propose UGE, a two-stage training strategy that progressively and stably aligns images, text, and spatial structures by combining instruction-guided contrastive learning with graph-based spatial encoding. We finally introduce UGBench, a comprehensive benchmark to evaluate how spatially grounded embeddings support diverse urban understanding tasks -- including geolocation ranking, image retrieval, urban perception, and spatial grounding. We develop UGE on multiple state-of-the-art VLM backbones, including Qwen2-VL, Qwen2.5-VL, Phi-3-Vision, and LLaVA1.6-Mistral, and train fixed-dimensional spatial embeddings with LoRA tuning. UGE built upon Qwen2.5-VL-7B backbone achieves up to 44% improvement in image retrieval and 30% in geolocation ranking on training cities, and over 30% and 22% gains respectively on held-out cities, demonstrating the effectiveness of explicit spatial grounding for spatially intensive urban tasks.

cs.CV↗
arXiv2025

Learnable Game-theoretic Policy Optimization for Data-centric Self-explanation Rationalization

Rationalization, a data-centric framework, aims to build self-explanatory models to explain the prediction outcome by generating a subset of human-intelligible pieces of the input data. It involves a cooperative game model where a generator generates the most human-intelligible parts of the input (i.e., rationales), followed by a predictor that makes predictions based on these generated rationales. Conventional rationalization methods typically impose constraints via regularization terms to calibrate or penalize undesired generation. However, these methods are suffering from a problem called mode collapse, in which the predictor produces correct predictions yet the generator consistently outputs rationales with collapsed patterns. Moreover, existing studies are typically designed separately for specific collapsed patterns, lacking a unified consideration. In this paper, we systematically revisit cooperative rationalization from a novel game-theoretic perspective and identify the fundamental cause of this problem: the generator no longer tends to explore new strategies to uncover informative rationales, ultimately leading the system to converge to a suboptimal game equilibrium (correct predictions v.s collapsed rationales). To solve this problem, we then propose a novel approach, Game-theoretic Policy Optimization oriented RATionalization (PORAT), which progressively introduces policy interventions to address the game equilibrium in the cooperative game process, thereby guiding the model toward a more optimal solution state. We theoretically analyse the cause of such a suboptimal equilibrium and prove the feasibility of the proposed method. Furthermore, we validate our method on nine widely used real-world datasets and two synthetic settings, where PORAT achieves up to 8.1% performance improvements over existing state-of-the-art methods.

cs.AI↗
arXiv2025

Event-Aware Prompt Learning for Dynamic Graphs

Real-world graph typically evolve via a series of events, modeling dynamic interactions between objects across various domains. For dynamic graph learning, dynamic graph neural networks (DGNNs) have emerged as popular solutions. Recently, prompt learning methods have been explored on dynamic graphs. However, existing methods generally focus on capturing the relationship between nodes and time, while overlooking the impact of historical events. In this paper, we propose EVP, an event-aware dynamic graph prompt learning framework that can serve as a plug-in to existing methods, enhancing their ability to leverage historical events knowledge. First, we extract a series of historical events for each node and introduce an event adaptation mechanism to align the fine-grained characteristics of these events with downstream tasks. Second, we propose an event aggregation mechanism to effectively integrate historical knowledge into node representations. Finally, we conduct extensive experiments on four public datasets to evaluate and analyze EVP.

cs.LG↗
arXiv2025

StaR-KVQA: Structured Reasoning Traces for Implicit-Knowledge Visual Question Answering

Knowledge-based Visual Question Answering (KVQA) requires models to ground entities in images and reason over factual knowledge. Recent work has introduced its implicit-knowledge variant, IK-KVQA, where a multimodal large language model (MLLM) is the sole knowledge source and answers are produced without external retrieval. Existing IK-KVQA approaches, however, are typically trained with answer-only supervision: reasoning remains implicit, justifications are often weak or inconsistent, and generalization after standard supervised fine-tuning (SFT) can be brittle. We propose StaR-KVQA, a framework that equips IK-KVQA with dual-path structured reasoning traces - symbolic relation paths over text and vision together with path-grounded natural-language explanations - to provide a stronger inductive bias than generic answer-only supervision. These traces act as modality-aware scaffolds that guide the model toward relevant entities and attributes, offering more structure than generic chain-of-thought supervision while not constraining reasoning to any single fixed path. With a single open-source MLLM, StaR-KVQA constructs and selects traces to build an offline trace-enriched dataset and then performs structure-aware self-distillation; no external retrievers, verifiers, or curated knowledge bases are used, and inference is a single autoregressive pass. Across benchmarks, StaR-KVQA consistently improves both answer accuracy and the transparency of intermediate reasoning, achieving up to +11.3% higher answer accuracy on OK-VQA over the strongest baseline.

cs.CV↗
arXiv2025

MolGA: Molecular Graph Adaptation with Pre-trained 2D Graph Encoder

Molecular graph representation learning is widely used in chemical and biomedical research. While pre-trained 2D graph encoders have demonstrated strong performance, they overlook the rich molecular domain knowledge associated with submolecular instances (atoms and bonds). While molecular pre-training approaches incorporate such knowledge into their pre-training objectives, they typically employ designs tailored to a specific type of knowledge, lacking the flexibility to integrate diverse knowledge present in molecules. Hence, reusing widely available and well-validated pre-trained 2D encoders, while incorporating molecular domain knowledge during downstream adaptation, offers a more practical alternative. In this work, we propose MolGA, which adapts pre-trained 2D graph encoders to downstream molecular applications by flexibly incorporating diverse molecular domain knowledge. First, we propose a molecular alignment strategy that bridge the gap between pre-trained topological representations with domain-knowledge representations. Second, we introduce a conditional adaptation mechanism that generates instance-specific tokens to enable fine-grained integration of molecular domain knowledge for downstream tasks. Finally, we conduct extensive experiments on eleven public datasets, demonstrating the effectiveness of MolGA.

cs.LG↗
arXiv2025

Taming Recommendation Bias with Causal Intervention on Evolving Personal Popularity

Popularity bias occurs when popular items are recommended far more frequently than they should be, negatively impacting both user experience and recommendation accuracy. Existing debiasing methods mitigate popularity bias often uniformly across all users and only partially consider the time evolution of users or items. However, users have different levels of preference for item popularity, and this preference is evolving over time. To address these issues, we propose a novel method called CausalEPP (Causal Intervention on Evolving Personal Popularity) for taming recommendation bias, which accounts for the evolving personal popularity of users. Specifically, we first introduce a metric called {Evolving Personal Popularity} to quantify each user's preference for popular items. Then, we design a causal graph that integrates evolving personal popularity into the conformity effect, and apply deconfounded training to mitigate the popularity bias of the causal graph. During inference, we consider the evolution consistency between users and items to achieve a better recommendation. Empirical studies demonstrate that CausalEPP outperforms baseline methods in reducing popularity bias while improving recommendation accuracy.

cs.IR↗
arXiv2025

GCoT: Chain-of-Thought Prompt Learning for Graphs

Chain-of-thought (CoT) prompting has achieved remarkable success in natural language processing (NLP). However, its vast potential remains largely unexplored for graphs. This raises an interesting question: How can we design CoT prompting for graphs to guide graph models to learn step by step? On one hand, unlike natural languages, graphs are non-linear and characterized by complex topological structures. On the other hand, many graphs lack textual data, making it difficult to formulate language-based CoT prompting. In this work, we propose the first CoT prompt learning framework for text-free graphs, GCoT. Specifically, we decompose the adaptation process for each downstream task into a series of inference steps, with each step consisting of prompt-based inference, ``thought'' generation, and thought-conditioned prompt learning. While the steps mimic CoT prompting in NLP, the exact mechanism differs significantly. Specifically, at each step, an input graph, along with a prompt, is first fed into a pre-trained graph encoder for prompt-based inference. We then aggregate the hidden layers of the encoder to construct a ``thought'', which captures the working state of each node in the current step. Conditioned on this thought, we learn a prompt specific to each node based on the current state. These prompts are fed into the next inference step, repeating the cycle. To evaluate and analyze the effectiveness of GCoT, we conduct comprehensive experiments on eight public datasets, which demonstrate the advantage of our approach.

cs.CL↗