arXiv subjects

Xuemin Lin

Publications and source records attributed to Xuemin Lin.

At least 109 records · Page 6Linked to original sources

arXiv2020

GoGNN: Graph of Graphs Neural Network for Predicting Structured Entity Interactions

Entity interaction prediction is essential in many important applications such as chemistry, biology, material science, and medical science. The problem becomes quite challenging when each entity is represented by a complex structure, namely structured entity, because two types of graphs are involved: local graphs for structured entities and a global graph to capture the interactions between structured entities. We observe that existing works on structured entity interaction prediction cannot properly exploit the unique graph of graphs model. In this paper, we propose a Graph of Graphs Neural Network, namely GoGNN, which extracts the features in both structured entity graphs and the entity interaction graph in a hierarchical way. We also propose the dual-attention mechanism that enables the model to preserve the neighbor importance in both levels of graphs. Extensive experiments on real-world datasets show that GoGNN outperforms the state-of-the-art methods on two representative structured entity interaction prediction tasks: chemical-chemical interaction prediction and drug-drug interaction prediction. Our code is available at Github.

cs.LG↗

arXiv2020

Binarized Graph Neural Network

Recently, there have been some breakthroughs in graph analysis by applying the graph neural networks (GNNs) following a neighborhood aggregation scheme, which demonstrate outstanding performance in many tasks. However, we observe that the parameters of the network and the embedding of nodes are represented in real-valued matrices in existing GNN-based graph embedding approaches which may limit the efficiency and scalability of these models. It is well-known that binary vector is usually much more space and time efficient than the real-valued vector. This motivates us to develop a binarized graph neural network to learn the binary representations of the nodes with binary network parameters following the GNN-based paradigm. Our proposed method can be seamlessly integrated into the existing GNN-based embedding approaches to binarize the model parameters and learn the compact embedding. Extensive experiments indicate that the proposed binarized graph neural network, namely BGN, is orders of magnitude more efficient in terms of both time and space while matching the state-of-the-art performance.

cs.LG↗

arXiv2020

Collective Entity Alignment via Adaptive Features

Entity alignment (EA) identifies entities that refer to the same real-world object but locate in different knowledge graphs (KGs), and has been harnessed for KG construction and integration. When generating EA results, current solutions treat entities independently and fail to take into account the interdependence between entities. To fill this gap, we propose a collective EA framework. We first employ three representative features, i.e., structural, semantic and string signals, which are adapted to capture different aspects of the similarity between entities in heterogeneous KGs. In order to make collective EA decisions, we formulate EA as the classical stable matching problem, which is further effectively solved by deferred acceptance algorithm. Our proposal is evaluated on both cross-lingual and mono-lingual EA benchmarks against state-of-the-art solutions, and the empirical results verify its effectiveness and superiority.

cs.AI↗

arXiv2020

CoinMagic: A Differential Privacy Framework for Ring Signature Schemes

By allowing users to obscure their transactions via including "mixins" (chaff coins), ring signature schemes have been widely used to protect a sender's identity of a transaction in privacy-preserving blockchain systems, like Monero and Bytecoin. However, recent works point out that the existing ring signature scheme is vulnerable to the "chain-reaction" analysis (i.e., the spent coin in a given ring signature can be deduced through elimination). Especially, when the diversity of mixins is low, the spent coin will have a high risk to be detected. To overcome the weakness, the ring signature should be consisted of a set of mixins with high diversity and produce observations having "similar" distributions for any two coins. In this paper, we propose a notion, namely $ε$-coin-indistinguishability ($ε$-CI), to formally define the "similar" distribution guaranteed through a differential privacy scheme. Then, we formally define the CI-aware mixins selection problem with disjoint-superset constraint (CIA-MS-DS), which aims to find a mixin set that has maximal diversity and satisfies the constraints of $ε$-CI and the budget. In CIA-MS-DS, each ring signature is either disjoint with or the superset of its preceding ring signatures. We prove that CIA-MS-DS is NP-hard and thus intractable. To solve the CIA-MS-DS problem, we propose two approximation algorithms, namely the Progressive Algorithm and the Game Theoretic Algorithm, with theoretic guarantees. Through extensive experiments on both real data sets and synthetic data sets, we demonstrate the efficiency and the effectiveness of our approaches.

cs.CR↗

arXiv2020

Graph3S: A Simple, Speedy and Scalable Distributed Graph Processing System

Graph is a ubiquitous structure in many domains. The rapidly increasing data volume calls for efficient and scalable graph data processing. In recent years, designing distributed graph processing systems has been an increasingly important area to fulfil the demands of processing big graphs in a distributed environment. Though a variety of distributed graph processing systems have been developed, very little attention has been paid to achieving a good combinational system performance in terms of usage simplicity, efficiency and scalability. To contribute to the study of distributed graph processing system, this work tries to fill this gap by designing a simple, speedy and scalable system. Our observation is that enforcing the communication flexibility of a system leads to the gains of both system efficiency and scalability as well as simple usage. We realize our idea in a system Graph3S and conduct extensive experiments with diverse algorithms over big graphs from different domains to test its performance. The results show that, besides simple usage, our system has outstanding performance over various graph algorithms and can even reach up to two orders of magnitude speedup over existing in-memory systems when applying to some algorithms. Also, its scalability is competitive to disk-based systems and even better when less machines are used.

cs.DC↗

arXiv2020

Efficient Bitruss Decomposition for Large-scale Bipartite Graphs

Cohesive subgraph mining in bipartite graphs becomes a popular research topic recently. An important structure k-bitruss is the maximal cohesive subgraph where each edge is contained in at least k butterflies (i.e., (2, 2)-bicliques). In this paper, we study the bitruss decomposition problem which aims to find all the k-bitrusses for k >= 0. The existing bottom-up techniques need to iteratively peel the edges with the lowest butterfly support. In this peeling process, these techniques are time-consuming to enumerate all the supporting butterflies for each edge. To relax this issue, we first propose a novel online index -- the BE-Index which compresses butterflies into k-blooms (i.e., (2, k)-bicliques). Based on the BE-Index, the new bitruss decomposition algorithm BiT-BU is proposed, along with two batch-based optimizations, to accomplish the butterfly enumeration of the peeling process in an efficient way. Furthermore, the BiT-PC algorithm is devised which is more efficient against handling the edges with high butterfly supports. We theoretically show that our new algorithms significantly reduce the time complexities of the existing algorithms. Also, we conduct extensive experiments on real datasets and the result demonstrates that our new techniques can speed up the state-of-the-art techniques by up to two orders of magnitude.

cs.DB↗

arXiv2019

A Survey of Community Search Over Big Graphs

With the rapid development of information technologies, various big graphs are prevalent in many real applications (e.g., social media and knowledge bases). An important component of these graphs is the network community. Essentially, a community is a group of vertices which are densely connected internally. Community retrieval can be used in many real applications, such as event organization, friend recommendation, and so on. Consequently, how to efficiently find high-quality communities from big graphs is an important research topic in the era of big data. Recently a large group of research works, called community search, have been proposed. They aim to provide efficient solutions for searching high-quality communities from large networks in real-time. Nevertheless, these works focus on different types of graphs and formulate communities in different manners, and thus it is desirable to have a comprehensive review of these works. In this survey, we conduct a thorough review of existing community search works. Moreover, we analyze and compare the quality of communities under their models, and the performance of different solutions. Furthermore, we point out new research directions. This survey does not only help researchers to have a better understanding of existing community search solutions, but also provides practitioners a better judgment on choosing the proper solutions.

cs.DB↗

arXiv2019

Efficient Algorithms for Densest Subgraph Discovery

Densest subgraph discovery (DSD) is a fundamental problem in graph mining. It has been studied for decades, and is widely used in various areas, including network science, biological analysis, and graph databases. Given a graph G, DSD aims to find a subgraph D of G with the highest density (e.g., the number of edges over the number of vertices in D). Because DSD is difficult to solve, we propose a new solution paradigm in this paper. Our main observation is that a densest subgraph can be accurately found through a k-core (a kind of dense subgraph of G), with theoretical guarantees. Based on this intuition, we develop efficient exact and approximation solutions for DSD. Moreover, our solutions are able to find the densest subgraphs for a wide range of graph density definitions, including clique-based and general pattern-based density. We have performed extensive experimental evaluation on eleven real datasets. Our results show that our algorithms are up to four orders of magnitude faster than existing approaches.

cs.DB↗

arXiv2019

Efficient Butterfly Counting for Large Bipartite Networks

Bipartite networks are of great importance in many real-world applications. In bipartite networks, butterfly (i.e., a complete 2 x 2 biclique) is the smallest non-trivial cohesive structure and plays a key role. In this paper, we study the problem of efficient counting the number of butterflies in bipartite networks. The most advanced techniques are based on enumerating wedges which is the dominant cost of counting butterflies. Nevertheless, the existing algorithms cannot efficiently handle large-scale bipartite networks. This becomes a bottleneck in large-scale applications. In this paper, instead of the existing layer-priority-based techniques, we propose a vertex-priority-based paradigm BFC-VP to enumerate much fewer wedges; this leads to a significant improvement of the time complexity of the state-of-the-art algorithms. In addition, we present cache-aware strategies to further improve time efficiency while theoretically retaining the time complexity of BFC-VP. Moreover, we also show that our proposed techniques can work efficiently in external and parallel contexts. Our extensive empirical studies demonstrate that the proposed techniques can speed up the state-of-the-art techniques by up to two orders of magnitude for the real datasets.

cs.SI↗

arXiv2019

A Survey and Experimental Analysis of Distributed Subgraph Matching

Recently there emerge many distributed algorithms that aim at solving subgraph matching at scale. Existing algorithm-level comparisons failed to provide a systematic view to the pros and cons of each algorithm mainly due to the intertwining of strategy and optimization. In this paper, we identify four strategies and three general-purpose optimizations from representative state-of-the-art works. We implement the four strategies with the optimizations based on the common Timely dataflow system for systematic strategy-level comparison. Our implementation covers all representation algorithms. We conduct extensive experiments for both unlabelled matching and labelled matching to analyze the performance of distributed subgraph matching under various settings, which is finally summarized as a practical guide.

cs.DB↗

arXiv2019

K-Core Maximization through Edge Additions

A popular model to measure the stability of a network is k-core - the maximal induced subgraph in which every vertex has at least k neighbors. Many studies maximize the number of vertices in k-core to improve the stability of a network. In this paper, we study the edge k-core problem: Given a graph G, an integer k and a budget b, add b edges to non-adjacent vertex pairs in G such that the k-core is maximized. We prove the problem is NP-hard and APX-hard. A heuristic algorithm is proposed on general graphs with effective optimization techniques. Comprehensive experiments on 9 real-life datasets demonstrate the effectiveness and the efficiency of our proposed methods.

cs.SI↗

arXiv2019

Critical Edge Identification: A K-Truss Based Model

In a social network, the strength of relationships between users can significantly affect the stability of the network. In this paper, we use the k-truss model to measure the stability of a social network. To identify critical connections, we propose a novel problem, named k-truss minimization. Given a social network G and a budget b, it aims to find b edges for deletion which can lead to the maximum number of edge breaks in the k-truss of G. We show that the problem is NP-hard. To accelerate the computation, novel pruning rules are developed to reduce the candidate size. In addition, we propose an upper bound based strategy to further reduce the searching space. Comprehensive experiments are conducted over real social networks to demonstrate the efficiency and effectiveness of the proposed techniques.

cs.SI↗

arXiv2018

Efficient and High-Quality Seeded Graph Matching: Employing High Order Structural Information

Driven by many real applications, we study the problem of seeded graph matching. Given two graphs $G_1 = (V_1, E_1)$ and $G_2 = (V_2, E_2)$, and a small set $S$ of pre-matched node pairs $[u, v]$ where $u \in V_1$ and $v \in V_2$, the problem is to identify a matching between $V_1$ and $V_2$ growing from $S$, such that each pair in the matching corresponds to the same underlying entity. Recent studies on efficient and effective seeded graph matching have drawn a great deal of attention and many popular methods are largely based on exploring the similarity between local structures to identify matching pairs. While these recent techniques work well on random graphs, their accuracy is low over many real networks. Motivated by this, we propose to utilize high order neighboring information to improve the matching accuracy. As a result, a new framework of seeded graph matching is proposed, which employs Personalized PageRank (PPR) to quantify the matching score of each node pair. To further boost the matching accuracy, we propose a novel postponing strategy, which postpones the selection of pairs that have competitors with similar matching scores. We theoretically prove that the postpone strategy indeed significantly improves the matching accuracy. To improve the scalability of matching large graphs, we also propose efficient approximation techniques based on algorithms for computing PPR heavy hitters. Our comprehensive experimental studies on large-scale real datasets demonstrate that, compared with state of the art approaches, our framework not only increases the precision and recall both by a significant margin but also achieves speed-up up to more than one order of magnitude.

cs.DS↗

arXiv2017

An Optimal and Progressive Approach to Online Search of Top-k Influential Communities

Community search over large graphs is a fundamental problem in graph analysis. Recent studies propose to compute top-k influential communities, where each reported community not only is a cohesive subgraph but also has a high influence value. The existing approaches to the problem of top-k influential community search can be categorized as index-based algorithms and online search algorithms without indexes. The index-based algorithms, although being very efficient in conducting community searches, need to pre-compute a special-purpose index and only work for one built-in vertex weight vector. In this paper, we investigate on-line search approaches and propose an instance-optimal algorithm LocalSearch whose time complexity is linearly proportional to the size of the smallest subgraph that a correct algorithm needs to access without indexes. In addition, we also propose techniques to make LocalSearch progressively compute and report the communities in decreasing influence value order such that k does not need to be specified. Moreover, we extend our framework to the general case of top-k influential community search regarding other cohesiveness measures. Extensive empirical studies on real graphs demonstrate that our algorithms outperform the existing online search algorithms by several orders of magnitude.

cs.DB↗

arXiv2017

Dynamical SimRank Search on Time-Varying Networks

In this article, we study the efficient dynamical computation of all-pairs SimRanks on time-varying graphs. Li {\em et al}.'s approach requires $O(r^4 n^2)$ time and $O(r^2 n^2)$ memory in a graph with $n$ nodes, where $r$ is the target rank of the low-rank SVD. (1) We first consider edge update that does not accompany new node insertions. We show that the SimRank update $ΔS$ in response to every link update is expressible as a rank-one Sylvester matrix equation. This provides an incremental method requiring $O(Kn^2)$ time and $O(n^2)$ memory in the worst case to update all pairs of similarities for $K$ iterations. (2) To speed up the computation further, we propose a lossless pruning strategy that captures the "affected areas" of $ΔS$ to eliminate unnecessary retrieval. This reduces the time of the incremental SimRank to $O(K(m+|AFF|))$, where $m$ is the number of edges in the old graph, and $|AFF| (\le n^2)$ is the size of "affected areas" in $ΔS$, and in practice, $|AFF| \ll n^2$. (3) We also consider edge updates that accompany node insertions, and categorize them into three cases, according to which end of the inserted edge is a new node. For each case, we devise an efficient incremental algorithm that can support new node insertions. (4) We next design an efficient batch incremental method that handles "similar sink edges" simultaneously and eliminates redundant edge updates. (5) To achieve linear memory, we devise a memory-efficient strategy that dynamically updates all pairs of SimRanks column by column in just $O(Kn+m)$ memory, without the need to store all $(n^2)$ pairs of old SimRank scores. Experimental studies on various datasets demonstrate that our solution substantially outperforms the existing incremental SimRank methods, and is faster and more memory-efficient than its competitors on million-scale graphs.

cs.DB↗

arXiv2017

Efficient Graph Edit Distance Computation and Verification via Anchor-aware Lower Bound Estimation

Graph edit distance (GED) is an important similarity measure adopted in a similarity-based analysis between two graphs, and computing GED is a primitive operator in graph database analysis. Partially due to the NP-hardness, the existing techniques for computing GED are only able to process very small graphs with less than 30 vertices. Motivated by this, in this paper we systematically study the problems of both GED computation, and GED verification (i.e., verify whether the GED between two graphs is no larger than a user-given threshold). Firstly, we develop a unified framework that can be instantiated into either a best-first search approach AStar+ or a depth-first search approach DFS+. Secondly, we design anchor-aware lower bound estimation techniques to compute tighter lower bounds for intermediate search states, which significantly reduce the search spaces of both AStar+ and DFS+. We also propose efficient techniques to compute the lower bounds. Thirdly, based on our unified framework, we contrast AStar+ with DFS+ regarding their time and space complexities, and recommend that AStar+ is better than DFS+ by having a much smaller search space. Extensive empirical studies validate that AStar+ performs better than DFS+, and show that our AStar+-BMa approach outperforms the state-of-the-art technique by more than four orders of magnitude.

cs.DB↗

arXiv2017

Enumerating k-Vertex Connected Components in Large Graphs

Cohesive subgraph detection is an important graph problem that is widely applied in many application domains, such as social community detection, network visualization, and network topology analysis. Most of existing cohesive subgraph metrics can guarantee good structural properties but may cause the free-rider effect. Here, by free-rider effect, we mean that some irrelevant subgraphs are combined as one subgraph if they only share a small number of vertices and edges. In this paper, we study k-vertex connected component (k-VCC) which can effectively eliminate the free-rider effect but less studied in the literature. A k-VCC is a connected subgraph in which the removal of any k-1 vertices will not disconnect the subgraph. In addition to eliminating the free-rider effect, k-VCC also has other advantages such as bounded diameter, high cohesiveness, bounded graph overlapping, and bounded subgraph number. We propose a polynomial time algorithm to enumerate all k-VCCs of a graph by recursively partitioning the graph into overlapped subgraphs. We find that the key to improving the algorithm is reducing the number of local connectivity testings. Therefore, we propose two effective optimization strategies, namely neighbor sweep and group sweep, to largely reduce the number of local connectivity testings. We conduct extensive performance studies using seven large real datasets to demonstrate the effectiveness of this model as well as the efficiency of our proposed algorithms.

cs.DB↗

arXiv2017

Effective Multi-Query Expansions: Collaborative Deep Networks for Robust Landmark Retrieval

Given a query photo issued by a user (q-user), the landmark retrieval is to return a set of photos with their landmarks similar to those of the query, while the existing studies on the landmark retrieval focus on exploiting geometries of landmarks for similarity matches between candidate photos and a query photo. We observe that the same landmarks provided by different users over social media community may convey different geometry information depending on the viewpoints and/or angles, and may subsequently yield very different results. In fact, dealing with the landmarks with \illshapes caused by the photography of q-users is often nontrivial and has seldom been studied. In this paper we propose a novel framework, namely multi-query expansions, to retrieve semantically robust landmarks by two steps. Firstly, we identify the top-$k$ photos regarding the latent topics of a query landmark to construct multi-query set so as to remedy its possible \illshape. For this purpose, we significantly extend the techniques of Latent Dirichlet Allocation. Then, motivated by the typical \emph{collaborative filtering} methods, we propose to learn a \emph{collaborative} deep networks based semantically, nonlinear and high-level features over the latent factor for landmark photo as the training set, which is formed by matrix factorization over \emph{collaborative} user-photo matrix regarding the multi-query set. The learned deep network is further applied to generate the features for all the other photos, meanwhile resulting into a compact multi-query set within such space. Extensive experiments are conducted on real-world social media data with both landmark photos together with their user information to show the superior performance over the existing methods.

cs.CV↗