arXiv subjects

Y. Qi

Publications and source records attributed to Y. Qi.

At least 19 recordsLinked to original sources

arXiv2026

Parenclitic hypergraphs and their application in personalized cancer therapy

Understanding the differences between individual instances of the same complex system remains a central challenge, particularly in biological contexts. Parenclitic networks constitute a suitable means to detect deviations in correlations with respect to reference populations. Here, we introduce parenclitic hypergraphs, a general framework for identifying anomalies in higher-order correlations across arbitrary interaction orders. After validating the method on synthetic datasets and benchmark ones, we apply it to patient-derived cancer organoids, capturing temporal changes in gene expression between healthy and cancerous tissues as the disease progresses. Our approach not only reproduces known oncogenic signatures, but also reveals a previously unrecognized candidate therapeutic target. Since organoids are generated from individual patients, our method provides, for the first time, a viable protocol for personalized cancer therapy based on higher-order correlation patterns. These findings offer a novel, systems-level strategy for precision oncology grounded in complex systems theory.

q-bio.QM↗

arXiv2026

Low Energy Phonon Bursts Created By Fast Neutron Damage

Solid state athermal phonon calorimeters used in the search for low mass dark matter or coherent neutrino-nucleus interactions have long observed a large excess of events below several hundred eV. The relaxation of damage created by the interaction of fast cosmic ray neutrons with the detector has been proposed as a source of these excess events. By comparing neutron exposed detectors to control detectors, we report the first measurement of phonon bursts caused by damage created by fast neutrons. Differences in the spectral shape, the rate dependence on thermal history, and the observed spectral rate scaled to the neutron exposure between irradiated and control detectors suggest that our observed LEE backgrounds are not dominated by neutron damage-induced phonon bursts.

physics.ins-det↗

arXiv2026

Electroluminescence in dopant-free GaAs/AlGaAs single heterojunctions: 2D free excitons, H-band, and the tidal effect

Bright electroluminescence (EL) from dopant-free ambipolar lateral p-n junctions in GaAs/AlGaAs single heterointerface (SH) heterostructures is used to probe neutral free excitons arising from two-dimensional electron and hole gases (2DEGs and 2DHGs). The EL spectra reveal both the heavy-hole neutral free exciton (X$^0$) and the high-energy free exciton of the H band (HE). A combination of transition energies, lifetimes, spatial emission profiles, and temperature dependences points to a predominantly two-dimensional character for these excitons at the SH. For X$^0$, the EL peak energies (1515.5-1515.7 meV) lie slightly above the corresponding bulk GaAs photoluminescence (PL) line at 1515.3 meV, while time-resolved measurements yield markedly shorter lifetimes for EL than for PL (337 ps vs. 1610 ps), consistent with recombination in a confined interfacial layer. The HE exciton exhibits a Stark blueshift under forward bias below threshold, and its energies and lifetimes (down to 575 ps) are tuned by the topgate voltage; above threshold, HE emission is quenched in favor of X$^0$. Finally, the tidal effect $-$ a form of pulsed EL generated by swapping the topgate voltage polarity in ambipolar field-effect transistors $-$ produces an X$^0$ line at the same energy as in the lateral p-n junction and reproduces the characteristic nonmonotonic frequency dependence of the brightness previously observed in quantum-well heterostructures, again indicating a 2D-like origin. Taken together, these results show electrically generated and controllable 2D-like excitons (HE and X$^0$), thereby bridging 2D exciton physics and 2DEG/2DHG platforms in dopant-free GaAs/AlGaAs SH devices.

cond-mat.mes-hall↗

arXiv2025

Spontaneous generation of athermal phonon bursts within bulk silicon causing excess noise, low energy background events and quasiparticle poisoning in superconducting sensors

Solid state phonon detectors used in the search for dark matter and coherent neutrino nucleus interactions (CE$\nu$NS) require excellent energy resolution (eV-scale or below) and low backgrounds. An unknown source of phonon bursts, the low energy excess (LEE), dominates other above-threshold backgrounds and generates excess shot noise from sub-threshold bursts. In this paper, we measure these phonon bursts for 12 days after cooldown in two nearly identical 1 cm$^2$ silicon detectors that differ only in the thickness of their substrate (1 mm vs. 4 mm thick). We find that both the channel-correlated shot noise and near-threshold shared LEE relax with time since cooldown. Additionally, both the correlated shot noise and LEE rates scale linearly with substrate thickness. When combined with previous measurements of other silicon phonon detectors with different substrate geometries and mechanical support strategies, these measurements strongly suggest that the dominant source of both above and below threshold LEE is the bulk substrate. By monitoring the relation between bias power and excess phonon shot noise, we estimate that the energy scale for sub-threshold noise events is $0.68 \pm 0.38$ meV. In our final dataset, we report a world-leading energy resolution of 258.5$\pm$0.4 meV in the 1 mm thick detector. Simple calculations suggest that these silicon substrate phonon bursts are likely a significant source of quasiparticle poisoning in superconducting qubits operated in well shielded and vibration free environments.

physics.ins-det↗

arXiv2025

First Limits on Light Dark Matter Interactions in a Low Threshold Two Channel Athermal Phonon Detector from the TESSERACT Collaboration

We present results of a search for spin-independent dark matter-nucleon interactions in a 1 cm$^2$ by 1 mm thick (0.233 gram) high-resolution silicon athermal phonon detector operated above ground. For interactions in the substrate, this detector achieves a r.m.s. baseline energy resolution of 361.5 $\pm$ 0.4 MeV/$c^2$, the best for any athermal phonon detector to date. With an exposure of 0.233g $\times$ 12 hours, we place the most stringent constraints on dark matter masses between 44 and 87 MeV/$c^2$, with the lowest unexplored cross section of 4 $\times 10^{-32}$ cm$^2$ at 87 MeV/$c^2$. We employ a conservative salting technique to reach the lowest dark matter mass ever probed via direct detection experiment. This constraint is enabled by two-channel rejection of low-energy backgrounds that are coupled to individual sensors.

hep-ex↗

arXiv2025

Revealing Higher-Order Topological Bulk-boundary Correspondence in Bismuth Crystal with Spin-helical Hinge State Loop and Proximity Superconductivity

Topological materials are typically characterized by gapless boundary states originated from nontrivial bulk band topology, known as topological bulk-boundary correspondence. Recently, this fundamental concept has been generalized in higher-order topological insulators (HOTIs). E.g., a second-order three-dimensional (3D) TI hosts one-dimensional (1D) topological hinge states winding around the crystal. However, a complete verification of higher-order topology is still lacking as it requires probing all the crystal boundaries. Here we studied a promising candidate of second-order TI, bismuth (Bi), in the form of mesoscopic crystals grown on superconducting V3Si. Using low-temperature scanning tunneling microscopy, we directly observed dispersive 1D states on various hinges of the crystal. Upon introducing magnetic scatterers, new scattering channels emerged selectively on certain hinges, revealing their spin-helical nature. Combining first-principle calculation and global symmetry analysis, we find these hinge states are topological and formed a closed loop encircling the crystal. This provides direct evidence on the higher-order topology in Bi. Moreover, proximity superconductivity is observed in the topological hinge states, enabling HOTI as a promising platform for realizing topological superconductivity and Majorana quasiparticles.

cond-mat.mes-hall↗

arXiv2024

Design Studies Of A Pulsed Quasimonoenergetic 2-keV Neutron Source For Calibration Of Low Threshold Dark Matter Detectors

We describe design studies for a pulsed quasi-monoenergetic 2-keV neutron source for calibration of sub-keV nuclear recoils. Such a calibration is required for detectors sensitive to sub-GeV dark matter and also the coherent elastic scattering of reactor neutrinos. In our design, neutrons from a commercial deuterium-tritium generator are moderated to the keV scale and then filtered to the monoenergetic spectrum using a feature in the neutron cross section of scandium. In this approach, unmoderated high-energy neutrons form a challenging background, along with gammas from neutron capture in the moderator materials. We describe the optimization of the moderator+filter and shielding geometry, and find a geometry that in simulation achieves both the target neutron flux at 2 keV and subdominant rates of background interactions. Lastly, we describe a future path to lower-energy (few eV scale) calibrations using time-of-flight and sub-keV neutrons.

physics.ins-det↗

arXiv2024

Exploring Superconductivity in Ba$_{3}$Ir$_{4}$Ge$_{16}$: Experimental and Theoretical Insights

We explore both experimental and theoretical aspects of the superconducting properties in the distinctive layered caged compound, Ba$_{3}$Ir$_{4}$Ge$_{16}$. Our approach integrates muon spin rotation and relaxation ($\mu$SR) measurements with magnetization and heat capacity experiments, accompanied by first-principle calculations. The compound's bulk superconductivity is unequivocally established through DC magnetization measurements, revealing a critical temperature ($T_\mathrm{C}$) of 5.7 K. A noteworthy characteristic observed in the low-temperature superfluid density is its saturating behavior, aligning with the features typical of conventional Bardeen-Cooper-Schrieffer (BCS) superconductors. The assessment of moderate electron-phonon coupling superconductivity is conducted through transverse field $\mu$SR measurements, yielding a superconducting gap to $T_\mathrm{C}$ ratio ($2\Delta(0)/k_\mathrm{B}T_\mathrm{C}$) of 4.04, a value corroborated by heat capacity measurements. Crucially, zero field $\mu$SR measurements dismiss the possibility of any spontaneous magnetic field emergence below $T_\mathrm{C}$, highlighting the preservation of time-reversal symmetry. Our experimental results are reinforced by first-principles density functional calculations, underscoring the intricate interplay between crystal structure and superconducting order parameter symmetry in polyhedral caged compounds. This comprehensive investigation enhances our understanding of the nuanced relationship between crystal structure and superconductivity in such unique compounds.

cond-mat.supr-con↗

arXiv2023

First Demonstration of the HeRALD Superfluid Helium Detector Concept

The SPICE/HeRALD collaboration is performing R&D to enable studies of sub-GeV dark matter models using a variety of target materials. Here we report our recent progress on instrumenting a superfluid $^4$He target mass with a transition-edge sensor based calorimeter to detect both atomic signals (scintillation) and $^4$He quasiparticle (phonon and roton) excitations. The sensitivity of HeRALD to the critical "quantum evaporation" signal from $^4$He quasiparticles requires us to block the superfluid film flow to the calorimeter. We have developed a heat-free film-blocking method employing an unoxidized Cs film, which we implemented in a prototype "HeRALD v0.1" detector of ~10 g target mass. This article reports initial studies of the atomic and quasiparticle signal channels. A key result of this work is the measurement of the quantum evaporation channel's gain of 0.15 $\pm$ 0.01, which will enable $^4$He-based dark matter experiments in the near term. With this gain the HeRALD detector reported here has an energy threshold of 145 eV at 5 sigma, which would be sensitive to dark matter masses down to 220 MeV/c$^2$.

physics.ins-det↗

arXiv2023

Advanced methods for analyzing in-situ observations of magnetic reconnection

There is ample evidence for magnetic reconnection in the solar system, but it is a nontrivial task to visualize, to determine the proper approaches and frames to study, and in turn to elucidate the physical processes at work in reconnection regions from in-situ measurements of plasma particles and electromagnetic fields. Here an overview is given of a variety of single- and multi-spacecraft data analysis techniques that are key to revealing the context of in-situ observations of magnetic reconnection in space and for detecting and analyzing the diffusion regions where ions and/or electrons are demagnetized. We focus on recent advances in the era of the Magnetospheric Multiscale mission, which has made electron-scale, multi-point measurements of magnetic reconnection in and around Earth's magnetosphere.

physics.space-ph↗

arXiv2022

Frustrated ferromagnetic transition in AB-stacked honeycomb bilayer

In two-dimensional (2D) ferromagnets, anisotropy is essential for the magnetic ordering as dictated by the Mermin-Wagner theorem. But when competing anisotropies are present, the phase transition becomes nontrivial. Here, utilizing highly sensitive susceptometry of scanning superconducting quantum interference device microscopy, we probe the spin correlations of ABC-stacked CrBr3 under zero magnetic field. We identify a plateau feature in susceptibility above the critical temperature (Tc) in thick samples. It signifies a crossover regime induced by the competition between easy-plane intralayer exchange anisotropy versus uniaxial interlayer anisotropy. The evolution of the critical behavior from the bulk to 2D shows that the competition between the anisotropies is magnified in the reduced dimension. It leads to a strongly frustrated ferromagnetic transition in the bilayer with fluctuation on the order of Tc, which is distinct from both the monolayer and the bulk. Our observation potentially offers a 2D localized spin system on honeycomb lattice to explore magnetic frustration.

cond-mat.mes-hall↗

arXiv2021

Oscillating paramagnetic Meissner effect and Berezinskii-Kosterlitz-Thouless transition in $Bi_2Sr_2CaCu_2O_{8+\delta}$ monolayer

Monolayers of a prototypical cuprate high transition-temperature ($T_C$) superconductor $Bi_2Sr_2CaCu_2O_{8+\delta}$ (Bi2212) was recently found to show $T_C$ and other electronic properties similar to those of the bulk. The robustness of superconductivity in an ideal two-dimensional (2D) system was an intriguing fact that defied the Mermin-Wagner theorem. Here, we took advantage of the high sensitivity of scanning SQUID susceptometry to image the phase stiffness throughout the phase transition of Bi2212 in the 2D limit. We found susceptibility oscillated with flux between diamagnetism and paramagnetism in a Fraunhofer-like pattern up till $T_C$. The temperature and sample size-dependence of the modulation period agreed well with our Coulomb gas analogy of a finite 2D system based on Berezinskii-Kosterlitz-Thouless (BKT) transition. In the multilayers, the susceptibility oscillation differed in a small temperature regime below $T_C$ in consistent with a dimensional-crossover led by interlayer coupling. Serving as strong evidence of BKT transition in the bulk, there appeared a sharp superfluid density jump at zero-field and paramagnetism at small fields just below $T_C$. These results unified the phase transitions from the monolayer Bi2212 to the bulk as BKT transition with finite interlayer coupling. This elucidating picture favored the pre-formed pairs scenario for the underdoped cuprates regardless of lattice dimensionality.

cond-mat.supr-con↗

arXiv2020

Mode-resolved reciprocal space mapping of electron-phonon interaction in the Weyl semimetal candidate Td-WTe$_2$

The selective excitation of coherent phonons provides unique capabilities to control fundamental properties of quantum materials on ultrafast time scales. For instance, in the presence of strong electron-phonon coupling, the electronic band structure can become substantially modulated. Recently, it was predicted that by this means even topologically protected states of matter can be manipulated and, ultimately, be destroyed: For the layered transition metal dichalcogenide Td-WTe$_2$, pairs of Weyl points are expected to annihilate as an interlayer shear mode drives the crystalline structure towards a centrosymmetric phase. By monitoring the changes in the electronic structure of Td-WTe$_2$ with femtosecond resolution, we provide here direct experimental evidence that the coherent excitation of the shear mode acts on the electronic states near the Weyl points. Band structure data in comparison with our results imply, furthermore, the periodic reduction in the spin splitting of bands near the Fermi energy, a distinct electronic signature of the non-centrosymmetric Td ground state of WTe$_2$. The comparison with higher-frequency coherent phonon modes finally proves the shear mode-selectivity of the observed changes in the electronic structure. Our real-time observations reveal direct experimental insights into electronic processes that are of vital importance for a coherent phonon-induced topological phase transition in Td-WTe$_2$.

cond-mat.mtrl-sci↗

arXiv2019

Towards label-free distributed fiber hydrogen sensor with stimulated Raman spectroscopy

Hydrogen detection is of great importance in chemical and energy industries. Optical fiber hydrogen sensors show flexibility and compactness and have the potential for distributed analysis. However, traditional fiber sensors encounter a challenge for light to interact with hydrogen directly since hydrogen only display weak quadrupole absorption, and metallic palladium and platinum thin-film coatings are typically used as an optically detectable label. Here, based on stimulated Raman spectroscopy in hollow-core photonic crystal fibers, we investigate the label-free optical fiber distributed hydrogen sensors operating in the optical telecommunication band. The approach of distributed Raman measurement represents a new paradigm in fiber sensors, potentially allowing distributed chemical analysis in gas or liquid phase with high sensitivity and selectivity.

physics.optics↗

arXiv2016

Ultrafast terahertz-field-driven ionic response in ferroelectric BaTiO$_3$

The dynamical processes associated with electric field manipulation of the polarization in a ferroelectric remain largely unknown but fundamentally determine the speed and functionality of ferroelectric materials and devices. Here we apply sub-picosecond duration, single-cycle terahertz pulses as an ultrafast electric field bias to prototypical BaTiO$_3$ ferroelectric thin films with the atomic-scale response probed by femtosecond x-ray scattering techniques. We show that electric fields applied perpendicular to the ferroelectric polarization drive large amplitude displacements of the titanium atoms along the ferroelectric polarization axis, comparable to that of the built-in displacements associated with the intrinsic polarization and incoherent across unit cells. This effect is associated with a dynamic rotation of the ferroelectric polarization switching on and then off on picosecond timescales. These transient polarization modulations are followed by long-lived vibrational heating effects driven by resonant excitation of the ferroelectric soft mode, as reflected in changes in the c-axis tetragonality. The ultrafast structural characterization described here enables direct comparison with first-principles-based molecular dynamics simulations, with good agreement obtained.

cond-mat.mtrl-sci↗

arXiv2015

Modiffied Schottky emission to explain thickness dependence and slow depolarization in BaTiO$_3$ nanowires

We investigate the origin of the depolarization rates in ultrathin adsorbate-stabilized ferroelectric wires. By applying density functional theory calculations and analytic modeling, we demonstrate that the depolarization results from the leakage of charges stored at the surface adsorbates, which play an important role in the polarization stabilization. The depolarization speed varies with thickness and temperature, following several complex trends. A comprehensive physical model is presented, in which quantum tunneling, Schottky emission and temperature dependent electron mobility are taken into consideration. This model simulates experimental results, validating the physical mechanism. We also expect that this improved tunneling-Schottky emission model could be applied to predict the retention time of polarization and the leakage current for various ferroelectric materials with different thicknesses and temperatures.

cond-mat.mtrl-sci↗

arXiv2010

Signal processing of acoustic signals in the time domain with an active nonlinear nonlocal cochlear model

A two space dimensional active nonlinear nonlocal cochlear model is formulated in the time domain to capture nonlinear hearing effects such as compression, multi-tone suppression and difference tones. The micromechanics of the basilar membrane (BM) are incorporated to model active cochlear properties. An active gain parameter is constructed in the form of a nonlinear nonlocal functional of BM displacement. The model is discretized with a boundary integral method and numerically solved using an iterative second order accurate finite difference scheme. A block matrix structure of the discrete system is exploited to simplify the numerics with no loss of accuracy. Model responses to multiple frequency stimuli are shown in agreement with hearing experiments. A nonlinear spectrum is computed from the model, and compared with FFT spectrum for noisy tonal inputs. The discretized model is efficient and accurate, and can serve as a useful auditory signal processing tool.

q-bio.QM↗

arXiv2010

Epitaxial graphene on SiC(0001): More than just honeycombs

The potential of graphene to impact the development of the next generation of electronics has renewed interest in its growth and structure. The graphitization of hexagonal SiC surfaces provides a viable alternative for the synthesis of graphene, with wafer-size epitaxial graphene on SiC(0001) now possible. Despite this recent progress, the exact nature of the graphene-SiC interface and whether the graphene even has a semiconducting gap remain controversial. Using scanning tunneling microscopy with functionalized tips and density functional theory calculations, here we show that the interface is a warped carbon sheet consisting of three-fold hexagon-pentagon-heptagon complexes periodically inserted into the honeycomb lattice. These defects relieve the strain between the graphene layer and the SiC substrate, while still retaining the three-fold coordination for each carbon atom. Moreover, these defects break the six-fold symmetry of the honeycomb, thereby naturally inducing a gap: the calculated band structure of the interface is semiconducting and there are two localized states near K below the Fermi level, explaining the photoemission and carbon core-level data. Nonlinear dispersion and a 33 meV gap are found at the Dirac point for the next layer of graphene, providing insights into the debate over the origin of the gap in epitaxial graphene on SiC(0001). These results indicate that the interface of the epitaxial graphene on SiC(0001) is more than a dead buffer layer, but actively impacts the physical and electronic properties of the subsequent graphene layers.

cond-mat.mes-hall↗