arXiv subjects

Xue-Jun Kong

Publications and source records attributed to Xue-Jun Kong.

2 recordsLinked to original sources

arXiv2026

Towards a general-purpose foundation model for fMRI analysis

Functional MRI (fMRI) is crucial for studying brain function and diagnosing neurological disorders. However, existing analysis methods suffer from reproducibility and transferability challenges due to complex preprocessing pipelines and task-specific model designs. In this work, we introduce NeuroSTORM (Neuroimaging Foundation Model with Spatial-Temporal Optimized Representation Modeling) that learns generalizable representations directly from 4D fMRI volumes and enables efficient transfer to diverse downstream applications. Specifically, NeuroSTORM is pre-trained on 28.65 million fMRI frames from over 50,000 subjects, spanning multiple centers and ages 5 to 100. It combines an efficient spatiotemporal modeling design and lightweight task adaptation to enable scalable pre-training and fast transfer to downstream applications. Here we show that NeuroSTORM consistently outperforms existing methods across five downstream tasks, including demographic prediction, phenotype prediction, disease diagnosis, re-identification, and state classification. On two multi-hospital clinical cohorts with 17 diagnoses, NeuroSTORM achieves the best diagnosis performance while remaining predictive of psychological and cognitive phenotypes. These results suggest that NeuroSTORM could become a standardized foundation model for reproducible and transferable fMRI analysis.

cs.CV↗

arXiv2025

A Machine Learning-Based Framework to Shorten the Questionnaire for Assessing Autism Intervention

Caregivers of individuals with autism spectrum disorder (ASD) often find the 77-item Autism Treatment Evaluation Checklist (ATEC) burdensome, limiting its use for routine monitoring. This study introduces a generalizable machine learning framework that seeks to shorten assessments while maintaining evaluative accuracy. Using longitudinal ATEC data from 60 autistic children receiving therapy, we applied feature selection and cross-validation techniques to identify the most predictive items across two assessment goals: longitudinal therapy tracking and point-in-time severity estimation. For progress monitoring, the framework identified 16 items (21% of the original questionnaire) that retained strong correlation with total score change and full subdomain coverage. We also generated smaller subsets (1-7 items) for efficient approximations. For point-in-time severity assessment, our model achieved over 80% classification accuracy using just 13 items (17% of the original set). While demonstrated on ATEC, the methodology-based on subset optimization, model interpretability, and statistical rigor-is broadly applicable to other high-dimensional psychometric tools. The resulting framework could potentially enable more accessible, frequent, and scalable assessments and offer a data-driven approach for AI-supported interventions across neurodevelopmental and psychiatric contexts.

stat.AP↗