arXiv subjects

Xun Song

Publications and source records attributed to Xun Song.

4 recordsLinked to original sources

arXiv2026

A Multimodal Reasoning Typology for Grounding Chart-Image Coherence in Science Communication

Charts and images appear together throughout scientific publications, yet most computational work does not characterize their coherence. We argue that a chart, its accompanying image, and the caption that links them form a multimodal unit, and that the inferential work required to read it varies systematically. To capture this variation, we develop a typology of reasoning gaps, R1 through R5, that characterizes how chart, image, and text jointly convey a scientific claim, and the interpretive work this demands of the reader. Some pairs restate the same data, while in other pairs, charts are used to quantify a structure the image localizes, project image content onto an external variable, audit an image-based claim, or jointly construct a frame that neither panel can establish alone. The typology is anchored in the grounding theory of communication and was derived bottom-up, with a neuroscience expert, from a corpus of 79 traumatic brain injury papers and 32 chart-image pairs. Crucially, the levels provide a systematic mechanism for identifying where grounding succeeds or breaks down, rather than leaving it to subjective inference. We show this in a study in which a domain expert and three non-experts judge vision-language model (VLM) descriptions of 25 pairs: the level predicts where their judgments align and where they diverge, isolating the points at which contextual knowledge, not the figure, carries coherence. This typology thus offers figure designers a systematic way to balance text against chart-image pairs, bridging the expert-to-non-expert divide in reading a scientific takeaway.

cs.CV↗

arXiv2026

Four constructions of self-dual binary cyclic codes with a lower bound on the minimum distances better than the square-root bound

In spite of the intensive study of cyclic codes and the recent construction of an infinite family of self-dual binary cyclic codes whose minimum distances have the square-root bound in IEEE Trans. IT, vol. 71, no. 4, 2025, it is still a 70-year-old open problem whether there is an infinite family of self-dual binary cyclic codes whose minimum distances have a lower bound better than the square-root bound. This paper settles this long-standing open problem in coding theory by presenting infinite families of such self-dual binary cyclic codes. As by-products, several families of cyclic codes with better parameters than those in some references are also constructed in this paper.

cs.IT↗

arXiv2026

Rationalize: Shared Semantic Reasoning for Human-AI Alignment

We introduce Rationalize, a role-pair framework for shared semantic reasoning between humans and AI models in data-driven sensemaking. Building on ideas in human-machine teaming and critical thinking, we conceptualize human-AI interaction as a series of complementary role pairs (Explorer-Guide, Investigator-Informant, Teacher-Student, Judge-Advocate) operating in a shared reasoning space. In this space, human analysts and AI models (such as LLMs) make purposes, questions, assumptions, evidence, inferences, and implications explicit, facilitating alignment not only at the output level but at the level of rationalization of intent and action by each side. We relate these role pairs to the bidirectional human-AI alignment framework, illustrating how "aligning AI to humans" and "aligning humans to AI" differ by role, and sketch a collaborative research agenda for alignment design and assessment using element-level and role-specific approaches.

cs.HC↗

arXiv2025

GeneMamba: An Efficient and Effective Foundation Model on Single Cell Data

Single-cell RNA sequencing (scRNA-seq) enables high-resolution analysis of cellular heterogeneity, but its complexity, which is marked by high dimensionality, sparsity, and batch effects, which poses major computational challenges. Transformer-based models have made significant advances in this domain but are often limited by their quadratic complexity and suboptimal handling of long-range dependencies. In this work, we introduce GeneMamba, a scalable and efficient foundation model for single-cell transcriptomics built on state space modeling. Leveraging the Bi-Mamba architecture, GeneMamba captures bidirectional gene context with linear-time complexity, offering substantial computational gains over transformer baselines. The model is pretrained on nearly 30 million cells and incorporates biologically informed objectives, including pathway-aware contrastive loss and rank-based gene encoding. We evaluate GeneMamba across diverse tasks, including multi-batch integration, cell type annotation, and gene-gene correlation, demonstrating strong performance, interpretability, and robustness. These results position GeneMamba as a practical and powerful alternative to transformer-based methods, advancing the development of biologically grounded, scalable tools for large-scale single-cell data analysis.

cs.CL↗