arXiv subjects

Xinyu Yang

Publications and source records attributed to Xinyu Yang.

At least 127 records · Page 7Linked to original sources

arXiv2023

Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides

Definitive cancer diagnosis and management depend upon the extraction of information from microscopy images by pathologists. These images contain complex information requiring time-consuming expert human interpretation that is prone to human bias. Supervised deep learning approaches have proven powerful for classification tasks, but they are inherently limited by the cost and quality of annotations used for training these models. To address this limitation of supervised methods, we developed Histomorphological Phenotype Learning (HPL), a fully blue{self-}supervised methodology that requires no expert labels or annotations and operates via the automatic discovery of discriminatory image features in small image tiles. Tiles are grouped into morphologically similar clusters which constitute a library of histomorphological phenotypes, revealing trajectories from benign to malignant tissue via inflammatory and reactive phenotypes. These clusters have distinct features which can be identified using orthogonal methods, linking histologic, molecular and clinical phenotypes. Applied to lung cancer tissues, we show that they align closely with patient survival, with histopathologically recognised tumor types and growth patterns, and with transcriptomic measures of immunophenotype. We then demonstrate that these properties are maintained in a multi-cancer study. These results show the clusters represent recurrent host responses and modes of tumor growth emerging under natural selection. Code, pre-trained models, learned embeddings, and documentation are available to the community at https://github.com/AdalbertoCq/Histomorphological-Phenotype-Learning

cs.CV↗

arXiv2023

Improving the Transferability of Adversarial Examples via Direction Tuning

In the transfer-based adversarial attacks, adversarial examples are only generated by the surrogate models and achieve effective perturbation in the victim models. Although considerable efforts have been developed on improving the transferability of adversarial examples generated by transfer-based adversarial attacks, our investigation found that, the big deviation between the actual and steepest update directions of the current transfer-based adversarial attacks is caused by the large update step length, resulting in the generated adversarial examples can not converge well. However, directly reducing the update step length will lead to serious update oscillation so that the generated adversarial examples also can not achieve great transferability to the victim models. To address these issues, a novel transfer-based attack, namely direction tuning attack, is proposed to not only decrease the update deviation in the large step length, but also mitigate the update oscillation in the small sampling step length, thereby making the generated adversarial examples converge well to achieve great transferability on victim models. In addition, a network pruning method is proposed to smooth the decision boundary, thereby further decreasing the update oscillation and enhancing the transferability of the generated adversarial examples. The experiment results on ImageNet demonstrate that the average attack success rate (ASR) of the adversarial examples generated by our method can be improved from 87.9\% to 94.5\% on five victim models without defenses, and from 69.1\% to 76.2\% on eight advanced defense methods, in comparison with that of latest gradient-based attacks.

cs.CV↗

arXiv2023

Towards Causal Representation Learning and Deconfounding from Indefinite Data

Owing to the cross-pollination between causal discovery and deep learning, non-statistical data (e.g., images, text, etc.) encounters significant conflicts in terms of properties and methods with traditional causal data. To unify these data types of varying forms, we redefine causal data from two novel perspectives and then propose three data paradigms. Among them, the indefinite data (like dialogues or video sources) induce low sample utilization and incapability of the distribution assumption, both leading to the fact that learning causal representation from indefinite data is, as of yet, largely unexplored. We design the causal strength variational model to settle down these two problems. Specifically, we leverage the causal strength instead of independent noise as the latent variable to construct evidence lower bound. By this design ethos, The causal strengths of different structures are regarded as a distribution and can be expressed as a 2D matrix. Moreover, considering the latent confounders, we disentangle the causal graph G into two relation subgraphs O and C. O contains pure relations between observed variables, while C represents the relations from latent variables to observed variables. We implement the above designs as a dynamic variational inference model, tailored to learn causal representation from indefinite data under latent confounding. Finally, we conduct comprehensive experiments on synthetic and real-world data to demonstrate the effectiveness of our method.

cs.LG↗

arXiv2023

Emotion-Conditioned Melody Harmonization with Hierarchical Variational Autoencoder

Existing melody harmonization models have made great progress in improving the quality of generated harmonies, but most of them ignored the emotions beneath the music. Meanwhile, the variability of harmonies generated by previous methods is insufficient. To solve these problems, we propose a novel LSTM-based Hierarchical Variational Auto-Encoder (LHVAE) to investigate the influence of emotional conditions on melody harmonization, while improving the quality of generated harmonies and capturing the abundant variability of chord progressions. Specifically, LHVAE incorporates latent variables and emotional conditions at different levels (piece- and bar-level) to model the global and local music properties. Additionally, we introduce an attention-based melody context vector at each step to better learn the correspondence between melodies and harmonies. Objective experimental results show that our proposed model outperforms other LSTM-based models. Through subjective evaluation, we conclude that only altering the types of chords hardly changes the overall emotion of the music. The qualitative analysis demonstrates the ability of our model to generate variable harmonies.

cs.SD↗

arXiv2023

FlatFormer: Flattened Window Attention for Efficient Point Cloud Transformer

Transformer, as an alternative to CNN, has been proven effective in many modalities (e.g., texts and images). For 3D point cloud transformers, existing efforts focus primarily on pushing their accuracy to the state-of-the-art level. However, their latency lags behind sparse convolution-based models (3x slower), hindering their usage in resource-constrained, latency-sensitive applications (such as autonomous driving). This inefficiency comes from point clouds' sparse and irregular nature, whereas transformers are designed for dense, regular workloads. This paper presents FlatFormer to close this latency gap by trading spatial proximity for better computational regularity. We first flatten the point cloud with window-based sorting and partition points into groups of equal sizes rather than windows of equal shapes. This effectively avoids expensive structuring and padding overheads. We then apply self-attention within groups to extract local features, alternate sorting axis to gather features from different directions, and shift windows to exchange features across groups. FlatFormer delivers state-of-the-art accuracy on Waymo Open Dataset with 4.6x speedup over (transformer-based) SST and 1.4x speedup over (sparse convolutional) CenterPoint. This is the first point cloud transformer that achieves real-time performance on edge GPUs and is faster than sparse convolutional methods while achieving on-par or even superior accuracy on large-scale benchmarks.

cs.CV↗

arXiv2023

Video-SwinUNet: Spatio-temporal Deep Learning Framework for VFSS Instance Segmentation

This paper presents a deep learning framework for medical video segmentation. Convolution neural network (CNN) and transformer-based methods have achieved great milestones in medical image segmentation tasks due to their incredible semantic feature encoding and global information comprehension abilities. However, most existing approaches ignore a salient aspect of medical video data - the temporal dimension. Our proposed framework explicitly extracts features from neighbouring frames across the temporal dimension and incorporates them with a temporal feature blender, which then tokenises the high-level spatio-temporal feature to form a strong global feature encoded via a Swin Transformer. The final segmentation results are produced via a UNet-like encoder-decoder architecture. Our model outperforms other approaches by a significant margin and improves the segmentation benchmarks on the VFSS2022 dataset, achieving a dice coefficient of 0.8986 and 0.8186 for the two datasets tested. Our studies also show the efficacy of the temporal feature blending scheme and cross-dataset transferability of learned capabilities. Code and models are fully available at https://github.com/SimonZeng7108/Video-SwinUNet.

cs.CV↗

arXiv2023

Accuracy on the Curve: On the Nonlinear Correlation of ML Performance Between Data Subpopulations

Understanding the performance of machine learning (ML) models across diverse data distributions is critically important for reliable applications. Despite recent empirical studies positing a near-perfect linear correlation between in-distribution (ID) and out-of-distribution (OOD) accuracies, we empirically demonstrate that this correlation is more nuanced under subpopulation shifts. Through rigorous experimentation and analysis across a variety of datasets, models, and training epochs, we demonstrate that OOD performance often has a nonlinear correlation with ID performance in subpopulation shifts. Our findings, which contrast previous studies that have posited a linear correlation in model performance during distribution shifts, reveal a "moon shape" correlation (parabolic uptrend curve) between the test performance on the majority subpopulation and the minority subpopulation. This non-trivial nonlinear correlation holds across model architectures, hyperparameters, training durations, and the imbalance between subpopulations. Furthermore, we found that the nonlinearity of this "moon shape" is causally influenced by the degree of spurious correlations in the training data. Our controlled experiments show that stronger spurious correlation in the training data creates more nonlinear performance correlation. We provide complementary experimental and theoretical analyses for this phenomenon, and discuss its implications for ML reliability and fairness. Our work highlights the importance of understanding the nonlinear effects of model improvement on performance in different subpopulations, and has the potential to inform the development of more equitable and responsible machine learning models.

cs.LG↗

arXiv2023

Gradient Aligned Attacks via a Few Queries

Black-box query attacks, which rely only on the output of the victim model, have proven to be effective in attacking deep learning models. However, existing black-box query attacks show low performance in a novel scenario where only a few queries are allowed. To address this issue, we propose gradient aligned attacks (GAA), which use the gradient aligned losses (GAL) we designed on the surrogate model to estimate the accurate gradient to improve the attack performance on the victim model. Specifically, we propose a gradient aligned mechanism to ensure that the derivatives of the loss function with respect to the logit vector have the same weight coefficients between the surrogate and victim models. Using this mechanism, we transform the cross-entropy (CE) loss and margin loss into gradient aligned forms, i.e. the gradient aligned CE or margin losses. These losses not only improve the attack performance of our gradient aligned attacks in the novel scenario but also increase the query efficiency of existing black-box query attacks. Through theoretical and empirical analysis on the ImageNet database, we demonstrate that our gradient aligned mechanism is effective, and that our gradient aligned attacks can improve the attack performance in the novel scenario by 16.1\% and 31.3\% on the $l_2$ and $l_{\infty}$ norms of the box constraint, respectively, compared to four latest transferable prior-based query attacks. Additionally, the gradient aligned losses also significantly reduce the number of queries required in these transferable prior-based query attacks by a maximum factor of 2.9 times. Overall, our proposed gradient aligned attacks and losses show significant improvements in the attack performance and query efficiency of black-box query attacks, particularly in scenarios where only a few queries are allowed.

cs.CV↗

arXiv2023

Electrical tuning of robust layered antiferromagnetism in MXene monolayer

A-type antiferromagnetism, with an in-plane ferromagnetic order and the interlayer antiferromagnetic coupling, owns inborn advantages for electrical manipulations but is naturally rare in real materials except in those artificial antiferromagnetic heterostructures. Here, a robust layered antiferromagnetism with a high Néel temperature is predicted in a MXene Cr$_2$CCl$_2$ monolayer, which provides an ideal platform as a magnetoelectric field effect transistor. Based on first-principles calculations, we demonstrate that an electric field can induce the band splitting between spin-up and spin-down channels. Although no net magnetization is generated, the inversion symmetry between the lower Cr layer and the upper Cr layer is broken via electronic cloud distortions. Moreover, this electric field can be replaced by a proximate ferroelectric layer for nonvolatility. The magneto-optic Kerr effect can be used to detect this magnetoelectricity, even if it is a collinear antiferromagnet with zero magnetization.

cond-mat.mtrl-sci↗

arXiv2023

FACM: Intermediate Layer Still Retain Effective Features against Adversarial Examples

In strong adversarial attacks against deep neural networks (DNN), the generated adversarial example will mislead the DNN-implemented classifier by destroying the output features of the last layer. To enhance the robustness of the classifier, in our paper, a \textbf{F}eature \textbf{A}nalysis and \textbf{C}onditional \textbf{M}atching prediction distribution (FACM) model is proposed to utilize the features of intermediate layers to correct the classification. Specifically, we first prove that the intermediate layers of the classifier can still retain effective features for the original category, which is defined as the correction property in our paper. According to this, we propose the FACM model consisting of \textbf{F}eature \textbf{A}nalysis (FA) correction module, \textbf{C}onditional \textbf{M}atching \textbf{P}rediction \textbf{D}istribution (CMPD) correction module and decision module. The FA correction module is the fully connected layers constructed with the output of the intermediate layers as the input to correct the classification of the classifier. The CMPD correction module is a conditional auto-encoder, which can not only use the output of intermediate layers as the condition to accelerate convergence but also mitigate the negative effect of adversarial example training with the Kullback-Leibler loss to match prediction distribution. Through the empirically verified diversity property, the correction modules can be implemented synergistically to reduce the adversarial subspace. Hence, the decision module is proposed to integrate the correction modules to enhance the DNN classifier's robustness. Specially, our model can be achieved by fine-tuning and can be combined with other model-specific defenses.

cs.CV↗

arXiv2023

Fuzziness-tuned: Improving the Transferability of Adversarial Examples

With the development of adversarial attacks, adversairal examples have been widely used to enhance the robustness of the training models on deep neural networks. Although considerable efforts of adversarial attacks on improving the transferability of adversarial examples have been developed, the attack success rate of the transfer-based attacks on the surrogate model is much higher than that on victim model under the low attack strength (e.g., the attack strength $ε=8/255$). In this paper, we first systematically investigated this issue and found that the enormous difference of attack success rates between the surrogate model and victim model is caused by the existence of a special area (known as fuzzy domain in our paper), in which the adversarial examples in the area are classified wrongly by the surrogate model while correctly by the victim model. Then, to eliminate such enormous difference of attack success rates for improving the transferability of generated adversarial examples, a fuzziness-tuned method consisting of confidence scaling mechanism and temperature scaling mechanism is proposed to ensure the generated adversarial examples can effectively skip out of the fuzzy domain. The confidence scaling mechanism and the temperature scaling mechanism can collaboratively tune the fuzziness of the generated adversarial examples through adjusting the gradient descent weight of fuzziness and stabilizing the update direction, respectively. Specifically, the proposed fuzziness-tuned method can be effectively integrated with existing adversarial attacks to further improve the transferability of adverarial examples without changing the time complexity. Extensive experiments demonstrated that fuzziness-tuned method can effectively enhance the transferability of adversarial examples in the latest transfer-based attacks.

cs.LG↗

arXiv2023

A Multi-Stage Triple-Path Method for Speech Separation in Noisy and Reverberant Environments

In noisy and reverberant environments, the performance of deep learning-based speech separation methods drops dramatically because previous methods are not designed and optimized for such situations. To address this issue, we propose a multi-stage end-to-end learning method that decouples the difficult speech separation problem in noisy and reverberant environments into three sub-problems: speech denoising, separation, and de-reverberation. The probability and speed of searching for the optimal solution of the speech separation model are improved by reducing the solution space. Moreover, since the channel information of the audio sequence in the time domain is crucial for speech separation, we propose a triple-path structure capable of modeling the channel dimension of audio sequences. Experimental results show that the proposed multi-stage triple-path method can improve the performance of speech separation models at the cost of little model parameter increment.

cs.SD↗

arXiv2023

Multi-Dimensional and Multi-Scale Modeling for Speech Separation Optimized by Discriminative Learning

Transformer has shown advanced performance in speech separation, benefiting from its ability to capture global features. However, capturing local features and channel information of audio sequences in speech separation is equally important. In this paper, we present a novel approach named Intra-SE-Conformer and Inter-Transformer (ISCIT) for speech separation. Specifically, we design a new network SE-Conformer that can model audio sequences in multiple dimensions and scales, and apply it to the dual-path speech separation framework. Furthermore, we propose Multi-Block Feature Aggregation to improve the separation effect by selectively utilizing information from the intermediate blocks of the separation network. Meanwhile, we propose a speaker similarity discriminative loss to optimize the speech separation model to address the problem of poor performance when speakers have similar voices. Experimental results on the benchmark datasets WSJ0-2mix and WHAM! show that ISCIT can achieve state-of-the-art results.

cs.SD↗

arXiv2023

Dynamic Curriculum Learning for Great Ape Detection in the Wild

We propose a novel end-to-end curriculum learning approach for sparsely labelled animal datasets leveraging large volumes of unlabelled data to improve supervised species detectors. We exemplify the method in detail on the task of finding great apes in camera trap footage taken in challenging real-world jungle environments. In contrast to previous semi-supervised methods, our approach adjusts learning parameters dynamically over time and gradually improves detection quality by steering training towards virtuous self-reinforcement. To achieve this, we propose integrating pseudo-labelling with curriculum learning policies and show how learning collapse can be avoided. We discuss theoretical arguments, ablations, and significant performance improvements against various state-of-the-art systems when evaluating on the Extended PanAfrican Dataset holding approx. 1.8M frames. We also demonstrate our method can outperform supervised baselines with significant margins on sparse label versions of other animal datasets such as Bees and Snapshot Serengeti. We note that performance advantages are strongest for smaller labelled ratios common in ecological applications. Finally, we show that our approach achieves competitive benchmarks for generic object detection in MS-COCO and PASCAL-VOC indicating wider applicability of the dynamic learning concepts introduced. We publish all relevant source code, network weights, and data access details for full reproducibility. The code is available at https://github.com/youshyee/DCL-Detection.

cs.CV↗

arXiv2022

Aircraft Ground Taxiing Deduction and Conflict Early Warning Method Based on Control Command Information

Aircraft taxiing conflict is a threat to the safety of airport operations, mainly due to the human error in control command infor-mation. In order to solve the problem, The aircraft taxiing deduction and conflict early warning method based on control order information is proposed. This method does not need additional equipment and operating costs, and is completely based on his-torical data and control command information. When the aircraft taxiing command is given, the future route information will be deduced, and the probability of conflict with other taxiing aircraft will be calculated to achieve conflict detection and early warning of different levels. The method is validated by the aircraft taxi data from real airports. The results show that the method can effectively predict the aircraft taxiing process, and can provide early warning of possible conflicts. Due to the advantages of low cost and high accuracy, this method has the potential to be applied to airport operation decision support system.

eess.SY↗

arXiv2022

A Review and Roadmap of Deep Learning Causal Discovery in Different Variable Paradigms

Understanding causality helps to structure interventions to achieve specific goals and enables predictions under interventions. With the growing importance of learning causal relationships, causal discovery tasks have transitioned from using traditional methods to infer potential causal structures from observational data to the field of pattern recognition involved in deep learning. The rapid accumulation of massive data promotes the emergence of causal search methods with brilliant scalability. Existing summaries of causal discovery methods mainly focus on traditional methods based on constraints, scores and FCMs, there is a lack of perfect sorting and elaboration for deep learning-based methods, also lacking some considers and exploration of causal discovery methods from the perspective of variable paradigms. Therefore, we divide the possible causal discovery tasks into three types according to the variable paradigm and give the definitions of the three tasks respectively, define and instantiate the relevant datasets for each task and the final causal model constructed at the same time, then reviews the main existing causal discovery methods for different tasks. Finally, we propose some roadmaps from different perspectives for the current research gaps in the field of causal discovery and point out future research directions.

cs.LG↗

arXiv2022

Learning a General Clause-to-Clause Relationships for Enhancing Emotion-Cause Pair Extraction

Emotion-cause pair extraction (ECPE) is an emerging task aiming to extract potential pairs of emotions and corresponding causes from documents. Previous approaches have focused on modeling the pair-to-pair relationship and achieved promising results. However, the clause-to-clause relationship, which fundamentally symbolizes the underlying structure of a document, has still been in its research infancy. In this paper, we define a novel clause-to-clause relationship. To learn it applicably, we propose a general clause-level encoding model named EA-GAT comprising E-GAT and Activation Sort. E-GAT is designed to aggregate information from different types of clauses; Activation Sort leverages the individual emotion/cause prediction and the sort-based mapping to propel the clause to a more favorable representation. Since EA-GAT is a clause-level encoding model, it can be broadly integrated with any previous approach. Experimental results show that our approach has a significant advantage over all current approaches on the Chinese and English benchmark corpus, with an average of $2.1\%$ and $1.03\%$.

cs.CL↗

arXiv2022

Video-TransUNet: Temporally Blended Vision Transformer for CT VFSS Instance Segmentation

We propose Video-TransUNet, a deep architecture for instance segmentation in medical CT videos constructed by integrating temporal feature blending into the TransUNet deep learning framework. In particular, our approach amalgamates strong frame representation via a ResNet CNN backbone, multi-frame feature blending via a Temporal Context Module (TCM), non-local attention via a Vision Transformer, and reconstructive capabilities for multiple targets via a UNet-based convolutional-deconvolutional architecture with multiple heads. We show that this new network design can significantly outperform other state-of-the-art systems when tested on the segmentation of bolus and pharynx/larynx in Videofluoroscopic Swallowing Study (VFSS) CT sequences. On our VFSS2022 dataset it achieves a dice coefficient of 0.8796 and an average surface distance of 1.0379 pixels. Note that tracking the pharyngeal bolus accurately is a particularly important application in clinical practice since it constitutes the primary method for diagnostics of swallowing impairment. Our findings suggest that the proposed model can indeed enhance the TransUNet architecture via exploiting temporal information and improving segmentation performance by a significant margin. We publish key source code, network weights, and ground truth annotations for simplified performance reproduction.

eess.IV↗