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Xinran Ruan

Publications and source records attributed to Xinran Ruan.

18 recordsLinked to original sources

An Onsager Variational Scheme for Pressure-Driven Tumor Growth and Hele-Shaw Limits

Pressure-driven tumor growth models describe the coupling between cell proliferation and mechanical pressure and naturally lead to moving free boundary problems. Their numerical approximation is challenging due to degenerate diffusion, pressure-dependent proliferation, and the stiffness of the pressure law \(p=n^\gamma\) for large \(\gamma\). In this paper, we propose a structure-preserving finite difference method for this class of pressure-driven tumor growth models with pressure-dependent proliferation. The method is derived from the Onsager variational principle. The key idea is to introduce a modified energy shifted by the homeostatic pressure, so that the growth term can be written in a dissipative form and incorporated together with the transport part into a unified Rayleighian formulation. This formulation leads to a time-discrete constrained minimization problem and a fully discrete scheme with explicit mobilities and an implicit pressure update. We prove that the scheme preserves nonnegativity and the homeostatic upper bound, satisfies a discrete modified energy dissipation law, and admits a fixed-grid stiff-pressure limiting structure. Numerical experiments in one and two spatial dimensions demonstrate the accuracy of the method, its convergence toward the Hele--Shaw limit for large \(\gamma\), and its ability to capture free boundary evolutions with topology changes.

math.NA

A WKB-based fixed-grid method for capturing trait concentration in a dispersal evolution model

The evolution of dispersal traits is a fundamental topic in evolutionary ecology, where natural selection may drive the trait distribution toward concentration in the rare-mutation regime. This singular behavior poses a serious numerical difficulty, since direct discretizations of the population density require very fine trait grids to identify the fittest trait and to resolve the concentrated profile accurately. In this paper, we develop a WKB-based numerical framework for a dispersal evolution model. By separating the exponentially concentrated trait dependence from a smoother amplitude variable and combining this WKB representation with dual trait-grid implementation and other specially designed techniques, the method recovers the selected trait and the associated concentration structure accurately and efficiently on fixed trait grids. We establish a semi-discrete stationary fixed-grid asymptotic-preserving structure for the rare-mutation limit of the steady-state problem. Numerical experiments compare the proposed method with direct density discretizations and confirm its advantage in the small-mutation regime.

math.NA

A sharp-interface model for solid-state dewetting with wetting potential

We propose a sharp-interface model for solid-state dewetting of thin films with wetting potential, where the wetting effect is incorporated through a thickness-dependent surface energy. The model is governed by surface diffusion together with natural boundary conditions, and describes the morphological evolution of the film-vapor interface. For its numerical approximation, we develop an efficient semi-implicit finite element method based on a Taylor expansion of the wetting-potential term. Numerical simulations in two dimensions show that the proposed model and method can capture various dewetting phenomena. They also indicate that, as the range of the wetting potential tends to zero, the proposed model approaches the sharp-interface model with thickness-independent surface energy proposed in [1]. The model and numerical method are further extended to three dimensions, where the computations capture complex morphological evolution in solid-state dewetting.

math.NA

Ground states and droplet regimes of the extended Gross-Pitaevskii equation with Lee-Huang-Yang correction

We study the ground states of the extended Gross--Pitaevskii equation with the Lee--Huang--Yang correction from both theoretical and numerical perspectives. Starting from the three-dimensional model, we derive reduced one- and two-dimensional equations through nondimensionalization and dimensional reduction. We establish existence and nonexistence results for ground states in different spatial dimensions, both in free space and under confining external potentials. For the numerical computation of ground states, we propose a normalized gradient flow method with a Lagrange multiplier. The numerical results show how the model parameters affect the ground-state profiles, and reveal different regimes in the free-space parameter plane, including no-ground-state, soliton-like, and droplet-like regions. We also introduce a simple flat-top approximation for the droplet regime and present two- and three-dimensional computations to illustrate more general localized structures.

math-ph

Mathematical and numerical studies on ground states of trapped unitary Fermi gases

We mathematically and numerically study the ground states of unitary Fermi gases. Starting from the three-dimensional nonlinear Schr\"{o}dinger equation that contains a quantum pressure term and an angular momentum rotation term, we first nondimensionalize the equation and then obtain its one-dimensional and two-dimensional counterparts in some limit regimes of the external potentials. Existence and uniqueness of the ground states of the unitary Fermi gases are studied with/without the angular momentum rotation term. We present a regularized normalized gradient flow method to compute the ground states of trapped unitary Fermi gases. Our numerical results show that the quantum pressure term has a significant effect on the ground state properties. Specifically, with the presence of the quantum pressure term, the vortex lattices are very different from those obtained in conventional Bose-Einstein condensation.

math-ph

A phenotype-structured reaction-diffusion model of avascular glioma growth

We consider a phenotype-structured reaction-diffusion model of avascular glioma growth. The model describes the interaction dynamics between tumour cells and oxygen, and takes into account anisotropic cell movement and oxygen diffusion related to structural anisotropy of the brain's extracellular environment. In this model, phenotypic heterogeneity of tumour cells is captured by a continuous phenotype-structuring variable, the value of which evolves due to phenotypic changes. We first analyse a one-dimensional version of the model and formally show, through a Hopf-Cole transformation, that it admits, in appropriate asymptotic regimes, phenotypically heterogeneous travelling wave solutions, wherein the locally prevailing cell phenotype varies across the wave due to the presence of oxygen gradients. This provides a mathematical formalisation for the emergence of intratumour phenotypic heterogeneity driven by differences in oxygen availability across the tumour. We then report on the results of both 1D simulations, which corroborate the results of formal asymptotic analyses, and 2D simulations, which also demonstrate the impact of anisotropy in cell movement and oxygen diffusion on tumour growth and on the phenotypic composition of the tumour edge. These results are complemented with additional results of 3D simulations, which are carried out on the geometry of the brain by using a hybrid finite difference-finite element method and integrating patient-specific magnetic resonance imaging data with diffusion tensor imaging data.

q-bio.PE

Asymptotic preserving schemes for nonlinear kinetic equations leading to volume-exclusion chemotaxis in the diffusive limit

In this work we first prove, by formal arguments, that the diffusion limit of nonlinear kinetic equations, where both the transport term and the turning operator are density-dependent, leads to volume-exclusion chemotactic equations. We generalise an asymptotic preserving scheme for such nonlinear kinetic equations based on a micro-macro decomposition. By properly discretizing the nonlinear term implicitly-explicitly in an upwind manner, the scheme produces accurate approximations also in the case of strong chemosensitivity. We show, via detailed calculations, that the scheme presents the following properties: asymptotic preserving, positivity preserving and energy dissipation, which are essential for practical applications. We extend this scheme to two dimensional kinetic models and we validate its efficiency by means of 1D and 2D numerical experiments of pattern formation in biological systems.

math.AP

Individual-based and continuum models of phenotypically heterogeneous growing cell populations

Existing studies comparing individual-based models of growing cell populations and their continuum counterparts have mainly focused on homogeneous populations, in which all cells have the same phenotypic characteristics. However, significant intercellular phenotypic variability is commonly observed in cellular systems. Therefore, we develop here an individual-based model for the growth of phenotypically heterogeneous cell populations. In this model, the phenotypic state of each cell is described by a structuring variable that captures intercellular variability in cell proliferation and migration rates. The model tracks the spatial evolutionary dynamics of single cells, which undergo pressure-dependent proliferation, heritable phenotypic changes and directional movement in response to pressure differentials. We formally show that the continuum limit of this model comprises a non-local partial differential equation for the cell population density, which generalises earlier models of growing cell populations. Results of the individual-based model illustrate how proliferation-migration tradeoffs shaping the evolution of single cells can lead to the formation of travelling waves at the population level where highly-mobile cells locally dominate at the invasive front, while more-proliferative cells are found at the rear. We demonstrate that there is an excellent quantitative agreement between these results and the results of numerical simulations and formal travelling-wave analysis of the continuum model, when sufficiently large cell numbers are considered. We provide numerical evidence of scenarios in which the predictions of the two models may differ due to demographic stochasticity, which cannot be captured by the continuum model. This indicates the importance of integrating individual-based and continuum approaches when modelling the growth of phenotypically heterogeneous cell populations.

q-bio.PE

An asymptotic preserving scheme for a tumor growth model of porous medium type

Mechanical models of tumor growth based on a porous medium approach have been attracting a lot of interest both analytically and numerically. In this paper, we study the stability properties of a finite difference scheme for a model where the density evolves down pressure gradients and the growth rate depends on the pressure and possibly nutrients. Based on the stability results, we prove the scheme to be asymptotic preserving (AP) in the incompressible limit. Numerical simulations are performed in order to investigate the regularity of the pressure. We study the sharpness of the $L^4$-uniform bound of the gradient, the limiting case being a solution whose support contains a bubble which closes-up in finite time generating a singularity, the so-called focusing solution.

math.NA

Invasion fronts and adaptive dynamics in a model for the growth of cell populations with heterogeneous mobility

We consider a model for the dynamics of growing cell populations with heterogeneous mobility and proliferation rate. The cell phenotypic state is described by a continuous structuring variable and the evolution of the local cell population density function (i.e. the cell phenotypic distribution at each spatial position) is governed by a non-local advection-reaction-diffusion equation. We report on the results of numerical simulations showing that, in the case where the cell mobility is bounded, compactly supported travelling fronts emerge. More mobile phenotypic variants occupy the front edge, whereas more proliferative phenotypic variants are selected at the back of the front. In order to explain such numerical results, we carry out formal asymptotic analysis of the model equation using a Hamilton-Jacobi approach. In summary, we show that the locally dominant phenotypic trait (i.e. the maximum point of the local cell population density function along the phenotypic dimension) satisfies a generalised Burgers' equation with source term, we construct travelling-front solutions of such transport equation and characterise the corresponding minimal speed. Moreover, we show that, when the cell mobility is unbounded, front edge acceleration and formation of stretching fronts may occur. We briefly discuss the implications of our results in the context of glioma growth.

math.AP

Computing ground states of Bose-Einstein Condensates with higher order interaction via a regularized density function formulation

We propose and analyze a new numerical method for computing the ground state of the modified Gross-Pitaevskii equation for modeling the Bose-Einstein condensate with a higher order interaction by adapting the density function formulation and the accelerated projected gradient method. By reformulating the energy functional $E(ϕ)$ with $ϕ$, the wave function, in terms of the density $ρ=|ϕ|^2$, the original non-convex minimization problem for defining the ground state is then reformulated to a convex minimization problem. In order to overcome the semi-smoothness of the function $\sqrtρ$ in the kinetic energy part, a regularization is introduced with a small parameter $0<\varepsilon\ll1$. Convergence of the regularization is established when $\varepsilon\to0$. The regularized convex optimization problem is discretized by the second order finite difference method. The convergence rates in terms of the density and energy of the discretization are established. The accelerated projected gradient method is adapted for solving the discretized optimization problem. Numerical results are reported to demonstrate the efficiency and accuracy of the proposed numerical method. Our results show that the proposed method is much more efficient than the existing methods in the literature, especially in the strong interaction regime.

cond-mat.quant-gas

Ground states of Bose-Einstein condensates with higher order interaction

We analyze the ground state of a Bose-Einstein condensate in the presence of higher-order interaction (HOI), modeled by a modified Gross-Pitaevskii equation (MGPE). In fact, due to the appearance of HOI, the ground state structures become very rich and complicated. We establish the existence and non-existence results under different parameter regimes, and obtain their limiting behaviors and/or structures with different combinations of HOI and contact interactions. Both the whole space case and the bounded domain case are considered, where different structures of ground states are identified.

math-ph

A normalized gradient flow method with attractive-repulsive splitting for computing ground states of Bose-Einstein condensates with higher-order interaction

In this paper, we generalize the normalized gradient flow method to compute the ground states of Bose-Einstein condensates (BEC) with higher order interactions (HOI), which is modelled via the modified Gross-Pitaevskii equation (MGPE). Schemes constructed in naive ways suffer from severe stability problems due to the high restrictions on time steps. To build an efficient and stable scheme, we split the HOI term into two parts with each part treated separately. The part corresponding to a repulsive/positive energy is treated semi-implicitly while the one corresponding to an attractive/negative energy is treated fully explicitly. Based on the splitting, we construct the BEFD-splitting and BESP-splitting schemes. A variety of numerical experiments shows that the splitting will improve the stability of the schemes significantly. Besides, we will show that the methods can be applied to multidimensional problems and to the computation of the first excited state as well.

physics.comp-ph

Fundamental Gaps of the Fractional Schrödinger Operator

We study asymptotically and numerically the fundamental gap -- the difference between the first two smallest (and distinct) eigenvalues -- of the fractional Schrödinger operator (FSO) and formulate a gap conjecture on the fundamental gap of the FSO. We begin with an introduction of the FSO on bounded domains with homogeneous Dirichlet boundary conditions, while the fractional Laplacian operator defined either via the local fractional Laplacian (i.e. via the eigenfunctions decomposition of the Laplacian operator) or via the classical fractional Laplacian (i.e. zero extension of the eigenfunctions outside the bounded domains and then via the Fourier transform). For the FSO on bounded domains with either the local fractional Laplacian or the classical fractional Laplacian, we obtain the fundamental gap of the FSO analytically on simple geometry without potential and numerically on complicated geometries and/or with different convex potentials. Based on the asymptotic and extensive numerical results, a gap conjecture on the fundamental gap of the FSO is formulated. Surprisingly, for two and higher dimensions, the lower bound of the fundamental gap depends not only on the diameter of the domain, but also the diameter of the largest inscribed ball of the domain, which is completely different from the case of the Schrödinger operator. Extensions of these results for the FSO in the whole space and on bounded domains with periodic boundary conditions are presented.

math.AP

Effects of the non-parabolic kinetic energy on non-equilibrium polariton condensates

In the study of non-equilibrium polariton condensates it is usually assumed that the dispersion relation of polaritons is parabolic in nature. We show that considering the true non-parabolic kinetic energy of polaritons leads to significant changes in the behaviour of the condensate due to the curvature of the dispersion relation and the possibility of transfer of energy to high wavenumber components in the condensate spatial profile. We present explicit solutions for plane waves and linear excitations, and identify the differences in the theoretical predictions between the parabolic and non-parabolic mean-field models, showing the possibility of symmetry breaking in the latter. We then consider the evolution of wavepackets and show that self-localisation effects may be observed due to the curvature of the dispersion relation. Finally, we revisit the dynamics of dark soliton trains and show that additional localized density excitations may emerge in the dynamics due to the excitation of high frequency components, mimicking the appearance of near-bright solitary waves over short timescales.

cond-mat.quant-gas

Ground states and energy asymptotics of the nonlinear Schrödinger equation

We study analytically the existence and uniqueness of the ground state of the nonlinear Schrödinger equation (NLSE) with a general power nonlinearity described by the power index $σ\ge0$. For the NLSE under a box or a harmonic potential, we can derive explicitly the approximations of the ground states and their corresponding energy and chemical potential in weak or strong interaction regimes with a fixed nonlinearity $σ$. Besides, we study the case where the nonlinearity $σ\to\infty$ with a fixed interaction strength. In particular, a bifurcation in the ground states is observed. Numerical results in 1D and 2D will be reported to support our asymptotic results.

math.AP

Fundamental gaps of the Gross-Pitaevskii equation with repulsive interaction

We study asymptotically and numerically the fundamental gaps (i.e. the difference between the first excited state and the ground state) in energy and chemical potential of the Gross-Pitaevskii equation (GPE) -- nonlinear Schrodinger equation with cubic nonlinearity -- with repulsive interaction under different trapping potentials including box potential and harmonic potential. Based on our asymptotic and numerical results, we formulate a gap conjecture on the fundamental gaps in energy and chemical potential of the GPE on bounded domains with the homogeneous Dirichlet boundary condition, and in the whole space with a convex trapping potential growing at least quadratically in the far field. We then extend these results to the GPE on bounded domains with either the homogeneous Neumann boundary condition or periodic boundary condition.

math-ph

Mean-field regime and Thomas-Fermi approximations of trapped Bose-Einstein condensates with higher order interactions in one and two dimensions

We derive rigorously one- and two-dimensional mean-field equations for cigar- and pancake-shaped Bose-Einstein condensates (BEC) with higher order interactions (HOI). We show how the higher order interaction modifies the contact interaction of the strongly confined particles. Surprisingly, we find that the usual Gaussian profile assumption for the strongly confining direction is inappropriate for the cigar-shaped BEC case, and a Thomas-Fermi type profile should be adopted instead. Based on the derived mean field equations, the Thomas-Fermi densities are analyzed in presence of the contact interaction and HOI. For both box and harmonic traps in one, two and three dimensions, we identify the analytical Thomas-Fermi densities, which depend on the competition between the contact interaction and the HOI.

cond-mat.quant-gas