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Xuefei He

Publications and source records attributed to Xuefei He.

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Do Text-to-Vis Benchmarks Test Real Use of Visualisations?

Large language models are able to generate code for visualisations in response to simple user requests. This is a useful application and an appealing one for NLP research because plots of data provide grounding for language. However, there are relatively few benchmarks, and those that exist may not be representative of what users do in practice. This paper investigates whether benchmarks reflect real-world use through an empirical study comparing benchmark datasets with code from public repositories. Our findings reveal a substantial gap, with evaluations not testing the same distribution of chart types, attributes, and actions as real-world examples. One dataset is representative, but requires extensive modification to become a practical end-to-end benchmark. This shows that new benchmarks are needed to support the development of systems that truly address users' visualisation needs. These observations will guide future data creation, highlighting which features hold genuine significance for users.

cs.CL

Automated Fourier space region-recognition filtering for off-axis digital holographic microscopy

Automated label-free quantitative imaging of biological samples can greatly benefit high throughput diseases diagnosis. Digital holographic microscopy (DHM) is a powerful quantitative label-free imaging tool that retrieves structural details of cellular samples non-invasively. In off-axis DHM, a proper spatial filtering window in Fourier space is crucial to the quality of reconstructed phase image. Here we describe a region-recognition approach that combines shape recognition with an iterative thresholding to extracts the optimal shape of frequency components. The region recognition technique offers fully automated adaptive filtering that can operate with a variety of samples and imaging conditions. When imaging through optically scattering biological hydrogel matrix, the technique surpasses previous histogram thresholding techniques without requiring any manual intervention. Finally, we automate the extraction of the statistical difference of optical height between malaria parasite infected and uninfected red blood cells. The method described here pave way to greater autonomy in automated DHM imaging for imaging live cell in thick cell cultures.

physics.optics