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Xinyan Zhao

Publications and source records attributed to Xinyan Zhao.

At least 19 recordsLinked to original sources

REVES: REvision and VErification--Augmented Training for Test-Time Scaling

Test-time scaling via sequential revision has emerged as a powerful paradigm for enhancing Large Language Model (LLM) reasoning. However, standard post-training methods primarily optimize single-shot objectives, creating a fundamental misalignment with multi-step inference dynamics. While recent work treats this as multi-turn reinforcement learning (RL), conventional approaches optimize over the multi-step trajectories directly, failing to further exploit the high-quality mistakes in intermediate steps that model can learn from correcting them. We propose a two-stage iterative framework that alternates between online data/prompt augmentation and policy optimization. By converting the intermediate steps (``near-miss'' answers) in the successful recovery trajectories into decoupled revision and verification prompts, our approach concentrates training on both effective answer transformation and error identification. This approach enables efficient off-policy data generation and reduces the computational overhead of long-horizon sampling compared to standard multi-turn RL. On LiveCodeBench, using publicly available test cases as feedback, we observe gains of +6.5 points over the RL baseline and +4.0 points over standard multi-turn training. Beyond coding, our approach matches the previously reported SOTA result on circle packing while using the smallest base model (4B) and far fewer rollouts than the much larger evolutionary search systems. Math results under ground-truth verification further confirm improved correction ability. It also generalizes to out-of-distribution constraint-satisfaction puzzles such as n\_queens and mini\_sudoku, where correctness is defined entirely by problem constraints. Code is available at https://github.com/yxliu02/REVES.git.

cs.LG

WhisperNet: A Scalable Solution for Bandwidth-Efficient Collaboration

Collaborative perception is vital for autonomous driving yet remains constrained by tight communication budgets. Earlier work reduced bandwidth by compressing full feature maps with fixed-rate encoders, which adapts poorly to a changing environment, and it further evolved into spatial selection methods that improve efficiency by focusing on salient regions, but this object-centric approach often sacrifices global context, weakening holistic scene understanding. To overcome these limitations, we introduce \textit{WhisperNet}, a bandwidth-aware framework that proposes a novel, receiver-centric paradigm for global coordination across agents. Senders generate lightweight saliency metadata, while the receiver formulates a global request plan that dynamically budgets feature contributions across agents and features, retrieving only the most informative features. A collaborative feature routing module then aligns related messages before fusion to ensure structural consistency. Extensive experiments show that WhisperNet achieves state-of-the-art performance, improving AP@0.7 on OPV2V by 2.4\% with only 0.5\% of the communication cost. As a plug-and-play component, it boosts strong baselines with merely 5\% of full bandwidth while maintaining robustness under localization noise. These results demonstrate that globally-coordinated allocation across \textit{what} and \textit{where} to share is the key to achieving efficient collaborative perception.

cs.CV

A Chromatographic Process Design and Optimization Platform Powered by Large Language Models: A Case Application on Extract of Ginkgo Biloba Leaf

Chromatographic separation technology has been widely applied in pharmaceutical, chemical, and food industries due to its high efficiency. However, traditional human-dependent chromatographic process development faces challenges such as reliance on expert experience, long development cycles, and labor intensity. ChromR, a large language model (LLM)-driven platform for chromatographic process design and optimization, is presented in this work. The platform integrates ChromLLM, a domain-specific LLM trained for chromatography, along with a multi-agent system and an automated chromatographic experimental device. The multi-agent system comprises four agents: domain knowledge answering, experimental design, experimental execution, and data analysis. ChromR enables automatic completion of the entire workflow-including initial process parameter recommendation, experimental design, automated execution, data analysis, and multi-objective optimization. By utilizing ChromR, dependency on expert knowledge is effectively reduced, while labor input and development time are significantly decreased. Chromatographic purification of the extract of Ginkgo biloba leaf (EGBL) was selected as a case study. ChromR successfully developed a chromatographic process within one week that meets multiple objectives, including fraction quality and production efficiency, reducing development time to approximately one-seventh of that required by the conventional paradigm. An intelligent, automated, and universally applicable new paradigm was established for chromatographic process development.

cs.MA

Structure-Aware Antibody Design with Affinity-Optimized Inverse Folding

Motivation: The clinical efficacy of antibody therapeutics critically depends on high-affinity target engagement, yet laboratory affinity-maturation campaigns are slow and costly. In computational settings, most protein language models (PLMs) are not trained to favor high-affinity antibodies, and existing preference optimization approaches introduce substantial computational overhead without clear affinity gains. Therefore, this work proposes SimBinder-IF, which converts the inverse folding model ESM-IF into an antibody sequence generator by freezing its structure encoder and training only its decoder to prefer experimentally stronger binders through preference optimization. Results: On the 11-assay AbBiBench benchmark, SimBinder-IF achieves a 55 percent relative improvement in mean Spearman correlation between log-likelihood scores and experimentally measured binding affinity compared to vanilla ESM-IF (from 0.264 to 0.410). In zero-shot generalization across four unseen antigen-antibody complexes, the correlation improves by 156 percent (from 0.115 to 0.294). SimBinder-IF also outperforms baselines in top-10 precision for ten-fold or greater affinity improvements. A case study redesigning antibody F045-092 for A/California/04/2009 (pdmH1N1) shows that SimBinder-IF proposes variants with substantially lower predicted binding free energy changes than ESM-IF (mean Delta Delta G -75.16 vs -46.57). Notably, SimBinder-IF trains only about 18 percent of the parameters of the full ESM-IF model, highlighting its parameter efficiency for high-affinity antibody generation.

cs.CE

SafeSieve: From Heuristics to Experience in Progressive Pruning for LLM-based Multi-Agent Communication

LLM-based multi-agent systems exhibit strong collaborative capabilities but often suffer from redundant communication and excessive token overhead. Existing methods typically enhance efficiency through pretrained GNNs or greedy algorithms, but often isolate pre- and post-task optimization, lacking a unified strategy. To this end, we present SafeSieve, a progressive and adaptive multi-agent pruning algorithm that dynamically refines the inter-agent communication through a novel dual-mechanism. SafeSieve integrates initial LLM-based semantic evaluation with accumulated performance feedback, enabling a smooth transition from heuristic initialization to experience-driven refinement. Unlike existing greedy Top-k pruning methods, SafeSieve employs 0-extension clustering to preserve structurally coherent agent groups while eliminating ineffective links. Experiments across benchmarks (SVAMP, HumanEval, etc.) showcase that SafeSieve achieves 94.01% average accuracy while reducing token usage by 12.4%-27.8%. Results further demonstrate robustness under prompt injection attacks (1.23% average accuracy drop). In heterogeneous settings, SafeSieve reduces deployment costs by 13.3% while maintaining performance. These results establish SafeSieve as an efficient, GPU-free, and scalable framework for practical multi-agent systems. Our code can be found here: https://github.com/csgen/SafeSieve

cs.MA

Towards Safety Reasoning in LLMs: AI-agentic Deliberation for Policy-embedded CoT Data Creation

Safety reasoning is a recent paradigm where LLMs reason over safety policies before generating responses, thereby mitigating limitations in existing safety measures such as over-refusal and jailbreak vulnerabilities. However, implementing this paradigm is challenging due to the resource-intensive process of creating high-quality policy-embedded chain-of-thought (CoT) datasets while ensuring reasoning remains accurate and free from hallucinations or policy conflicts. To tackle this, we propose AIDSAFE: Agentic Iterative Deliberation for Safety Reasoning, a novel data generation recipe that leverages multi-agent deliberation to iteratively expand reasoning on safety policies. A data refiner stage in AIDSAFE ensures high-quality outputs by eliminating repetitive, redundant, and deceptive thoughts. AIDSAFE-generated CoTs provide a strong foundation for supervised fine-tuning (SFT)-based safety training. Additionally, to address the need of preference data in alignment stages, such as DPO training, we introduce a supplemental recipe that uses belief augmentation to create distinct selected and rejected CoT samples. Our evaluations demonstrate that AIDSAFE-generated CoTs achieve superior policy adherence and reasoning quality. Consequently, we show that fine-tuning open-source LLMs on these CoTs can significantly improve safety generalization and jailbreak robustness while maintaining acceptable utility and over-refusal accuracy. AIDSAFE-generated CoT datasets can be found here: https://huggingface.co/datasets/AmazonScience/AIDSAFE

cs.AI

AbBiBench: A Benchmark for Antibody Binding Affinity Maturation and Design

We introduce AbBiBench (Antibody Binding Benchmarking), a benchmarking framework for antibody binding affinity maturation and design. Unlike previous strategies that evaluate antibodies in isolation, typically by comparing them to natural sequences with metrics such as amino acid recovery rate or structural RMSD, AbBiBench instead treats the antibody-antigen (Ab-Ag) complex as the fundamental unit. It evaluates an antibody design's binding potential by measuring how well a protein model scores the full Ab-Ag complex. We first curate, standardize, and share more than 184,500 experimental measurements of antibody mutants across 14 antibodies and 9 antigens-including influenza, lysozyme, HER2, VEGF, integrin, Ang2, and SARS-CoV-2-covering both heavy-chain and light-chain mutations. Using these datasets, we systematically compare 15 protein models including masked language models, autoregressive language models, inverse folding models, diffusion-based generative models, and geometric graph models by comparing the correlation between model likelihood and experimental affinity values. Additionally, to demonstrate AbBiBench's generative utility, we apply it to antibody F045-092 in order to introduce binding to influenza H1N1. We sample new antibody variants with the top-performing models, rank them by the structural integrity and biophysical properties of the Ab-Ag complex, and assess them with in vitro ELISA binding assays. Our findings show that structure-conditioned inverse folding models outperform others in both affinity correlation and generation tasks. Overall, AbBiBench provides a unified, biologically grounded evaluation framework to facilitate the development of more effective, function-aware antibody design models.

q-bio.QM

SCALE: Towards Collaborative Content Analysis in Social Science with Large Language Model Agents and Human Intervention

Content analysis breaks down complex and unstructured texts into theory-informed numerical categories. Particularly, in social science, this process usually relies on multiple rounds of manual annotation, domain expert discussion, and rule-based refinement. In this paper, we introduce SCALE, a novel multi-agent framework that effectively $\underline{\textbf{S}}$imulates $\underline{\textbf{C}}$ontent $\underline{\textbf{A}}$nalysis via $\underline{\textbf{L}}$arge language model (LLM) ag$\underline{\textbf{E}}$nts. SCALE imitates key phases of content analysis, including text coding, collaborative discussion, and dynamic codebook evolution, capturing the reflective depth and adaptive discussions of human researchers. Furthermore, by integrating diverse modes of human intervention, SCALE is augmented with expert input to further enhance its performance. Extensive evaluations on real-world datasets demonstrate that SCALE achieves human-approximated performance across various complex content analysis tasks, offering an innovative potential for future social science research.

cs.AI

FANTAstic SEquences and Where to Find Them: Faithful and Efficient API Call Generation through State-tracked Constrained Decoding and Reranking

API call generation is the cornerstone of large language models' tool-using ability that provides access to the larger world. However, existing supervised and in-context learning approaches suffer from high training costs, poor data efficiency, and generated API calls that can be unfaithful to the API documentation and the user's request. To address these limitations, we propose an output-side optimization approach called FANTASE. Two of the unique contributions of FANTASE are its State-Tracked Constrained Decoding (SCD) and Reranking components. SCD dynamically incorporates appropriate API constraints in the form of Token Search Trie for efficient and guaranteed generation faithfulness with respect to the API documentation. The Reranking component efficiently brings in the supervised signal by leveraging a lightweight model as the discriminator to rerank the beam-searched candidate generations of the large language model. We demonstrate the superior performance of FANTASE in API call generation accuracy, inference efficiency, and context efficiency with DSTC8 and API Bank datasets.

cs.CL

TikTok Engagement Traces Over Time and Health Risky Behaviors: Combining Data Linkage and Computational Methods

Digital technologies and social algorithms are revolutionizing the media landscape, altering how we select and consume health information. Extending the selectivity paradigm with research on social media engagement, the convergence perspective, and algorithmic impact, this study investigates how individuals' liked TikTok videos on various health-risk topics are associated with their vaping and drinking behaviors. Methodologically, we relied on data linkage to objectively measure selective engagement on social media, which involves combining survey self-reports with digital traces from TikTok interactions for the consented respondents (n = 166). A computational analysis of 13,724 health-related videos liked by these respondents from 2020 to 2023 was conducted. Our findings indicate that users who initially liked drinking-related content on TikTok are inclined to favor more of such videos over time, with their likes on smoking, drinking, and fruit and vegetable videos influencing their self-reported vaping and drinking behaviors. Our study highlights the methodological value of combining digital traces, computational analysis, and self-reported data for a more objective examination of social media consumption and engagement, as well as a more ecologically valid understanding of social media's behavioral impact.

cs.CY

Tailoring Generative AI Chatbots for Multiethnic Communities in Disaster Preparedness Communication: Extending the CASA Paradigm

This study is among the first to develop different prototypes of generative artificial intelligence (GenAI) chatbots powered by GPT-4 to communicate hurricane preparedness information to diverse residents. Drawing from the Computers Are Social Actors paradigm and the literature on disaster vulnerability and cultural tailoring, we conducted a between-subjects experiment with 441 Black, Hispanic, and Caucasian residents of Florida. Our results suggest that GenAI chatbots varying in tone formality and cultural tailoring significantly influence perceptions of their friendliness and credibility, which, in turn, relate to hurricane preparedness outcomes. These results highlight the potential of using GenAI chatbots to improve diverse communities' disaster preparedness.

cs.CL

Multi-User MultiWOZ: Task-Oriented Dialogues among Multiple Users

While most task-oriented dialogues assume conversations between the agent and one user at a time, dialogue systems are increasingly expected to communicate with multiple users simultaneously who make decisions collaboratively. To facilitate development of such systems, we release the Multi-User MultiWOZ dataset: task-oriented dialogues among two users and one agent. To collect this dataset, each user utterance from MultiWOZ 2.2 was replaced with a small chat between two users that is semantically and pragmatically consistent with the original user utterance, thus resulting in the same dialogue state and system response. These dialogues reflect interesting dynamics of collaborative decision-making in task-oriented scenarios, e.g., social chatter and deliberation. Supported by this data, we propose the novel task of multi-user contextual query rewriting: to rewrite a task-oriented chat between two users as a concise task-oriented query that retains only task-relevant information and that is directly consumable by the dialogue system. We demonstrate that in multi-user dialogues, using predicted rewrites substantially improves dialogue state tracking without modifying existing dialogue systems that are trained for single-user dialogues. Further, this method surpasses training a medium-sized model directly on multi-user dialogues and generalizes to unseen domains.

cs.CL

PharmMT: A Neural Machine Translation Approach to Simplify Prescription Directions

The language used by physicians and health professionals in prescription directions includes medical jargon and implicit directives and causes much confusion among patients. Human intervention to simplify the language at the pharmacies may introduce additional errors that can lead to potentially severe health outcomes. We propose a novel machine translation-based approach, PharmMT, to automatically and reliably simplify prescription directions into patient-friendly language, thereby significantly reducing pharmacist workload. We evaluate the proposed approach over a dataset consisting of over 530K prescriptions obtained from a large mail-order pharmacy. The end-to-end system achieves a BLEU score of 60.27 against the reference directions generated by pharmacists, a 39.6% relative improvement over the rule-based normalization. Pharmacists judged 94.3% of the simplified directions as usable as-is or with minimal changes. This work demonstrates the feasibility of a machine translation-based tool for simplifying prescription directions in real-life.

cs.CL

UniDS: A Unified Dialogue System for Chit-Chat and Task-oriented Dialogues

With the advances in deep learning, tremendous progress has been made with chit-chat dialogue systems and task-oriented dialogue systems. However, these two systems are often tackled separately in current methods. To achieve more natural interaction with humans, a dialogue agent needs to be capable of both chatting and accomplishing tasks. To this end, we propose a unified dialogue system (UniDS) with the two aforementioned skills. In particular, we design a unified dialogue data schema, compatible for both chit-chat and task-oriented dialogues, and we train UniDS with mixed dialogue data from a pretrained chit-chat dialogue model. Without adding extra parameters to SOTA baselines, UniDS can alternatively handle chit-chat and task-oriented dialogues in a unified framework. Experimental results demonstrate that the proposed UniDS works comparably well as the pure chit-chat system, and it outperforms state-of-the-art task-oriented dialogue systems. More importantly, UniDS achieves better robustness as it is able to smoothly switch between two types of dialogues. These results demonstrate the feasibility and potential of building an one-for-all dialogue system.

cs.CL

GLaRA: Graph-based Labeling Rule Augmentation for Weakly Supervised Named Entity Recognition

Instead of using expensive manual annotations, researchers have proposed to train named entity recognition (NER) systems using heuristic labeling rules. However, devising labeling rules is challenging because it often requires a considerable amount of manual effort and domain expertise. To alleviate this problem, we propose \textsc{GLaRA}, a graph-based labeling rule augmentation framework, to learn new labeling rules from unlabeled data. We first create a graph with nodes representing candidate rules extracted from unlabeled data. Then, we design a new graph neural network to augment labeling rules by exploring the semantic relations between rules. We finally apply the augmented rules on unlabeled data to generate weak labels and train a NER model using the weakly labeled data. We evaluate our method on three NER datasets and find that we can achieve an average improvement of +20\% F1 score over the best baseline when given a small set of seed rules.

cs.CL

Toward Effective Automated Content Analysis via Crowdsourcing

Many computer scientists use the aggregated answers of online workers to represent ground truth. Prior work has shown that aggregation methods such as majority voting are effective for measuring relatively objective features. For subjective features such as semantic connotation, online workers, known for optimizing their hourly earnings, tend to deteriorate in the quality of their responses as they work longer. In this paper, we aim to address this issue by proposing a quality-aware semantic data annotation system. We observe that with timely feedback on workers' performance quantified by quality scores, better informed online workers can maintain the quality of their labeling throughout an extended period of time. We validate the effectiveness of the proposed annotation system through i) evaluating performance based on an expert-labeled dataset, and ii) demonstrating machine learning tasks that can lead to consistent learning behavior with 70%-80% accuracy. Our results suggest that with our system, researchers can collect high-quality answers of subjective semantic features at a large scale.

cs.CL

A Weighted Heterogeneous Graph Based Dialogue System

Knowledge based dialogue systems have attracted increasing research interest in diverse applications. However, for disease diagnosis, the widely used knowledge graph is hard to represent the symptom-symptom relations and symptom-disease relations since the edges of traditional knowledge graph are unweighted. Most research on disease diagnosis dialogue systems highly rely on data-driven methods and statistical features, lacking profound comprehension of symptom-disease relations and symptom-symptom relations. To tackle this issue, this work presents a weighted heterogeneous graph based dialogue system for disease diagnosis. Specifically, we build a weighted heterogeneous graph based on symptom co-occurrence and a proposed symptom frequency-inverse disease frequency. Then this work proposes a graph based deep Q-network (Graph-DQN) for dialogue management. By combining Graph Convolutional Network (GCN) with DQN to learn the embeddings of diseases and symptoms from both the structural and attribute information in the weighted heterogeneous graph, Graph-DQN could capture the symptom-disease relations and symptom-symptom relations better. Experimental results show that the proposed dialogue system rivals the state-of-the-art models. More importantly, the proposed dialogue system can complete the task with less dialogue turns and possess a better distinguishing capability on diseases with similar symptoms.

cs.CL

LIREx: Augmenting Language Inference with Relevant Explanation

Natural language explanations (NLEs) are a special form of data annotation in which annotators identify rationales (most significant text tokens) when assigning labels to data instances, and write out explanations for the labels in natural language based on the rationales. NLEs have been shown to capture human reasoning better, but not as beneficial for natural language inference (NLI). In this paper, we analyze two primary flaws in the way NLEs are currently used to train explanation generators for language inference tasks. We find that the explanation generators do not take into account the variability inherent in human explanation of labels, and that the current explanation generation models generate spurious explanations. To overcome these limitations, we propose a novel framework, LIREx, that incorporates both a rationale-enabled explanation generator and an instance selector to select only relevant, plausible NLEs to augment NLI models. When evaluated on the standardized SNLI data set, LIREx achieved an accuracy of 91.87%, an improvement of 0.32 over the baseline and matching the best-reported performance on the data set. It also achieves significantly better performance than previous studies when transferred to the out-of-domain MultiNLI data set. Qualitative analysis shows that LIREx generates flexible, faithful, and relevant NLEs that allow the model to be more robust to spurious explanations. The code is available at https://github.com/zhaoxy92/LIREx.

cs.CL